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Search of human proteins with 205360991
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|205360991 nei endonuclease VIII-like 1 [Homo sapiens]
(390 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|205360991 nei endonuclease VIII-like 1 [Homo sapiens] 797 0.0
gi|209364528 nei like 2 isoform b [Homo sapiens] 45 1e-04
gi|209364526 nei like 2 isoform a [Homo sapiens] 45 1e-04
gi|21450800 nei like 2 isoform a [Homo sapiens] 45 1e-04
gi|209364530 nei like 2 isoform c [Homo sapiens] 44 3e-04
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 41 0.002
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 36 0.052
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 36 0.052
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 36 0.052
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 36 0.068
gi|21264353 SWI/SNF related, matrix associated, actin dependent ... 36 0.068
gi|51477704 SWI/SNF related, matrix associated, actin dependent ... 36 0.068
gi|51477702 SWI/SNF related, matrix associated, actin dependent ... 36 0.068
gi|239756899 PREDICTED: hypothetical protein [Homo sapiens] 35 0.12
gi|113427491 PREDICTED: hypothetical protein [Homo sapiens] 35 0.12
gi|239745902 PREDICTED: hypothetical protein [Homo sapiens] 35 0.12
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 35 0.12
gi|50962882 G patch domain containing 8 [Homo sapiens] 35 0.12
gi|14249338 BUD13 homolog isoform 1 [Homo sapiens] 35 0.15
gi|146219841 PNMA-like 2 [Homo sapiens] 35 0.15
gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 34 0.20
gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 34 0.20
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 34 0.20
gi|67190163 proteoglycan 4 isoform A [Homo sapiens] 34 0.20
gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo sap... 34 0.20
gi|4557733 latent transforming growth factor beta binding protei... 33 0.34
gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B ... 33 0.34
gi|38372935 brevican isoform 1 [Homo sapiens] 33 0.44
gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens] 33 0.44
gi|239753102 PREDICTED: hypothetical protein [Homo sapiens] 33 0.58
>gi|205360991 nei endonuclease VIII-like 1 [Homo sapiens]
Length = 390
Score = 797 bits (2059), Expect = 0.0
Identities = 390/390 (100%), Positives = 390/390 (100%)
Query: 1 MPEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEVPFESSAYRISASARGKELRLIL 60
MPEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEVPFESSAYRISASARGKELRLIL
Sbjct: 1 MPEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEVPFESSAYRISASARGKELRLIL 60
Query: 61 SPLPGAQPQQEPLALVFRFGMSGSFQLVPREELPRHAHLRFYTAPPGPRLALCFVDIRRF 120
SPLPGAQPQQEPLALVFRFGMSGSFQLVPREELPRHAHLRFYTAPPGPRLALCFVDIRRF
Sbjct: 61 SPLPGAQPQQEPLALVFRFGMSGSFQLVPREELPRHAHLRFYTAPPGPRLALCFVDIRRF 120
Query: 121 GRWDLGGKWQPGRGPCVLQEYQQFRENVLRNLADKAFDRPICEALLDQRFFNGIGNYLRA 180
GRWDLGGKWQPGRGPCVLQEYQQFRENVLRNLADKAFDRPICEALLDQRFFNGIGNYLRA
Sbjct: 121 GRWDLGGKWQPGRGPCVLQEYQQFRENVLRNLADKAFDRPICEALLDQRFFNGIGNYLRA 180
