Guide to the Human Genome
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Search of human proteins with 209915556

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|209915556 cyclin D3 isoform 4 [Homo sapiens]
         (96 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|209915556 cyclin D3 isoform 4 [Homo sapiens]                       189   3e-49
gi|209862835 cyclin D3 isoform 1 [Homo sapiens]                       189   3e-49
gi|209915553 cyclin D3 isoform 3 [Homo sapiens]                       189   3e-49
gi|4502619 cyclin D3 isoform 2 [Homo sapiens]                         189   3e-49
gi|4502617 cyclin D2 [Homo sapiens]                                    89   8e-19
gi|16950655 cyclin D1 [Homo sapiens]                                   69   1e-12
gi|91208418 transcription elongation regulator 1 isoform 2 [Homo...    32   0.14 
gi|21327715 transcription elongation regulator 1 isoform 1 [Homo...    32   0.14 
gi|58331187 T-cell lymphoma invasion and metastasis 2 isoform a ...    31   0.24 
gi|148276981 transmembrane protein 184A [Homo sapiens]                 30   0.42 
gi|48255891 protein kinase C substrate 80K-H isoform 2 [Homo sap...    30   0.54 
gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo sap...    30   0.54 
gi|149944526 additional sex combs like 3 [Homo sapiens]                29   0.71 
gi|239757751 PREDICTED: hypothetical protein [Homo sapiens]            29   0.92 
gi|239752261 PREDICTED: hypothetical protein XP_002348184 [Homo ...    29   0.92 
gi|239746774 PREDICTED: hypothetical protein XP_002343845 [Homo ...    29   0.92 
gi|194097398 protein tyrosine phosphatase, receptor type, G prec...    29   0.92 
gi|28373194 adhesion regulating molecule 1 precursor [Homo sapiens]    29   0.92 
gi|28373192 adhesion regulating molecule 1 precursor [Homo sapiens]    29   0.92 
gi|42518068 trans-golgi network protein 2 [Homo sapiens]               29   0.92 
gi|45935391 coiled-coil domain containing 69 [Homo sapiens]            29   0.92 
gi|194248057 growth associated protein 43 isoform 1 [Homo sapiens]     29   0.92 
gi|4503911 growth associated protein 43 isoform 2 [Homo sapiens]       29   0.92 
gi|55925614 interferon, alpha-inducible protein 27 isoform 2 [Ho...    28   1.2  
gi|194272171 interferon, alpha-inducible protein 27 isoform 1 [H...    28   1.2  
gi|33563376 TBC1 domain family, member 16 [Homo sapiens]               28   1.2  
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho...    28   1.2  
gi|5453638 AT rich interactive domain 3B [Homo sapiens]                28   1.2  
gi|7661556 TruB pseudouridine (psi) synthase homolog 2 [Homo sap...    28   1.2  
gi|239752785 PREDICTED: UPF0632 protein A [Homo sapiens]               28   1.6  

>gi|209915556 cyclin D3 isoform 4 [Homo sapiens]
          Length = 96

 Score =  189 bits (481), Expect = 3e-49
 Identities = 96/96 (100%), Positives = 96/96 (100%)

Query: 1  MYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLR 60
          MYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLR
Sbjct: 1  MYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLR 60

Query: 61 EASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL 96
          EASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL
Sbjct: 61 EASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL 96


>gi|209862835 cyclin D3 isoform 1 [Homo sapiens]
          Length = 211

 Score =  189 bits (481), Expect = 3e-49
 Identities = 96/96 (100%), Positives = 96/96 (100%)

Query: 1   MYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLR 60
           MYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLR
Sbjct: 116 MYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLR 175

Query: 61  EASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL 96
           EASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL
Sbjct: 176 EASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL 211


>gi|209915553 cyclin D3 isoform 3 [Homo sapiens]
          Length = 220

 Score =  189 bits (481), Expect = 3e-49
 Identities = 96/96 (100%), Positives = 96/96 (100%)

Query: 1   MYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLR 60
           MYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLR
Sbjct: 125 MYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLR 184

Query: 61  EASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL 96
           EASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL
Sbjct: 185 EASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL 220


>gi|4502619 cyclin D3 isoform 2 [Homo sapiens]
          Length = 292

 Score =  189 bits (481), Expect = 3e-49
 Identities = 96/96 (100%), Positives = 96/96 (100%)

Query: 1   MYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLR 60
           MYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLR
Sbjct: 197 MYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLR 256

Query: 61  EASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL 96
           EASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL
Sbjct: 257 EASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL 292


