Guide to the Human Genome
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Name: LOC388630 Sequence: fasta or formatted (517aa) NCBI GI: 239752785
Description:

PREDICTED: UPF0632 protein A

Not currently referenced in the text

Other entries for this name:
alt mRNA {517aa} PREDICTED: UPF0632 protein A
alt mRNA {517aa} PREDICTED: UPF0632 protein A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         48           3
 C cysteine            1.2          6           1
 D aspartate           5.0         26           1
 E glutamate           4.8         25           2
 F phenylalanine       3.9         20           2
 G glycine             5.0         26           2
 H histidine           3.3         17           1
 I isoleucine          3.3         17           1
 K lysine              2.9         15           2
 L leucine            11.6         60           3
 M methionine          1.7          9           2
 N asparagine          3.7         19           2
 P proline            10.1         52           3
 Q glutamine           6.6         34           3
 R arginine            5.6         29           2
 S serine              6.8         35           3
 T threonine           6.4         33           2
 V valine              4.8         25           1
 W tryptophan          1.5          8           1
 Y tyrosine            2.5         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: UPF0632 protein A 
LOC388630             1.000   PREDICTED: UPF0632 protein A 
LOC388630             1.000   PREDICTED: UPF0632 protein A 
LOC129293             0.406   hypothetical protein LOC129293 
MLL2                  0.020   myeloid/lymphoid or mixed-lineage leukemia 2 
MADCAM1               0.018   mucosal vascular addressin cell adhesion molecule 1...
CRKRS                 0.017   Cdc2-related kinase, arginine/serine-rich isoform 2...
CRKRS                 0.017   Cdc2-related kinase, arginine/serine-rich isoform 1...
MUC2                  0.017   mucin 2 precursor 
RERE                  0.017   atrophin-1 like protein isoform b 
RERE                  0.017   atrophin-1 like protein isoform a 
RERE                  0.017   atrophin-1 like protein isoform a 
ZNF205                0.017   zinc finger protein 205 
ZNF205                0.017   zinc finger protein 205 
C6orf132              0.016   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.016   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.016   PREDICTED: hypothetical protein LOC647024 
BRD4                  0.015   bromodomain-containing protein 4 isoform long 
C9orf79               0.015   chromosome 9 open reading frame 79 
TENC1                 0.014   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.014   tensin like C1 domain containing phosphatase isoform...
TENC1                 0.014   tensin like C1 domain containing phosphatase isoform...
ATN1                  0.014   atrophin-1 
ATN1                  0.014   atrophin-1 
PCLO                  0.014   piccolo isoform 2 
PCLO                  0.014   piccolo isoform 1 
MEGF9                 0.014   multiple EGF-like-domains 9 
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
CDC42EP1              0.014   CDC42 effector protein 1 
TNKS1BP1              0.014   tankyrase 1-binding protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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