Query: 181 EILYRLKIPPFEKARSVLEALQQHRPSPELTLSQKIRTKLQNPDLLELCHSVPKEVVQLG 240
EILYRLKIPPFEKARSVLEALQQHRPSPELTLSQKIRTKLQNPDLLELCHSVPKEVVQLG
Sbjct: 181 EILYRLKIPPFEKARSVLEALQQHRPSPELTLSQKIRTKLQNPDLLELCHSVPKEVVQLG 240
Query: 241 GKGYGSESGEEDFAAFRAWLRCYGMPGMSSLQDRHGRTIWFQGDPGPLAPKGRKSRKKKS 300
GKGYGSESGEEDFAAFRAWLRCYGMPGMSSLQDRHGRTIWFQGDPGPLAPKGRKSRKKKS
Sbjct: 241 GKGYGSESGEEDFAAFRAWLRCYGMPGMSSLQDRHGRTIWFQGDPGPLAPKGRKSRKKKS 300
Query: 301 KATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPEGTSLQQDPEAPTVPKKGRR 360
KATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPEGTSLQQDPEAPTVPKKGRR
Sbjct: 301 KATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPEGTSLQQDPEAPTVPKKGRR 360
Query: 361 KGRQAASGHCRPRKVKADIPSLEPEGTSAS 390
KGRQAASGHCRPRKVKADIPSLEPEGTSAS
Sbjct: 361 KGRQAASGHCRPRKVKADIPSLEPEGTSAS 390
>gi|209364528 nei like 2 isoform b [Homo sapiens]
Length = 271
Score = 44.7 bits (104), Expect = 1e-04
Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 106 PGPRLALCFVDIRRFGRWDLGGKWQPGRGPCVLQEYQQFRENVLRNLADKAFDR--PICE 163
P PRL L F ++ W P V E R A +A + P+C
Sbjct: 100 PSPRLVLHFGGGGFLAFYNCQLSWSSS--PVVTPTCDILSEKFHRGQALEALGQAQPVCY 157
Query: 164 ALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEA 200
LLDQR+F+G+GN ++ E LYR I P SVL A
Sbjct: 158 TLLDQRYFSGLGNIIKNEALYRAGIHPLSLG-SVLSA 193
>gi|209364526 nei like 2 isoform a [Homo sapiens]
Length = 332
Score = 44.7 bits (104), Expect = 1e-04
Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 106 PGPRLALCFVDIRRFGRWDLGGKWQPGRGPCVLQEYQQFRENVLRNLADKAFDR--PICE 163
P PRL L F ++ W P V E R A +A + P+C
Sbjct: 161 PSPRLVLHFGGGGFLAFYNCQLSWSSS--PVVTPTCDILSEKFHRGQALEALGQAQPVCY 218
Query: 164 ALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEA 200
LLDQR+F+G+GN ++ E LYR I P SVL A
Sbjct: 219 TLLDQRYFSGLGNIIKNEALYRAGIHPLSLG-SVLSA 254
>gi|21450800 nei like 2 isoform a [Homo sapiens]
Length = 332
Score = 44.7 bits (104), Expect = 1e-04
Identities = 34/97 (35%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 106 PGPRLALCFVDIRRFGRWDLGGKWQPGRGPCVLQEYQQFRENVLRNLADKAFDR--PICE 163
P PRL L F ++ W P V E R A +A + P+C
Sbjct: 161 PSPRLVLHFGGGGFLAFYNCQLSWSSS--PVVTPTCDILSEKFHRGQALEALGQAQPVCY 218
Query: 164 ALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEA 200
LLDQR+F+G+GN ++ E LYR I P SVL A
Sbjct: 219 TLLDQRYFSGLGNIIKNEALYRAGIHPLSLG-SVLSA 254
>gi|209364530 nei like 2 isoform c [Homo sapiens]
Length = 216
Score = 43.5 bits (101), Expect = 3e-04
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 159 RPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEA 200
+P+C LLDQR+F+G+GN ++ E LYR I P SVL A
Sbjct: 98 QPVCYTLLDQRYFSGLGNIIKNEALYRAGIHPLSLG-SVLSA 138
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 40.8 bits (94), Expect = 0.002
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 8/111 (7%)
Query: 283 GDPGPLAPKG----RKSRKKKSKATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQ 338
G P PL P G R++R + S A S E+ PS P+ A+ P+ T
Sbjct: 294 GPPAPLPPPGGARARRARLQHSSALTASVEEGGVPGEDPSSRPATPELAE---PESAPTL 350