>gi|4502617 cyclin D2 [Homo sapiens]
          Length = 289

 Score = 89.0 bits (219), Expect = 8e-19
 Identities = 55/101 (54%), Positives = 64/101 (63%), Gaps = 12/101 (11%)

Query: 1   MYPPSMIATGSIGAAVQGLG----ACSMSGDELTELLAGITGTEVDCLRACQEQIEAALR 56
           MYPPSMIATGS+GAA+ GL       S++ D LTELLA IT T+VDCL+ACQEQIEA L 
Sbjct: 196 MYPPSMIATGSVGAAICGLQQDEEVSSLTCDALTELLAKITNTDVDCLKACQEQIEAVLL 255

Query: 57  ESLREASQTSSSPAPKAPRGSSSQGP-SQTSTPTDVTAIHL 96
            SL++  Q           GS S+    Q STPTDV  I L
Sbjct: 256 NSLQQYRQDQRD-------GSKSEDELDQASTPTDVRDIDL 289


>gi|16950655 cyclin D1 [Homo sapiens]
          Length = 295

 Score = 68.6 bits (166), Expect = 1e-12
 Identities = 42/98 (42%), Positives = 53/98 (54%), Gaps = 5/98 (5%)

Query: 3   PPSMIATGSIGAAVQGLGACS----MSGDELTELLAGITGTEVDCLRACQEQIEAALRES 58
           PPSM+A GS+ AAVQGL   S    +S   LT  L+ +   + DCLRACQEQIEA L  S
Sbjct: 199 PPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEALLESS 258

Query: 59  LREASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTAIHL 96
           LR+A Q +  P          +      TPTDV  + +
Sbjct: 259 LRQAQQ-NMDPKAAEEEEEEEEEVDLACTPTDVRDVDI 295


>gi|91208418 transcription elongation regulator 1 isoform 2 [Homo
           sapiens]
          Length = 1077

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 2/49 (4%)

Query: 48  QEQIEAALR-ESLREASQTSSSPAPKAPRGSSSQGPSQ-TSTPTDVTAI 94
           Q Q++A ++ +++  ++ T+SSPAP     +SS  PS  TST T  T++
Sbjct: 244 QAQVQAQVQAQAVGASTPTTSSPAPAVSTSTSSSTPSSTTSTTTTATSV 292


>gi|21327715 transcription elongation regulator 1 isoform 1 [Homo
           sapiens]
          Length = 1098

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 2/49 (4%)

Query: 48  QEQIEAALR-ESLREASQTSSSPAPKAPRGSSSQGPSQ-TSTPTDVTAI 94
           Q Q++A ++ +++  ++ T+SSPAP     +SS  PS  TST T  T++
Sbjct: 244 QAQVQAQVQAQAVGASTPTTSSPAPAVSTSTSSSTPSSTTSTTTTATSV 292


>gi|58331187 T-cell lymphoma invasion and metastasis 2 isoform a
           [Homo sapiens]
          Length = 1701

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 4/45 (8%)

Query: 47  CQEQIEAALRESLREASQTSSSPAPKAPRGSSSQG-PSQTSTPTD 90
           C E ++  LR S   AS+TS  P P+A RGSS+   PS   +PTD
Sbjct: 191 CSEPVQL-LRYSPTLASETS--PVPEARRGSSADSLPSHRPSPTD 232


>gi|148276981 transmembrane protein 184A [Homo sapiens]
          Length = 413

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 62  ASQTSSSPAPKAPRGSSSQGPSQTSTPTDVT--AIH 95
           A +  +SPAP AP  S S G  +T +P D+   AIH
Sbjct: 330 AEKKENSPAPPAPMQSISSGIRETVSPQDIVQDAIH 365


>gi|48255891 protein kinase C substrate 80K-H isoform 2 [Homo
           sapiens]
          Length = 525

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 20  GACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREASQTSSSPAPKAP--RGS 77
           G  ++S  E   LL+G T T+        +++ AA+R+  R  +  +  PAP AP     
Sbjct: 244 GDGALSEAEAQALLSGDTQTDATSF---YDRVWAAIRDKYRSEALPTDLPAPSAPDLTEP 300

Query: 78  SSQGPSQTSTPTD 90
             + P   S+PT+
Sbjct: 301 KEEQPPVPSSPTE 313


>gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo
           sapiens]
          Length = 528

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 20  GACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREASQTSSSPAPKAP--RGS 77
           G  ++S  E   LL+G T T+        +++ AA+R+  R  +  +  PAP AP     
Sbjct: 244 GDGALSEAEAQALLSGDTQTDATSF---YDRVWAAIRDKYRSEALPTDLPAPSAPDLTEP 300

