BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|209915556 cyclin D3 isoform 4 [Homo sapiens] (96 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|209915556 cyclin D3 isoform 4 [Homo sapiens] 189 3e-49 gi|209862835 cyclin D3 isoform 1 [Homo sapiens] 189 3e-49 gi|209915553 cyclin D3 isoform 3 [Homo sapiens] 189 3e-49 gi|4502619 cyclin D3 isoform 2 [Homo sapiens] 189 3e-49 gi|4502617 cyclin D2 [Homo sapiens] 89 8e-19 gi|16950655 cyclin D1 [Homo sapiens] 69 1e-12 gi|91208418 transcription elongation regulator 1 isoform 2 [Homo... 32 0.14 gi|21327715 transcription elongation regulator 1 isoform 1 [Homo... 32 0.14 gi|58331187 T-cell lymphoma invasion and metastasis 2 isoform a ... 31 0.24 gi|148276981 transmembrane protein 184A [Homo sapiens] 30 0.42 gi|48255891 protein kinase C substrate 80K-H isoform 2 [Homo sap... 30 0.54 gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo sap... 30 0.54 gi|149944526 additional sex combs like 3 [Homo sapiens] 29 0.71 gi|239757751 PREDICTED: hypothetical protein [Homo sapiens] 29 0.92 gi|239752261 PREDICTED: hypothetical protein XP_002348184 [Homo ... 29 0.92 gi|239746774 PREDICTED: hypothetical protein XP_002343845 [Homo ... 29 0.92 gi|194097398 protein tyrosine phosphatase, receptor type, G prec... 29 0.92 gi|28373194 adhesion regulating molecule 1 precursor [Homo sapiens] 29 0.92 gi|28373192 adhesion regulating molecule 1 precursor [Homo sapiens] 29 0.92 gi|42518068 trans-golgi network protein 2 [Homo sapiens] 29 0.92 gi|45935391 coiled-coil domain containing 69 [Homo sapiens] 29 0.92 gi|194248057 growth associated protein 43 isoform 1 [Homo sapiens] 29 0.92 gi|4503911 growth associated protein 43 isoform 2 [Homo sapiens] 29 0.92 gi|55925614 interferon, alpha-inducible protein 27 isoform 2 [Ho... 28 1.2 gi|194272171 interferon, alpha-inducible protein 27 isoform 1 [H... 28 1.2 gi|33563376 TBC1 domain family, member 16 [Homo sapiens] 28 1.2 gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 28 1.2 gi|5453638 AT rich interactive domain 3B [Homo sapiens] 28 1.2 gi|7661556 TruB pseudouridine (psi) synthase homolog 2 [Homo sap... 28 1.2 gi|239752785 PREDICTED: UPF0632 protein A [Homo sapiens] 28 1.6 >gi|209915556 cyclin D3 isoform 4 [Homo sapiens] Length = 96 Score = 189 bits (481), Expect = 3e-49 Identities = 96/96 (100%), Positives = 96/96 (100%) Query: 1 MYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLR 60 MYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLR Sbjct: 1 MYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLR 60 Query: 61 EASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL 96 EASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL Sbjct: 61 EASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL 96 >gi|209862835 cyclin D3 isoform 1 [Homo sapiens] Length = 211 Score = 189 bits (481), Expect = 3e-49 Identities = 96/96 (100%), Positives = 96/96 (100%) Query: 1 MYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLR 60 MYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLR Sbjct: 116 MYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLR 175 Query: 61 EASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL 96 EASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL Sbjct: 176 EASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL 211 >gi|209915553 cyclin D3 isoform 3 [Homo sapiens] Length = 220 Score = 189 bits (481), Expect = 3e-49 Identities = 96/96 (100%), Positives = 96/96 (100%) Query: 1 MYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLR 60 MYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLR Sbjct: 125 MYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLR 184 Query: 61 EASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL 96 EASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL Sbjct: 185 EASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL 220 >gi|4502619 cyclin D3 isoform 2 [Homo sapiens] Length = 292 Score = 189 bits (481), Expect = 3e-49 Identities = 96/96 (100%), Positives = 96/96 (100%) Query: 1 MYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLR 60 MYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLR Sbjct: 197 MYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLR 256 Query: 61 EASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL 96 EASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL Sbjct: 257 EASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL 292 >gi|4502617 cyclin D2 [Homo sapiens] Length = 289 Score = 89.0 bits (219), Expect = 8e-19 Identities = 55/101 (54%), Positives = 64/101 (63%), Gaps = 12/101 (11%) Query: 1 MYPPSMIATGSIGAAVQGLG----ACSMSGDELTELLAGITGTEVDCLRACQEQIEAALR 56 MYPPSMIATGS+GAA+ GL S++ D LTELLA IT T+VDCL+ACQEQIEA L Sbjct: 196 MYPPSMIATGSVGAAICGLQQDEEVSSLTCDALTELLAKITNTDVDCLKACQEQIEAVLL 255 Query: 57 ESLREASQTSSSPAPKAPRGSSSQGP-SQTSTPTDVTAIHL 96 SL++ Q GS S+ Q STPTDV I L Sbjct: 256 NSLQQYRQDQRD-------GSKSEDELDQASTPTDVRDIDL 289 >gi|16950655 cyclin D1 [Homo sapiens] Length = 295 Score = 68.6 bits (166), Expect = 1e-12 Identities = 42/98 (42%), Positives = 53/98 (54%), Gaps = 5/98 (5%) Query: 3 PPSMIATGSIGAAVQGLGACS----MSGDELTELLAGITGTEVDCLRACQEQIEAALRES 58 PPSM+A GS+ AAVQGL S +S LT L+ + + DCLRACQEQIEA L S Sbjct: 199 PPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEALLESS 258 Query: 59 LREASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL 96 LR+A Q + P + TPTDV + + Sbjct: 259 LRQAQQ-NMDPKAAEEEEEEEEEVDLACTPTDVRDVDI 295 >gi|91208418 transcription elongation regulator 1 isoform 2 [Homo sapiens] Length = 1077 Score = 31.6 bits (70), Expect = 0.14 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 2/49 (4%) Query: 48 QEQIEAALR-ESLREASQTSSSPAPKAPRGSSSQGPSQ-TSTPTDVTAI 94 Q Q++A ++ +++ ++ T+SSPAP +SS PS TST T T++ Sbjct: 244 QAQVQAQVQAQAVGASTPTTSSPAPAVSTSTSSSTPSSTTSTTTTATSV 292 >gi|21327715 transcription elongation regulator 1 isoform 1 [Homo sapiens] Length = 1098 Score = 31.6 bits (70), Expect = 0.14 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 2/49 (4%) Query: 48 QEQIEAALR-ESLREASQTSSSPAPKAPRGSSSQGPSQ-TSTPTDVTAI 94 Q Q++A ++ +++ ++ T+SSPAP +SS PS TST T T++ Sbjct: 244 QAQVQAQVQAQAVGASTPTTSSPAPAVSTSTSSSTPSSTTSTTTTATSV 292 >gi|58331187 T-cell lymphoma invasion and metastasis 2 isoform a [Homo sapiens] Length = 1701 Score = 30.8 bits (68), Expect = 0.24 Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 4/45 (8%) Query: 47 CQEQIEAALRESLREASQTSSSPAPKAPRGSSSQG-PSQTSTPTD 90 C E ++ LR S AS+TS P P+A RGSS+ PS +PTD Sbjct: 191 CSEPVQL-LRYSPTLASETS--PVPEARRGSSADSLPSHRPSPTD 232 >gi|148276981 transmembrane protein 184A [Homo sapiens] Length = 413 Score = 30.0 bits (66), Expect = 0.42 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Query: 62 ASQTSSSPAPKAPRGSSSQGPSQTSTPTDVT--AIH 95 A + +SPAP AP S S G +T +P D+ AIH Sbjct: 330 AEKKENSPAPPAPMQSISSGIRETVSPQDIVQDAIH 365 >gi|48255891 protein kinase C substrate 80K-H isoform 2 [Homo sapiens] Length = 525 Score = 29.6 bits (65), Expect = 0.54 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%) Query: 20 GACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREASQTSSSPAPKAP--RGS 77 G ++S E LL+G T T+ +++ AA+R+ R + + PAP AP Sbjct: 244 GDGALSEAEAQALLSGDTQTDATSF---YDRVWAAIRDKYRSEALPTDLPAPSAPDLTEP 300 Query: 78 SSQGPSQTSTPTD 90 + P S+PT+ Sbjct: 301 KEEQPPVPSSPTE 313 >gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo sapiens] Length = 528 Score = 29.6 bits (65), Expect = 0.54 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%) Query: 20 GACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREASQTSSSPAPKAP--RGS 77 G ++S E LL+G T T+ +++ AA+R+ R + + PAP AP Sbjct: 244 GDGALSEAEAQALLSGDTQTDATSF---YDRVWAAIRDKYRSEALPTDLPAPSAPDLTEP 300 Query: 78 SSQGPSQTSTPTD 90 + P S+PT+ Sbjct: 301 KEEQPPVPSSPTE 313 >gi|149944526 additional sex combs like 3 [Homo sapiens] Length = 2248 Score = 29.3 bits (64), Expect = 0.71 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Query: 11 SIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREASQTSSSPA 70 S+ +A + AC++S +L I GT+ C+ + IE+ + E S SSS Sbjct: 1266 SVDSANTTISACNIS------MLKTIQGTDTPCIAIIPKCIESTPISATTEGSSISSSMD 1319 Query: 71 PKAPRGSSSQGPSQTST 87 K SSS + ST Sbjct: 1320 DKQLLISSSSASNLVST 1336 >gi|239757751 PREDICTED: hypothetical protein [Homo sapiens] Length = 327 Score = 28.9 bits (63), Expect = 0.92 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Query: 50 QIEAALRESL-REASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTA 93 Q+E E + R T P P PRG + + P + +TP D A Sbjct: 148 QVEGQEEEGVVRLLEPTPQPPPPSPPRGLADRAPRRLNTPPDTLA 192 >gi|239752261 PREDICTED: hypothetical protein XP_002348184 [Homo sapiens] Length = 264 Score = 28.9 bits (63), Expect = 0.92 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Query: 50 QIEAALRESL-REASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTA 93 Q+E E + R T P P PRG + + P + +TP D A Sbjct: 85 QVEGQEEEGVVRLLEPTPQPPPPSPPRGLADRAPRRLNTPPDTLA 129 >gi|239746774 PREDICTED: hypothetical protein XP_002343845 [Homo sapiens] Length = 264 Score = 28.9 bits (63), Expect = 0.92 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Query: 50 QIEAALRESL-REASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTA 93 Q+E E + R T P P PRG + + P + +TP D A Sbjct: 85 QVEGQEEEGVVRLLEPTPQPPPPSPPRGLADRAPRRLNTPPDTLA 129 >gi|194097398 protein tyrosine phosphatase, receptor type, G precursor [Homo sapiens] Length = 1445 Score = 28.9 bits (63), Expect = 0.92 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 8/91 (8%) Query: 10 GSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREASQTSSSP 69 G G G DE +E G E D + +++ ++ + + E +QT SP Sbjct: 566 GDSSPTKDGEGTEEGEKDEKSESEDGEREHEEDGEKDSEKKEKSGVTHAAEERNQTEPSP 625 Query: 70 APKAPRGSSSQG--------PSQTSTPTDVT 92 P +P ++ G T+ PTD T Sbjct: 626 TPSSPNRTAEGGHQTIPGHEQDHTAVPTDQT 656 >gi|28373194 adhesion regulating molecule 1 precursor [Homo sapiens] Length = 407 Score = 28.9 bits (63), Expect = 0.92 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 4/66 (6%) Query: 18 GLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREASQTSSSPAPKAPRGS 77 GLGA ++G L LL G +G + AA+ S S T ++PAP AP + Sbjct: 182 GLGA--LTGPGLASLL-GSSGPPGSSSSSSSRSQSAAVTPS-STTSSTRATPAPSAPAAA 237 Query: 78 SSQGPS 83 S+ PS Sbjct: 238 SATSPS 243 >gi|28373192 adhesion regulating molecule 1 precursor [Homo sapiens] Length = 407 Score = 28.9 bits (63), Expect = 0.92 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 4/66 (6%) Query: 18 GLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREASQTSSSPAPKAPRGS 77 GLGA ++G L LL G +G + AA+ S S T ++PAP AP + Sbjct: 182 GLGA--LTGPGLASLL-GSSGPPGSSSSSSSRSQSAAVTPS-STTSSTRATPAPSAPAAA 237 Query: 78 SSQGPS 83 S+ PS Sbjct: 238 SATSPS 243 >gi|42518068 trans-golgi network protein 2 [Homo sapiens] Length = 437 Score = 28.9 bits (63), Expect = 0.92 Identities = 12/33 (36%), Positives = 17/33 (51%) Query: 58 SLREASQTSSSPAPKAPRGSSSQGPSQTSTPTD 90 S R T S P P+ P+ S S+ ++ TP D Sbjct: 47 SQRPGGSTKSHPEPQTPKDSPSKSSAEAQTPED 79 >gi|45935391 coiled-coil domain containing 69 [Homo sapiens] Length = 296 Score = 28.9 bits (63), Expect = 0.92 Identities = 17/39 (43%), Positives = 20/39 (51%) Query: 27 DELTELLAGITGTEVDCLRACQEQIEAALRESLREASQT 65 DE +L G + LRA EQ + AL S REAS T Sbjct: 91 DEQQRVLEGKNEEALQVLRASYEQEKEALTHSFREASST 129 >gi|194248057 growth associated protein 43 isoform 1 [Homo