Guide to the Human Genome
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Name: LOC100289979 Sequence: fasta or formatted (297aa) NCBI GI: 239748997
Description:

PREDICTED: hypothetical protein XP_002346878

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.0          6           2
 C cysteine            1.0          3           1
 D aspartate           2.4          7           1
 E glutamate          20.9         62           3
 F phenylalanine       0.3          1           1
 G glycine            11.8         35           4
 H histidine           1.3          4           1
 I isoleucine          1.0          3           1
 K lysine              3.4         10           2
 L leucine            12.5         37           2
 M methionine          1.0          3           1
 N asparagine          0.3          1           1
 P proline             4.0         12           2
 Q glutamine          11.4         34           2
 R arginine            6.1         18           2
 S serine              9.1         27           2
 T threonine           1.3          4           1
 V valine              9.8         29           1
 W tryptophan          0.3          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346878 
LOC100289273          1.000   PREDICTED: hypothetical protein XP_002342720 
LOC100133758          0.155   PREDICTED: hypothetical protein, partial 
ZAN                   0.102   zonadhesin isoform 3 
ZAN                   0.102   zonadhesin isoform 6 
KIAA1826              0.082   hypothetical protein LOC84437 
RP1L1                 0.078   retinitis pigmentosa 1-like 1 
LOC645202             0.073   PREDICTED: hypothetical protein LOC645202 
CCDC88A               0.069   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.069   coiled-coil domain containing 88A isoform 1 
RPGR                  0.067   retinitis pigmentosa GTPase regulator isoform C [Hom...
LOC283685             0.065   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.065   PREDICTED: golgi autoantigen, golgin subfamily a-li...
WDR87                 0.065   NYD-SP11 protein 
LOC400352             0.062   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.062   PREDICTED: similar to Putative golgin subfamily A m...
CCDC70                0.060   coiled-coil domain containing 70 precursor 
GPR101                0.058   G protein-coupled receptor 101 
CCDC88B               0.058   coiled-coil domain containing 88 
LOC727832             0.056   golgi autoantigen, golgin subfamily a-like 
TCHH                  0.056   trichohyalin 
LOC440243             0.055   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC100133220          0.055   PREDICTED: hypothetical protein 
LOC283767             0.049   golgi autoantigen, golgin subfamily a-like 
MYH6                  0.045   myosin heavy chain 6 
CROCC                 0.045   ciliary rootlet coiled-coil 
LOC651807             0.045   PREDICTED: hypothetical protein 
NEFM                  0.044   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.044   neurofilament, medium polypeptide 150kDa isoform 2 ...
MYH2                  0.044   myosin, heavy chain 2, skeletal muscle, adult [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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