Query: 78  SSQGPSQTSTPTD 90
             + P   S+PT+
Sbjct: 301 KEEQPPVPSSPTE 313


>gi|149944526 additional sex combs like 3 [Homo sapiens]
          Length = 2248

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 11   SIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREASQTSSSPA 70
            S+ +A   + AC++S      +L  I GT+  C+    + IE+    +  E S  SSS  
Sbjct: 1266 SVDSANTTISACNIS------MLKTIQGTDTPCIAIIPKCIESTPISATTEGSSISSSMD 1319

Query: 71   PKAPRGSSSQGPSQTST 87
             K    SSS   +  ST
Sbjct: 1320 DKQLLISSSSASNLVST 1336


>gi|239757751 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 327

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 50  QIEAALRESL-REASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTA 93
           Q+E    E + R    T   P P  PRG + + P + +TP D  A
Sbjct: 148 QVEGQEEEGVVRLLEPTPQPPPPSPPRGLADRAPRRLNTPPDTLA 192


>gi|239752261 PREDICTED: hypothetical protein XP_002348184 [Homo
           sapiens]
          Length = 264

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 50  QIEAALRESL-REASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTA 93
           Q+E    E + R    T   P P  PRG + + P + +TP D  A
Sbjct: 85  QVEGQEEEGVVRLLEPTPQPPPPSPPRGLADRAPRRLNTPPDTLA 129


>gi|239746774 PREDICTED: hypothetical protein XP_002343845 [Homo
           sapiens]
          Length = 264

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 50  QIEAALRESL-REASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTA 93
           Q+E    E + R    T   P P  PRG + + P + +TP D  A
Sbjct: 85  QVEGQEEEGVVRLLEPTPQPPPPSPPRGLADRAPRRLNTPPDTLA 129


>gi|194097398 protein tyrosine phosphatase, receptor type, G
           precursor [Homo sapiens]
          Length = 1445

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 8/91 (8%)

Query: 10  GSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREASQTSSSP 69
           G       G G      DE +E   G    E D  +  +++ ++ +  +  E +QT  SP
Sbjct: 566 GDSSPTKDGEGTEEGEKDEKSESEDGEREHEEDGEKDSEKKEKSGVTHAAEERNQTEPSP 625

Query: 70  APKAPRGSSSQG--------PSQTSTPTDVT 92
            P +P  ++  G           T+ PTD T
Sbjct: 626 TPSSPNRTAEGGHQTIPGHEQDHTAVPTDQT 656


>gi|28373194 adhesion regulating molecule 1 precursor [Homo sapiens]
          Length = 407

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 18  GLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREASQTSSSPAPKAPRGS 77
           GLGA  ++G  L  LL G +G       +      AA+  S    S T ++PAP AP  +
Sbjct: 182 GLGA--LTGPGLASLL-GSSGPPGSSSSSSSRSQSAAVTPS-STTSSTRATPAPSAPAAA 237

Query: 78  SSQGPS 83
           S+  PS
Sbjct: 238 SATSPS 243


>gi|28373192 adhesion regulating molecule 1 precursor [Homo sapiens]
          Length = 407

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 18  GLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREASQTSSSPAPKAPRGS 77
           GLGA  ++G  L  LL G +G       +      AA+  S    S T ++PAP AP  +
Sbjct: 182 GLGA--LTGPGLASLL-GSSGPPGSSSSSSSRSQSAAVTPS-STTSSTRATPAPSAPAAA 237

Query: 78  SSQGPS 83
           S+  PS
Sbjct: 238 SATSPS 243


>gi|42518068 trans-golgi network protein 2 [Homo sapiens]
          Length = 437

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 58 SLREASQTSSSPAPKAPRGSSSQGPSQTSTPTD 90
          S R    T S P P+ P+ S S+  ++  TP D
Sbjct: 47 SQRPGGSTKSHPEPQTPKDSPSKSSAEAQTPED 79


>gi|45935391 coiled-coil domain containing 69 [Homo sapiens]
          Length = 296

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 17/39 (43%), Positives = 20/39 (51%)

Query: 27  DELTELLAGITGTEVDCLRACQEQIEAALRESLREASQT 65
           DE   +L G     +  LRA  EQ + AL  S REAS T
Sbjct: 91  DEQQRVLEGKNEEALQVLRASYEQEKEALTHSFREASST 129


>gi|194248057 growth associated protein 43 isoform 1 [Homo sapiens]
          Length = 274