sapiens] Length = 274 Score = 28.9 bits (63), Expect = 0.92 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 48 QEQIEAALRESLREASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTA 93 +E+ +A ES +AS T +SP+ KA + + P Q P VTA Sbjct: 168 EEKAGSAETESATKAS-TDNSPSSKAEDAPAKEEPKQADVPAAVTA 212 >gi|4503911 growth associated protein 43 isoform 2 [Homo sapiens] Length = 238 Score = 28.9 bits (63), Expect = 0.92 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Query: 48 QEQIEAALRESLREASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTA 93 +E+ +A ES +AS T +SP+ KA + + P Q P VTA Sbjct: 132 EEKAGSAETESATKAS-TDNSPSSKAEDAPAKEEPKQADVPAAVTA 176 >gi|55925614 interferon, alpha-inducible protein 27 isoform 2 [Homo sapiens] Length = 119 Score = 28.5 bits (62), Expect = 1.2 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%) Query: 7 IATGSIGAAVQGLGACSMSGDELTELLAGITGTEV 41 +A+GS+ A +Q LGA +SG LT+ + G G+ + Sbjct: 79 VASGSLVATLQSLGATGLSG--LTKFILGSIGSAI 111 >gi|194272171 interferon, alpha-inducible protein 27 isoform 1 [Homo sapiens] Length = 122 Score = 28.5 bits (62), Expect = 1.2 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%) Query: 7 IATGSIGAAVQGLGACSMSGDELTELLAGITGTEV 41 +A+GS+ A +Q LGA +SG LT+ + G G+ + Sbjct: 82 VASGSLVATLQSLGATGLSG--LTKFILGSIGSAI 114 >gi|33563376 TBC1 domain family, member 16 [Homo sapiens] Length = 767 Score = 28.5 bits (62), Expect = 1.2 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 17/86 (19%) Query: 16 VQGLG-------ACSMSGDEL---TELLAGITGTEVDCLRACQEQIEAALRESLREASQT 65 +QGLG M DE+ T +LA + + + Q Q E ALR E+S Sbjct: 52 LQGLGEHHPGYLCLYMEKDEMLGATLILAWVPNSRI------QRQDEEALRYITPESSPV 105 Query: 66 SSSPAPKAPRGSSSQGPSQTSTPTDV 91 +P P+ R SS G S +PT++ Sbjct: 106 RKAPRPRGRRTRSS-GASHQPSPTEL 130 >gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo sapiens] Length = 1560 Score = 28.5 bits (62), Expect = 1.2 Identities = 11/27 (40%), Positives = 18/27 (66%) Query: 63 SQTSSSPAPKAPRGSSSQGPSQTSTPT 89 SQ S +PAP+ P + +GP +S+P+ Sbjct: 752 SQASPAPAPQIPAAAPLKGPGPSSSPS 778 >gi|5453638 AT rich interactive domain 3B [Homo sapiens] Length = 560 Score = 28.5 bits (62), Expect = 1.2 Identities = 17/76 (22%), Positives = 32/76 (42%) Query: 8 ATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREASQTSS 67 + ++ +G+ +MS D AG+ + + +L S +S + Sbjct: 480 SAAALNLTTSSIGSINMSVDIDGTTYAGVLFAQKPVVHLITGSAPQSLGSSASSSSSSHC 539 Query: 68 SPAPKAPRGSSSQGPS 83 SP+P + RG+ S PS Sbjct: 540 SPSPTSSRGTPSAEPS 555 >gi|7661556 TruB pseudouridine (psi) synthase homolog 2 [Homo sapiens] Length = 331 Score = 28.5 bits (62), Expect = 1.2 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Query: 42 DCLRACQEQIEAALRESLREASQTSSSPAPKAPRGSSSQGPSQT 85 D +RA Q+ A L +SL T P+P SQGPS T Sbjct: 281 DAIRAATPQVAAELEKSLSPGLDTKQLPSP--GWSWDSQGPSST 322 >gi|239752785 PREDICTED: UPF0632 protein A [Homo sapiens] Length = 517 Score = 28.1 bits (61), Expect = 1.6 Identities = 18/50 (36%), Positives = 22/50 (44%) Query: 38 GTEVDCLRACQEQIEAALRESLREASQTSSSPAPKAPRGSSSQGPSQTST 87 G EVD A Q A + TS+SPAP P + + PS T T Sbjct: 346 GLEVDHTPAGQAIHSPAPQSPAPSPEGTSTSPAPVTPAAAVPEAPSVTPT 395 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.308 0.122 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,810,583 Number of Sequences: 37866 Number of extensions: 144149 Number of successful extensions: 1497 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 55 Number of HSP's that attempted gapping in prelim test: 1411 Number of HSP's gapped (non-prelim): 140 length of query: 96 length of database: 18,247,518 effective HSP length: 67 effective length of query: 29 effective length of database: 15,710,496 effective search space: 455604384 effective search space used: 455604384 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.