Query: 339 RPEGTSLQQDPEAPTVPKKGRRKGRQAASGHCRPRKVKADIPSLEPEGTSA 389
R E S + P P P G++ G +G C P KA+ PE ++
Sbjct: 351 RVEPPSPPEGPPNPG-PDGGKQDGEAPPAGPCAPATDKAEEVVCAPEDVAS 400
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 36.2 bits (82), Expect = 0.052
Identities = 37/152 (24%), Positives = 50/152 (32%), Gaps = 9/152 (5%)
Query: 240 GGKGYGSESGEEDFAAFRAWLRCYGMPGMSSLQDRHGRT-----IWFQGDPGPLAPKGRK 294
G KG G A + + G+PG S + G F G PGP +G K
Sbjct: 2641 GDKGEAGPPGRPGLAGHKGEMGEPGVPGQSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEK 2700
Query: 295 SRKKKSKATQL-SPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPEGTSLQQDPEAPT 353
+ P A PP S R L + + P G ++ AP
Sbjct: 2701 GERGTPGIGGFPGPSGNDGSAGPPGPPGSVGPRGPEGLQGQKGERGPPG---ERVVGAPG 2757
Query: 354 VPKKGRRKGRQAASGHCRPRKVKADIPSLEPE 385
VP +G Q G PR K + E +
Sbjct: 2758 VPGAPGERGEQGRPGPAGPRGEKGEAALTEDD 2789
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 36.2 bits (82), Expect = 0.052
Identities = 39/134 (29%), Positives = 51/134 (38%), Gaps = 14/134 (10%)
Query: 240 GGKGYGSESGEEDFAAFRAWLRCYGMPGMSSLQDRHGRTIWFQGDPGPLAPKGRKSRKKK 299
G KG ++GEE G+PG+ R G G PGPL P G K + K
Sbjct: 764 GPKGQAGQAGEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSI-GFPGPLGPIGEKGKSGK 822
Query: 300 SKATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPEGTSLQQDPEAPTVPKKGR 359
+ L E PP R +R P T P+G + QD AP +P +
Sbjct: 823 TGQPGLEGERG-----PPGS------RGERGQPGATGQPGPKG-DVGQD-GAPGIPGEKG 869
Query: 360 RKGRQAASGHCRPR 373
G Q G P+
Sbjct: 870 LPGLQGPPGFPGPK 883
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 36.2 bits (82), Expect = 0.052
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 20/116 (17%)
Query: 290 PKGRKSRKKKSKATQLSPEDRVEDALPPSKAPSR-----TRRAKRDLPKRTATQRPEGTS 344
PK R +R+ ++ SPE + + PP + SR TR+A+ R+A+ PE S
Sbjct: 1663 PKSRTARR----GSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRS 1718
Query: 345 LQ----------QDPEAPTVPKKGRRKGRQAASGHCRPRKVKADIPSLEPEGTSAS 390
PE P + R+ R A+S + + PS +P G S
Sbjct: 1719 RTPPRHRRSPSVSSPE-PAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRS 1773
Score = 29.3 bits (64), Expect = 6.4
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 24/106 (22%)
Query: 290 PKGRKSRKKKSKATQL----SPEDRVE-DALPPSKAPSRTRRAKRDLPKRTATQRPEGTS 344
P G++SR S+ + SP++R E D+ P SKA +RT +R
Sbjct: 1532 PLGQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQR--------------- 1576
Query: 345 LQQDPEAPTVPKKGRRKGRQAASGHCRPRKVKADIPSLEPEGTSAS 390
+ +P V K R R++ SG K D P P S S
Sbjct: 1577 -SRSGSSPEVDSKSRLSPRRSRSGSSPEVK---DKPRAAPRAQSGS 1618
Score = 29.3 bits (64), Expect = 6.4
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 291 KGRKSRKKKSKATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPEGTSLQQDPE 350
KGR + S +T+ SPE PP +R PK + P S + PE
Sbjct: 1643 KGRGPSPEGSSSTESSPEH------PPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPE 1696
Query: 351 APTVPKKGRRKGRQAASGHCRPR 373
+ RR ++S R R
Sbjct: 1697 LTRKARLSRRSRSASSSPETRSR 1719
Score = 28.9 bits (63), Expect = 8.3
