Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C1orf71 Sequence: fasta or formatted (725aa) NCBI GI: 213021160
Description:

hypothetical protein LOC163882 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {616aa} hypothetical protein LOC163882 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         49           2
 C cysteine            3.2         23           2
 D aspartate           8.7         63           3
 E glutamate          10.3         75           2
 F phenylalanine       1.8         13           1
 G glycine             5.4         39           3
 H histidine           2.1         15           1
 I isoleucine          3.3         24           1
 K lysine              5.9         43           2
 L leucine            11.3         82           2
 M methionine          1.4         10           1
 N asparagine          3.3         24           3
 P proline             5.2         38           2
 Q glutamine           6.2         45           2
 R arginine            2.9         21           2
 S serine             10.2         74           2
 T threonine           5.2         38           2
 V valine              4.4         32           2
 W tryptophan          0.4          3           1
 Y tyrosine            1.9         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC163882 isoform 1 
C1orf71               0.840   hypothetical protein LOC163882 isoform 2 
IWS1                  0.015   IWS1 homolog 
DMP1                  0.013   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.013   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
DSPP                  0.011   dentin sialophosphoprotein preproprotein 
MYH11                 0.010   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.010   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.010   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.010   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
ACRC                  0.009   ACRC protein 
SPANXN2               0.008   SPANX-N2 protein 
CCDC18                0.008   sarcoma antigen NY-SAR-41 
SENP7                 0.008   sentrin/SUMO-specific protease 7 isoform 1 
MPHOSPH10             0.007   M-phase phosphoprotein 10 
TSGA10                0.007   testis specific, 10 
TSGA10                0.007   testis specific, 10 
MYH9                  0.007   myosin, heavy polypeptide 9, non-muscle 
C21orf91              0.007   early undifferentiated retina and lens isoform 1 [H...
LOC100289979          0.006   PREDICTED: hypothetical protein XP_002346878 
LOC100289273          0.006   PREDICTED: hypothetical protein XP_002342720 
INTS10                0.006   integrator complex subunit 10 
GON4L                 0.006   gon-4-like isoform a 
GON4L                 0.006   gon-4-like isoform b 
CDC2L1                0.006   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.006   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.006   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.006   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.006   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.006   cell division cycle 2-like 1 (PITSLRE proteins) isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press