Guide to the Human Genome
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Name: TRUB2 Sequence: fasta or formatted (331aa) NCBI GI: 7661556
Description:

TruB pseudouridine (psi) synthase homolog 2

Referenced in:

tRNA Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         24           2
 C cysteine            1.5          5           1
 D aspartate           4.8         16           2
 E glutamate           5.7         19           2
 F phenylalanine       2.7          9           2
 G glycine             8.5         28           1
 H histidine           3.3         11           1
 I isoleucine          2.7          9           1
 K lysine              6.0         20           1
 L leucine            14.5         48           2
 M methionine          2.4          8           1
 N asparagine          1.8          6           1
 P proline             5.4         18           2
 Q glutamine           4.5         15           1
 R arginine            6.6         22           2
 S serine              5.1         17           2
 T threonine           7.3         24           2
 V valine              6.3         21           1
 W tryptophan          1.2          4           1
 Y tyrosine            2.1          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TruB pseudouridine (psi) synthase homolog 2 
TRUB1                 0.136   TruB pseudouridine (psi) synthase homolog 1 
SLFN12L               0.011   schlafen family member 12-like 
LOC100287907          0.008   PREDICTED: hypothetical protein 
LOC100287907          0.008   PREDICTED: hypothetical protein XP_002343168 
TSKS                  0.008   testis-specific kinase substrate 
SPTBN4                0.006   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
SEL1L                 0.006   sel-1 suppressor of lin-12-like 
INTU                  0.006   PDZ domain containing 6 
LOC100292482          0.005   PREDICTED: hypothetical protein 
GFI1                  0.005   growth factor independent 1 
GFI1                  0.005   growth factor independent 1 
GFI1                  0.005   growth factor independent 1 
CCND3                 0.005   cyclin D3 isoform 4 
CCND3                 0.005   cyclin D3 isoform 1 
CCND3                 0.005   cyclin D3 isoform 3 
CCND3                 0.005   cyclin D3 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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