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 277 RTIWFQGDPGPLAPKGRKSRKKKSKATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTA 336
RT +G +P+ R+SR + SP+ R P SR+R +R R+A
Sbjct: 498 RTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSA 557
Query: 337 TQRPEGTSLQQDP------EAPTVPKKGRRKGRQAASGHCRPR 373
+ G S + P + T ++GR + R A R R
Sbjct: 558 RR---GRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSR 597
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 35.8 bits (81), Expect = 0.068
Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 29/138 (21%)
Query: 247 ESGEEDFAAFRAWLRCYGMPGMSSLQDRHGRTIWFQGDPGPLAPKGRKSRKKKSKATQLS 306
ES EE+F F + S+L+ + GR AP+GR +K K T L
Sbjct: 117 ESDEEEFQGFHSDEDVAPSSLRSALRSQRGR-----------APRGRG---RKHKTTPLP 162
Query: 307 PEDRVEDALPPSKAPSRTR---------RAKRDLPKRT-ATQRPEGTSLQQDPEAPTVPK 356
P + A P K P+R R +A +L +R A Q P + + P+ P+
Sbjct: 163 PPRLADVAPTPPKTPARKRGEEGTERMVQALTELLRRAQAPQAPRSRACE-----PSTPR 217
Query: 357 KGRRKGRQAASGHCRPRK 374
+ R + +G CR ++
Sbjct: 218 RSRGRPPGRPAGPCRRKQ 235
Score = 29.6 bits (65), Expect = 4.9
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 305 LSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPEGT--SLQQDPEAPTVPKKGRRKG 362
L+ ED A PSR+RR K + P G+ +L P ++P +K
Sbjct: 904 LATED-TSSASETESVPSRSRRGKVEAAGPGGESEPTGSGGTLAHTPRR-SLPSHHGKKM 961
Query: 363 RQAASGHCR 371
R A GHCR
Sbjct: 962 RMARCGHCR 970
>gi|21264353 SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily d, member 3 isoform 1
[Homo sapiens]
Length = 470
Score = 35.8 bits (81), Expect = 0.068
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 19/125 (15%)
Query: 266 PGMSSLQDRHGRTIWFQGDPGPLAPKGRKSRKKKSKATQLSPEDRVEDALPPSKAPSRTR 325
PG S Q QG P P AP +S K++ A ++ P+ R+ + +P S+A
Sbjct: 63 PGQSQAQS--------QGQPVPTAPARSRSAKRRKMADKILPQ-RIRELVPESQAYMDLL 113
Query: 326 RAKRDLPKRTATQRPEGTSLQQDPEAPTVPKKGRRKGRQAASGHCRPRKVKADIPSLEPE 385
+R L + +R + EA P K +RK R S P K A+ + +
Sbjct: 114 AFERKLDQTIMRKRVD------IQEALKRPMKQKRKLRLYISNTFNPAKPDAE----DSD 163
Query: 386 GTSAS 390
G+ AS
Sbjct: 164 GSIAS 168
>gi|51477704 SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily d, member 3 isoform 1
[Homo sapiens]
Length = 470
Score = 35.8 bits (81), Expect = 0.068
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 19/125 (15%)
Query: 266 PGMSSLQDRHGRTIWFQGDPGPLAPKGRKSRKKKSKATQLSPEDRVEDALPPSKAPSRTR 325
PG S Q QG P P AP +S K++ A ++ P+ R+ + +P S+A
Sbjct: 63 PGQSQAQS--------QGQPVPTAPARSRSAKRRKMADKILPQ-RIRELVPESQAYMDLL 113
Query: 326 RAKRDLPKRTATQRPEGTSLQQDPEAPTVPKKGRRKGRQAASGHCRPRKVKADIPSLEPE 385
+R L + +R + EA P K +RK R S P K A+ + +
Sbjct: 114 AFERKLDQTIMRKRVD------IQEALKRPMKQKRKLRLYISNTFNPAKPDAE----DSD 163
Query: 386 GTSAS 390
G+ AS
Sbjct: 164 GSIAS 168
>gi|51477702 SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily d, member 3 isoform 2
[Homo sapiens]
Length = 483
Score = 35.8 bits (81), Expect = 0.068
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 19/125 (15%)
Query: 266 PGMSSLQDRHGRTIWFQGDPGPLAPKGRKSRKKKSKATQLSPEDRVEDALPPSKAPSRTR 325
PG S Q QG P P AP +S K++ A ++ P+ R+ + +P S+A
