Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CCND1 Sequence: fasta or formatted (295aa) NCBI GI: 16950655
Description:

cyclin D1

Referenced in:

Cyclins and Related Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         26           2
 C cysteine            4.4         13           2
 D aspartate           4.4         13           1
 E glutamate          11.5         34           9
 F phenylalanine       3.4         10           1
 G glycine             1.0          3           1
 H histidine           1.4          4           1
 I isoleucine          4.1         12           2
 K lysine              6.1         18           2
 L leucine            12.2         36           3
 M methionine          4.1         12           1
 N asparagine          4.1         12           2
 P proline             5.1         15           2
 Q glutamine           4.4         13           2
 R arginine            5.4         16           2
 S serine              5.4         16           2
 T threonine           4.4         13           1
 V valine              7.1         21           2
 W tryptophan          0.7          2           1
 Y tyrosine            2.0          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cyclin D1 
CCND2                 0.589   cyclin D2 
CCND3                 0.478   cyclin D3 isoform 2 
CCND3                 0.312   cyclin D3 isoform 1 
CCND3                 0.175   cyclin D3 isoform 3 
CCNA2                 0.127   cyclin A 
CCNE2                 0.120   cyclin E2 
CCNA1                 0.120   cyclin A1 isoform c 
CCNA1                 0.120   cyclin A1 isoform c 
CCNA1                 0.120   cyclin A1 isoform b 
CCNA1                 0.120   cyclin A1 isoform a 
CCNE1                 0.115   cyclin E1 isoform 1 
CCNE1                 0.115   cyclin E1 isoform 2 
CCNB1                 0.101   cyclin B1 
CCNB2                 0.094   cyclin B2 
CCNO                  0.078   cyclin domain containing 
CCND3                 0.078   cyclin D3 isoform 4 
CNTD2                 0.076   cyclin N-terminal domain containing 2 isoform 2 [Ho...
CCNG1                 0.071   cyclin G1 
CCNG1                 0.071   cyclin G1 
CCNJ                  0.069   cyclin J isoform 1 
CCNB3                 0.069   cyclin B3 isoform 3 
CCNF                  0.062   cyclin F 
CCNI                  0.060   cyclin I 
CCNB3                 0.044   cyclin B3 isoform 1 
CCNJ                  0.042   cyclin J isoform 2 
CCNH                  0.042   cyclin H 
CCNJ                  0.042   cyclin J isoform 3 
CCNI2                 0.041   cyclin I family, member 2 
CCNJL                 0.039   cyclin J-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press