Guide to the Human Genome
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Name: GAP43 Sequence: fasta or formatted (238aa) NCBI GI: 4503911
Description:

growth associated protein 43 isoform 2

Referenced in:

Calmodulin and Calcium

Other entries for this name:
alt prot [274aa] growth associated protein 43 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            19.7         47           4
 C cysteine            0.8          2           2
 D aspartate           7.6         18           3
 E glutamate          15.5         37           3
 F phenylalanine       0.4          1           1
 G glycine             5.9         14           1
 H histidine           1.3          3           1
 I isoleucine          2.1          5           1
 K lysine             12.2         29           2
 L leucine             0.8          2           1
 M methionine          0.8          2           1
 N asparagine          1.7          4           1
 P proline             7.1         17           2
 Q glutamine           5.0         12           1
 R arginine            2.1          5           2
 S serine              5.9         14           2
 T threonine           8.0         19           3
 V valine              2.9          7           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   growth associated protein 43 isoform 2 
GAP43                 0.950   growth associated protein 43 isoform 1 
BASP1                 0.093   brain abundant, membrane attached signal protein 1 [...
TCOF1                 0.093   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.093   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.093   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.093   Treacher Collins-Franceschetti syndrome 1 isoform c ...
TCOF1                 0.088   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.088   Treacher Collins-Franceschetti syndrome 1 isoform b ...
RP1L1                 0.088   retinitis pigmentosa 1-like 1 
MARCKS                0.084   myristoylated alanine-rich protein kinase C substra...
NEFM                  0.081   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.081   neurofilament, medium polypeptide 150kDa isoform 2 ...
NEFH                  0.079   neurofilament, heavy polypeptide 200kDa 
MDN1                  0.074   MDN1, midasin homolog 
SMTNL1                0.070   smoothelin-like 1 
NOLC1                 0.068   nucleolar and coiled-body phosphoprotein 1 
NCL                   0.065   nucleolin 
RPGR                  0.063   retinitis pigmentosa GTPase regulator isoform C [Hom...
FSCB                  0.063   fibrous sheath CABYR binding protein 
TGOLN2                0.063   trans-golgi network protein 2 
GNAS                  0.061   GNAS complex locus XLas 
SPEN                  0.061   spen homolog, transcriptional regulator 
MAP1B                 0.061   microtubule-associated protein 1B 
TRDN                  0.061   triadin 
NSBP1                 0.056   nucleosomal binding protein 1 
GTF2F1                0.056   general transcription factor IIF, polypeptide 1, 74...
ARMCX2                0.054   ALEX2 protein 
ARMCX2                0.054   ALEX2 protein 
MAP7D1                0.054   MAP7 domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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