Sbjct: 76 PGQSQAQS--------QGQPVPTAPARSRSAKRRKMADKILPQ-RIRELVPESQAYMDLL 126
Query: 326 RAKRDLPKRTATQRPEGTSLQQDPEAPTVPKKGRRKGRQAASGHCRPRKVKADIPSLEPE 385
+R L + +R + EA P K +RK R S P K A+ + +
Sbjct: 127 AFERKLDQTIMRKRVD------IQEALKRPMKQKRKLRLYISNTFNPAKPDAE----DSD 176
Query: 386 GTSAS 390
G+ AS
Sbjct: 177 GSIAS 181
>gi|239756899 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 35.0 bits (79), Expect = 0.12
Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 282 QGDPG----PLAPKGRKSRKKKSKATQLSPEDRVEDAL--------PPSKAPSRTRRAKR 329
+GDPG P AP+ +R + A + PE R D + ++TR K
Sbjct: 61 RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM 120
Query: 330 DLPKRTATQRPEGTSLQQDPEAPTVPKKGRRKGRQAASGHCRPR 373
LP R T L+ + AP VP GR SG PR
Sbjct: 121 GLPDSARRPRAPRTPLRPERPAPGVP-GGRVAPCTCTSGSPSPR 163
>gi|113427491 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 35.0 bits (79), Expect = 0.12
Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 282 QGDPG----PLAPKGRKSRKKKSKATQLSPEDRVEDAL--------PPSKAPSRTRRAKR 329
+GDPG P AP+ +R + A + PE R D + ++TR K
Sbjct: 61 RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM 120
Query: 330 DLPKRTATQRPEGTSLQQDPEAPTVPKKGRRKGRQAASGHCRPR 373
LP R T L+ + AP VP GR SG PR
Sbjct: 121 GLPDSARRPRAPRTPLRPERPAPGVP-GGRVAPCTCTSGSPSPR 163
>gi|239745902 PREDICTED: hypothetical protein [Homo sapiens]
Length = 371
Score = 35.0 bits (79), Expect = 0.12
Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 13/104 (12%)
Query: 282 QGDPG----PLAPKGRKSRKKKSKATQLSPEDRVEDAL--------PPSKAPSRTRRAKR 329
+GDPG P AP+ +R + A + PE R D + ++TR K
Sbjct: 61 RGDPGVAPSPPAPEDSDARGEDGAAAERRPEPRTRDLSGARGQTTGGEGREGAQTREGKM 120
Query: 330 DLPKRTATQRPEGTSLQQDPEAPTVPKKGRRKGRQAASGHCRPR 373
LP R T L+ + AP VP GR SG PR
Sbjct: 121 GLPDSARRPRAPRTPLRPERPAPGVP-GGRVAPCTCTSGSPSPR 163
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 35.0 bits (79), Expect = 0.12
Identities = 26/87 (29%), Positives = 33/87 (37%)
Query: 266 PGMSSLQDRHGRTIWFQGDPGPLAPKGRKSRKKKSKATQLSPEDRVEDALPPSKAPSRTR 325
PG SL G + PL+P + S LSP+ D LPP +P T
Sbjct: 886 PGEPSLSPLLGEPALSEPGEPPLSPLPEELPLSPSGEPSLSPQLMPPDPLPPPLSPIITA 945
Query: 326 RAKRDLPKRTATQRPEGTSLQQDPEAP 352
A L + P G DPE+P
Sbjct: 946 AAPPALSPLGELEYPFGAKGDSDPESP 972
>gi|50962882 G patch domain containing 8 [Homo sapiens]
Length = 1502
Score = 35.0 bits (79), Expect = 0.12
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 282 QGDPGPLAPKGRKSRKKKSKATQLSPEDRVEDALPP---SKAPSRTRRAKRDLPKRTATQ 338
+ + G + K +K ++KK+K++ + +R PP S AP R RR +D +R +
Sbjct: 701 KAESGEKSKKRKKRKRKKNKSSAPADSERGPKPEPPGSGSPAPPRRRRRAQDDSQRRSLP 760
Query: 339 RPEGTSLQQD 348
EG+S ++D
Sbjct: 761 AEEGSSGKKD 770
>gi|14249338 BUD13 homolog isoform 1 [Homo sapiens]
Length = 619
Score = 34.7 bits (78), Expect = 0.15
Identities = 35/131 (26%), Positives = 51/131 (38%), Gaps = 27/131 (20%)
Query: 263 YGMPGMSSLQDRHGRTIWFQGDPGPLAPKGRKSRKKKSKATQLSPEDRVEDALPP----- 317
+G P S +DRH DP P R++R + L D PP
Sbjct: 133 HGTPDPSPRKDRHDTP-----DPSP-----RRARHDTPDPSPLRGARHDSDTSPPRRIRH 182
