Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ADRM1 Sequence: fasta or formatted (407aa) NCBI GI: 28373194
Description:

adhesion regulating molecule 1 precursor

Not currently referenced in the text

Other entries for this name:
alt mRNA {407aa} adhesion regulating molecule 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         43           3
 C cysteine            1.2          5           1
 D aspartate           4.9         20           2
 E glutamate           5.2         21           3
 F phenylalanine       2.9         12           2
 G glycine            10.3         42           2
 H histidine           1.0          4           1
 I isoleucine          2.5         10           2
 K lysine              4.7         19           2
 L leucine            10.3         42           2
 M methionine          2.9         12           1
 N asparagine          3.2         13           2
 P proline             8.4         34           2
 Q glutamine           5.9         24           2
 R arginine            2.7         11           1
 S serine             12.0         49           7
 T threonine           5.7         23           2
 V valine              3.9         16           1
 W tryptophan          0.5          2           1
 Y tyrosine            1.2          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   adhesion regulating molecule 1 precursor 
ADRM1                 1.000   adhesion regulating molecule 1 precursor 
COL11A1               0.037   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.037   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.037   alpha 1 type XI collagen isoform A preproprotein [Ho...
DACH1                 0.035   dachshund homolog 1 isoform b 
DACH1                 0.035   dachshund homolog 1 isoform a 
DACH1                 0.035   dachshund homolog 1 isoform c 
COL5A1                0.032   alpha 1 type V collagen preproprotein 
COL17A1               0.032   alpha 1 type XVII collagen 
COL1A1                0.032   alpha 1 type I collagen preproprotein 
COL5A3                0.031   collagen, type V, alpha 3 preproprotein 
COL16A1               0.031   alpha 1 type XVI collagen precursor 
COL1A2                0.029   alpha 2 type I collagen 
SP4                   0.029   Sp4 transcription factor 
SRCAP                 0.029   Snf2-related CBP activator protein 
TNRC18                0.028   trinucleotide repeat containing 18 
SNAP91                0.028   synaptosomal-associated protein, 91kDa homolog 
COL4A1                0.028   alpha 1 type IV collagen preproprotein 
LOC100291634          0.028   PREDICTED: hypothetical protein XP_002346062 
LOC100291096          0.028   PREDICTED: hypothetical protein XP_002346952 
LOC100287232          0.028   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.028   PREDICTED: hypothetical protein 
COL11A2               0.028   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.028   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.028   collagen, type XI, alpha 2 isoform 1 preproprotein ...
ATN1                  0.028   atrophin-1 
ATN1                  0.028   atrophin-1 
SRRM2                 0.027   splicing coactivator subunit SRm300 
COL27A1               0.027   collagen, type XXVII, alpha 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press