Guide to the Human Genome
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Name: SPANXN2 Sequence: fasta or formatted (180aa) NCBI GI: 57634514
Description:

SPANX-N2 protein

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.7          3           1
 C cysteine            0.6          1           1
 D aspartate          12.8         23           1
 E glutamate          18.3         33           3
 F phenylalanine       0.0          0           0
 G glycine             6.1         11           2
 H histidine           0.6          1           1
 I isoleucine          2.8          5           2
 K lysine              5.6         10           2
 L leucine             6.1         11           1
 M methionine          1.1          2           1
 N asparagine          5.0          9           2
 P proline             3.9          7           2
 Q glutamine           7.8         14           1
 R arginine            2.2          4           1
 S serine             18.3         33           2
 T threonine           3.3          6           1
 V valine              1.7          3           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.2          4           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SPANX-N2 protein 
SPANXN3               0.575   SPANX-N3 protein 
SPANXN1               0.241   SPANX-N1 protein 
SPANXN5               0.226   SPANX family, member N5 
SPANXN4               0.202   SPANX family, member N4 
PAF1                  0.120   Paf1, RNA polymerase II associated factor, homolog [...
SPANXC                0.120   sperm protein associated with the nucleus, X chromos...
SPANXA1               0.114   sperm protein associated with the nucleus, X chromos...
SPANXA2               0.114   sperm protein associated with the nucleus, X chromos...
SPANXE                0.111   SPANX family, member E 
SPANXB1               0.105   SPANX family, member B1 
SPANXB2               0.105   sperm protein associated with the nucleus, X chromos...
SPANXD                0.105   SPANX family, member D 
SPANXF1               0.105   SPANX family, member F1 
IWS1                  0.096   IWS1 homolog 
DMP1                  0.096   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.096   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
DSPP                  0.093   dentin sialophosphoprotein preproprotein 
SETD1B                0.090   SET domain containing 1B 
BAZ2B                 0.087   bromodomain adjacent to zinc finger domain, 2B [Homo...
RPGR                  0.087   retinitis pigmentosa GTPase regulator isoform C [Hom...
UBTF                  0.084   upstream binding transcription factor, RNA polymera...
UBTF                  0.084   upstream binding transcription factor, RNA polymera...
UBTF                  0.084   upstream binding transcription factor, RNA polymerase...
ANP32B                0.081   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
MYST4                 0.081   MYST histone acetyltransferase (monocytic leukemia)...
ACRC                  0.078   ACRC protein 
YTHDC1                0.078   splicing factor YT521-B isoform 2 
YTHDC1                0.078   splicing factor YT521-B isoform 1 
NCL                   0.075   nucleolin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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