Query: 318 -SKAPSRTRRAKRDLPKRTATQRPEGTS-------LQQDPEAPTVPKKGRRKGRQAASGH 369
S S RRA+ D P + +RP+ S ++ D P+ P R+ R +S
Sbjct: 183 DSSDTSPPRRARHDSPDPSPPRRPQHNSSGASPRRVRHDSPDPSPP----RRARHGSSDI 238
Query: 370 CRPRKVKADIP 380
PR+V + P
Sbjct: 239 SSPRRVHNNSP 249
>gi|146219841 PNMA-like 2 [Homo sapiens]
Length = 635
Score = 34.7 bits (78), Expect = 0.15
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 290 PKGRKSRKKKSKATQLSPEDRVEDALPPSKAPSR-TRRAKRDLPKRTATQRPEGTSLQQD 348
P+ R SRK ++K + +P PP+ + +R TR R + ++ G+
Sbjct: 525 PEDRASRKPRAKRARTAPRGLTPAGAPPTASGARKTRAGGRGRGRGVTPEKKAGSRGSAQ 584
Query: 349 PEAPTVPKKGRRKGRQAASGHCRPRKVKADIPS 381
+A KK KG A H R + K P+
Sbjct: 585 DDAAGSRKK---KGSAGAGAHARAGEAKGQAPT 614
>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
Length = 1270
Score = 34.3 bits (77), Expect = 0.20
Identities = 31/107 (28%), Positives = 40/107 (37%), Gaps = 13/107 (12%)
Query: 284 DPGPLAPKGRKSRKKKSKATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPEGT 343
+P P PK K A P AP+ + PK TA P+GT
Sbjct: 529 EPAPTTPKAAAPNTPKEPAP----------TTPKEPAPTTPKEPAPTTPKETAPTTPKGT 578
Query: 344 SLQQDPE-APTVPKKGRRKGRQAASGHCRPRKVKADIPS-LEPEGTS 388
+ E APT PKK K A + P D P+ P+GT+
Sbjct: 579 APTTLKEPAPTTPKKPAPK-ELAPTTTKEPTSTTCDKPAPTTPKGTA 624
Score = 33.1 bits (74), Expect = 0.44
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 284 DPGPLAPKGRKSRKKKSKATQLSPE----DRVEDALPPSKAPSRTRRAKRDLPKRTATQR 339
+P P PK + + K+ + T P D+ P AP+ + PK A
Sbjct: 585 EPAPTTPK-KPAPKELAPTTTKEPTSTTCDKPAPTTPKGTAPTTPKEPAPTTPKEPAPTT 643
Query: 340 PEGTSLQQDPE-APTVPKK 357
P+GT+ E APT PKK
Sbjct: 644 PKGTAPTTLKEPAPTTPKK 662
Score = 31.2 bits (69), Expect = 1.7
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 285 PGPLAPKGRKSRKKKSKA--TQLSPEDRVEDALPPS--KAPSRTRRAKRDLPKRTATQRP 340
P P PKG K A T P P+ K P+ T K+ PK A
Sbjct: 615 PAPTTPKGTAPTTPKEPAPTTPKEPAPTTPKGTAPTTLKEPAPTT-PKKPAPKELAPTTT 673
Query: 341 EG-TSLQQDPEAPTVPKK 357
+G TS D APT PK+
Sbjct: 674 KGPTSTTSDKPAPTTPKE 691
Score = 30.4 bits (67), Expect = 2.9
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 13/76 (17%)
Query: 284 DPGPLAPK--GRKSRKKKSKATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPE 341
+P P PK + KK + T P P AP+ T++ PK A P+
Sbjct: 425 EPAPTTPKEPAPTTPKKPAPTTPKEPAPTT----PKEPAPTTTKKPAPTTPKEPAPTTPK 480
Query: 342 GTSLQQDPEAPTVPKK 357
T APT PKK
Sbjct: 481 ET-------APTTPKK 489
>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
Length = 1311
Score = 34.3 bits (77), Expect = 0.20
Identities = 31/107 (28%), Positives = 40/107 (37%), Gaps = 13/107 (12%)
Query: 284 DPGPLAPKGRKSRKKKSKATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPEGT 343
+P P PK K A P AP+ + PK TA P+GT
Sbjct: 570 EPAPTTPKAAAPNTPKEPAP----------TTPKEPAPTTPKEPAPTTPKETAPTTPKGT 619
Query: 344 SLQQDPE-APTVPKKGRRKGRQAASGHCRPRKVKADIPS-LEPEGTS 388
+ E APT PKK K A + P D P+ P+GT+
Sbjct: 620 APTTLKEPAPTTPKKPAPK-ELAPTTTKEPTSTTCDKPAPTTPKGTA 665
Score = 33.1 bits (74), Expect = 0.44
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 284 DPGPLAPKGRKSRKKKSKATQLSPE----DRVEDALPPSKAPSRTRRAKRDLPKRTATQR 339
