Guide to the Human Genome
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Name: LOC100291411 Sequence: fasta or formatted (264aa) NCBI GI: 239752261
Description:

PREDICTED: hypothetical protein XP_002348184

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         16           2
 C cysteine            1.5          4           1
 D aspartate           3.4          9           1
 E glutamate           3.0          8           3
 F phenylalanine       1.1          3           1
 G glycine            12.9         34           2
 H histidine           3.0          8           1
 I isoleucine          1.1          3           1
 K lysine              3.8         10           2
 L leucine            10.6         28           2
 M methionine          0.8          2           1
 N asparagine          1.1          3           1
 P proline            14.0         37           4
 Q glutamine           5.7         15           1
 R arginine           11.7         31           2
 S serine              9.8         26           2
 T threonine           4.5         12           1
 V valine              4.2         11           2
 W tryptophan          0.4          1           1
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348184 
LOC100288664          1.000   PREDICTED: hypothetical protein XP_002343845 
LOC100293526          0.897   PREDICTED: hypothetical protein 
WIPF3                 0.050   WAS/WASL interacting protein family, member 3 [Homo...
LOC100292184          0.036   PREDICTED: hypothetical protein 
SYN3                  0.031   synapsin III isoform IIIg 
SYN3                  0.031   synapsin III isoform IIIa 
FOXC1                 0.029   forkhead box C1 
SH3BP2                0.029   SH3-domain binding protein 2 isoform b 
SH3BP2                0.029   SH3-domain binding protein 2 isoform c 
LOC100287920          0.029   PREDICTED: hypothetical protein XP_002344198 
SH3BP2                0.029   SH3-domain binding protein 2 isoform a 
SH3BP2                0.029   SH3-domain binding protein 2 isoform a 
WDR33                 0.027   WD repeat domain 33 isoform 1 
MLXIPL                0.027   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.027   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.027   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.027   Williams Beuren syndrome chromosome region 14 isofor...
ARHGAP17              0.027   nadrin isoform 1 
ARHGAP17              0.027   nadrin isoform 2 
PRDM6                 0.027   PR domain containing 6 
MEX3D                 0.025   ring finger and KH domain containing 1 
DAB2IP                0.025   disabled homolog 2 interacting protein isoform 2 [Ho...
DAB2IP                0.025   disabled homolog 2 interacting protein isoform 1 [Ho...
NACA                  0.025   nascent polypeptide-associated complex alpha subuni...
HCN4                  0.023   hyperpolarization activated cyclic nucleotide-gated p...
WASF1                 0.023   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.023   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.023   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.023   Wiskott-Aldrich syndrome protein family member 1 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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