Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TCERG1 Sequence: fasta or formatted (1077aa) NCBI GI: 91208418
Description:

transcription elongation regulator 1 isoform 2

Referenced in:

RNA Polymerase and General Transcription Factors
WW Domain

Other entries for this name:
alt prot [1098aa] transcription elongation regulator 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9        107           3
 C cysteine            0.3          3           1
 D aspartate           4.5         49           2
 E glutamate          10.2        110           3
 F phenylalanine       3.1         33           2
 G glycine             3.0         32           2
 H histidine           1.4         15           2
 I isoleucine          3.9         42           2
 K lysine              8.9         96           3
 L leucine             5.2         56           3
 M methionine          3.3         36           2
 N asparagine          1.8         19           2
 P proline            11.0        118           5
 Q glutamine           6.9         74           3
 R arginine            6.4         69           2
 S serine              6.1         66           3
 T threonine           6.4         69           4
 V valine              4.9         53           2
 W tryptophan          1.2         13           1
 Y tyrosine            1.6         17           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcription elongation regulator 1 isoform 2 [Homo... 
TCERG1                0.994   transcription elongation regulator 1 isoform 1 [Homo...
TCERG1L               0.117   transcription elongation regulator 1-like 
PRPF40B               0.054   Huntingtin interacting protein C isoform 1 
PRPF40B               0.053   Huntingtin interacting protein C isoform 2 
PRPF40A               0.049   formin binding protein 3 
TCHH                  0.035   trichohyalin 
LOC283685             0.031   PREDICTED: golgi autoantigen, golgin subfamily a-li...
FLJ22184              0.028   PREDICTED: hypothetical protein FLJ22184 
NACA                  0.028   nascent polypeptide-associated complex alpha subuni...
ZNF207                0.028   zinc finger protein 207 isoform a 
WBP11                 0.028   WW domain binding protein 11 
FMN2                  0.028   formin 2 
ZNF207                0.028   zinc finger protein 207 isoform c 
GOLGA4                0.027   golgi autoantigen, golgin subfamily a, 4 
CIZ1                  0.026   CDKN1A interacting zinc finger protein 1 isoform 1 ...
CIZ1                  0.026   CDKN1A interacting zinc finger protein 1 isoform 1 [...
CPSF6                 0.026   cleavage and polyadenylation specific factor 6, 68 ...
WASF2                 0.026   WAS protein family, member 2 
FMN1                  0.025   formin 1 
SETD1B                0.024   SET domain containing 1B 
LOC727832             0.024   golgi autoantigen, golgin subfamily a-like 
KIAA0754              0.024   hypothetical protein LOC643314 
LOC283685             0.024   PREDICTED: golgi autoantigen, golgin subfamily a-li...
TSC22D2               0.024   TSC22 domain family, member 2 
C6orf132              0.024   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.024   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.024   PREDICTED: hypothetical protein LOC647024 
WASL                  0.023   Wiskott-Aldrich syndrome gene-like protein 
FLJ22184              0.023   PREDICTED: hypothetical protein FLJ22184 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press