+P P PK + + K+ + T P D+ P AP+ + PK A
Sbjct: 626 EPAPTTPK-KPAPKELAPTTTKEPTSTTCDKPAPTTPKGTAPTTPKEPAPTTPKEPAPTT 684
Query: 340 PEGTSLQQDPE-APTVPKK 357
P+GT+ E APT PKK
Sbjct: 685 PKGTAPTTLKEPAPTTPKK 703
Score = 31.2 bits (69), Expect = 1.7
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 285 PGPLAPKGRKSRKKKSKA--TQLSPEDRVEDALPPS--KAPSRTRRAKRDLPKRTATQRP 340
P P PKG K A T P P+ K P+ T K+ PK A
Sbjct: 656 PAPTTPKGTAPTTPKEPAPTTPKEPAPTTPKGTAPTTLKEPAPTT-PKKPAPKELAPTTT 714
Query: 341 EG-TSLQQDPEAPTVPKK 357
+G TS D APT PK+
Sbjct: 715 KGPTSTTSDKPAPTTPKE 732
Score = 30.4 bits (67), Expect = 2.9
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 13/76 (17%)
Query: 284 DPGPLAPK--GRKSRKKKSKATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPE 341
+P P PK + KK + T P P AP+ T++ PK A P+
Sbjct: 466 EPAPTTPKEPAPTTPKKPAPTTPKEPAPTT----PKEPAPTTTKKPAPTTPKEPAPTTPK 521
Query: 342 GTSLQQDPEAPTVPKK 357
T APT PKK
Sbjct: 522 ET-------APTTPKK 530
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 34.3 bits (77), Expect = 0.20
Identities = 31/107 (28%), Positives = 40/107 (37%), Gaps = 13/107 (12%)
Query: 284 DPGPLAPKGRKSRKKKSKATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPEGT 343
+P P PK K A P AP+ + PK TA P+GT
Sbjct: 622 EPAPTTPKAAAPNTPKEPAP----------TTPKEPAPTTPKEPAPTTPKETAPTTPKGT 671
Query: 344 SLQQDPE-APTVPKKGRRKGRQAASGHCRPRKVKADIPS-LEPEGTS 388
+ E APT PKK K A + P D P+ P+GT+
Sbjct: 672 APTTLKEPAPTTPKKPAPK-ELAPTTTKEPTSTTCDKPAPTTPKGTA 717
Score = 33.1 bits (74), Expect = 0.44
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 284 DPGPLAPKGRKSRKKKSKATQLSPE----DRVEDALPPSKAPSRTRRAKRDLPKRTATQR 339
+P P PK + + K+ + T P D+ P AP+ + PK A
Sbjct: 678 EPAPTTPK-KPAPKELAPTTTKEPTSTTCDKPAPTTPKGTAPTTPKEPAPTTPKEPAPTT 736
Query: 340 PEGTSLQQDPE-APTVPKK 357
P+GT+ E APT PKK
Sbjct: 737 PKGTAPTTLKEPAPTTPKK 755
Score = 31.2 bits (69), Expect = 1.7
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 285 PGPLAPKGRKSRKKKSKA--TQLSPEDRVEDALPPS--KAPSRTRRAKRDLPKRTATQRP 340
P P PKG K A T P P+ K P+ T K+ PK A
Sbjct: 708 PAPTTPKGTAPTTPKEPAPTTPKEPAPTTPKGTAPTTLKEPAPTT-PKKPAPKELAPTTT 766
Query: 341 EG-TSLQQDPEAPTVPKK 357
+G TS D APT PK+
Sbjct: 767 KGPTSTTSDKPAPTTPKE 784
Score = 30.4 bits (67), Expect = 2.9
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 13/76 (17%)
Query: 284 DPGPLAPK--GRKSRKKKSKATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPE 341
+P P PK + KK + T P P AP+ T++ PK A P+
Sbjct: 518 EPAPTTPKEPAPTTPKKPAPTTPKEPAPTT----PKEPAPTTTKKPAPTTPKEPAPTTPK 573
Query: 342 GTSLQQDPEAPTVPKK 357
T APT PKK
Sbjct: 574 ET-------APTTPKK 582
>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
Length = 1404
Score = 34.3 bits (77), Expect = 0.20
Identities = 31/107 (28%), Positives = 40/107 (37%), Gaps = 13/107 (12%)
Query: 284 DPGPLAPKGRKSRKKKSKATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPEGT 343
+P P PK K A P AP+ + PK TA P+GT
Sbjct: 663 EPAPTTPKAAAPNTPKEPAP----------TTPKEPAPTTPKEPAPTTPKETAPTTPKGT 712
Query: 344 SLQQDPE-APTVPKKGRRKGRQAASGHCRPRKVKADIPS-LEPEGTS 388