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 48  QEQIEAALRESLREASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTA 93
           +E+  +A  ES  +AS T +SP+ KA    + + P Q   P  VTA
Sbjct: 168 EEKAGSAETESATKAS-TDNSPSSKAEDAPAKEEPKQADVPAAVTA 212


>gi|4503911 growth associated protein 43 isoform 2 [Homo sapiens]
          Length = 238

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 48  QEQIEAALRESLREASQTSSSPAPKAPRGSSSQGPSQTSTPTDVTA 93
           +E+  +A  ES  +AS T +SP+ KA    + + P Q   P  VTA
Sbjct: 132 EEKAGSAETESATKAS-TDNSPSSKAEDAPAKEEPKQADVPAAVTA 176


>gi|55925614 interferon, alpha-inducible protein 27 isoform 2 [Homo
           sapiens]
          Length = 119

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 7   IATGSIGAAVQGLGACSMSGDELTELLAGITGTEV 41
           +A+GS+ A +Q LGA  +SG  LT+ + G  G+ +
Sbjct: 79  VASGSLVATLQSLGATGLSG--LTKFILGSIGSAI 111


>gi|194272171 interferon, alpha-inducible protein 27 isoform 1 [Homo
           sapiens]
          Length = 122

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 7   IATGSIGAAVQGLGACSMSGDELTELLAGITGTEV 41
           +A+GS+ A +Q LGA  +SG  LT+ + G  G+ +
Sbjct: 82  VASGSLVATLQSLGATGLSG--LTKFILGSIGSAI 114


>gi|33563376 TBC1 domain family, member 16 [Homo sapiens]
          Length = 767

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 17/86 (19%)

Query: 16  VQGLG-------ACSMSGDEL---TELLAGITGTEVDCLRACQEQIEAALRESLREASQT 65
           +QGLG          M  DE+   T +LA +  + +      Q Q E ALR    E+S  
Sbjct: 52  LQGLGEHHPGYLCLYMEKDEMLGATLILAWVPNSRI------QRQDEEALRYITPESSPV 105

Query: 66  SSSPAPKAPRGSSSQGPSQTSTPTDV 91
             +P P+  R  SS G S   +PT++
Sbjct: 106 RKAPRPRGRRTRSS-GASHQPSPTEL 130


>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
           sapiens]
          Length = 1560

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 63  SQTSSSPAPKAPRGSSSQGPSQTSTPT 89
           SQ S +PAP+ P  +  +GP  +S+P+
Sbjct: 752 SQASPAPAPQIPAAAPLKGPGPSSSPS 778


>gi|5453638 AT rich interactive domain 3B [Homo sapiens]
          Length = 560

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 17/76 (22%), Positives = 32/76 (42%)

Query: 8   ATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREASQTSS 67
           +  ++      +G+ +MS D      AG+   +   +         +L  S   +S +  
Sbjct: 480 SAAALNLTTSSIGSINMSVDIDGTTYAGVLFAQKPVVHLITGSAPQSLGSSASSSSSSHC 539

Query: 68  SPAPKAPRGSSSQGPS 83
           SP+P + RG+ S  PS
Sbjct: 540 SPSPTSSRGTPSAEPS 555


>gi|7661556 TruB pseudouridine (psi) synthase homolog 2 [Homo
           sapiens]
          Length = 331

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 42  DCLRACQEQIEAALRESLREASQTSSSPAPKAPRGSSSQGPSQT 85
           D +RA   Q+ A L +SL     T   P+P       SQGPS T
Sbjct: 281 DAIRAATPQVAAELEKSLSPGLDTKQLPSP--GWSWDSQGPSST 322


>gi|239752785 PREDICTED: UPF0632 protein A [Homo sapiens]
          Length = 517

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 18/50 (36%), Positives = 22/50 (44%)

Query: 38  GTEVDCLRACQEQIEAALRESLREASQTSSSPAPKAPRGSSSQGPSQTST 87
           G EVD   A Q     A +        TS+SPAP  P  +  + PS T T
Sbjct: 346 GLEVDHTPAGQAIHSPAPQSPAPSPEGTSTSPAPVTPAAAVPEAPSVTPT 395


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.308    0.122    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,810,583
Number of Sequences: 37866
Number of extensions: 144149
Number of successful extensions: 1497
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 1411
Number of HSP's gapped (non-prelim): 140
length of query: 96
length of database: 18,247,518
effective HSP length: 67
effective length of query: 29
effective length of database: 15,710,496
effective search space: 455604384
effective search space used: 455604384
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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