+ E APT PKK K A + P D P+ P+GT+
Sbjct: 713 APTTLKEPAPTTPKKPAPK-ELAPTTTKEPTSTTCDKPAPTTPKGTA 758
Score = 33.1 bits (74), Expect = 0.44
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 284 DPGPLAPKGRKSRKKKSKATQLSPE----DRVEDALPPSKAPSRTRRAKRDLPKRTATQR 339
+P P PK + + K+ + T P D+ P AP+ + PK A
Sbjct: 719 EPAPTTPK-KPAPKELAPTTTKEPTSTTCDKPAPTTPKGTAPTTPKEPAPTTPKEPAPTT 777
Query: 340 PEGTSLQQDPE-APTVPKK 357
P+GT+ E APT PKK
Sbjct: 778 PKGTAPTTLKEPAPTTPKK 796
Score = 31.2 bits (69), Expect = 1.7
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 285 PGPLAPKGRKSRKKKSKA--TQLSPEDRVEDALPPS--KAPSRTRRAKRDLPKRTATQRP 340
P P PKG K A T P P+ K P+ T K+ PK A
Sbjct: 749 PAPTTPKGTAPTTPKEPAPTTPKEPAPTTPKGTAPTTLKEPAPTT-PKKPAPKELAPTTT 807
Query: 341 EG-TSLQQDPEAPTVPKK 357
+G TS D APT PK+
Sbjct: 808 KGPTSTTSDKPAPTTPKE 825
Score = 30.4 bits (67), Expect = 2.9
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 13/76 (17%)
Query: 284 DPGPLAPK--GRKSRKKKSKATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPE 341
+P P PK + KK + T P P AP+ T++ PK A P+
Sbjct: 559 EPAPTTPKEPAPTTPKKPAPTTPKEPAPTT----PKEPAPTTTKKPAPTTPKEPAPTTPK 614
Query: 342 GTSLQQDPEAPTVPKK 357
T APT PKK
Sbjct: 615 ET-------APTTPKK 623
>gi|33620745 pre-mRNA cleavage complex II protein Pcf11 [Homo
sapiens]
Length = 1555
Score = 34.3 bits (77), Expect = 0.20
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 21/113 (18%)
Query: 266 PGMSSLQDRHGRTIWFQGDPGPLAPKGRKSRKKKSKATQLSP---------------EDR 310
PG SS + R P +PK R R K + +SP +
Sbjct: 471 PGRSSTRKRSRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGAKQSH 530
Query: 311 VEDALPPSKAPSRTRRA-KRDLP-----KRTATQRPEGTSLQQDPEAPTVPKK 357
+E+ PPS+ +R+ K+D+ K+T +RP+ T+ Q ++ T PK+
Sbjct: 531 MEEFTPPSREDRNAKRSTKQDIRDPRRMKKTEEERPQETTNQHSTKSGTEPKE 583
>gi|4557733 latent transforming growth factor beta binding protein 2
[Homo sapiens]
Length = 1821
Score = 33.5 bits (75), Expect = 0.34
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 293 RKSRKKKSKATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPEGTSLQQDPEAP 352
R SR ++S+ Q + R L + RTR A LP+ QR AP
Sbjct: 105 RPSRAQQSRRVQPPAQTRRSTPLGQQQPAPRTRAAPA-LPRLGTPQRSGA--------AP 155
Query: 353 TVPKKGRRKGRQAASGHCRP 372
P +GR GR G C P
Sbjct: 156 PTPPRGRLTGRNVCGGQCCP 175
>gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B
subunit [Homo sapiens]
Length = 2339
Score = 33.5 bits (75), Expect = 0.34
Identities = 29/108 (26%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
Query: 272 QDRHGRTIWFQGDPGPLAPKGRKSRKKKSKATQLSPEDRVEDALPPSKAPSRTRRAKRDL 331
QDR G+PG + R R +A PE R E P R R +R
Sbjct: 866 QDRAEAPKAESGEPGAREERPRPHRSHSKEAAG-PPEARSERGRGPGPEGGR-RHHRRGS 923
Query: 332 PKRTATQRPEG--TSLQQDPEAPTVPKKGRRKGRQAASGHCRPRKVKA 377
P+ A + P QDP KG R+ R PR+ ++
Sbjct: 924 PEEAAEREPRRHRAHRHQDPSKECAGAKGERRARHRGGPRAGPREAES 971
>gi|38372935 brevican isoform 1 [Homo sapiens]
Length = 911
Score = 33.1 bits (74), Expect = 0.44
Identities = 19/74 (25%), Positives = 29/74 (39%)
Query: 299 KSKATQLSPEDRVEDALPPSKAPSRTRRAKRDLPKRTATQRPEGTSLQQDPEAPTVPKKG 358
+ ++ + + LP ++AP TR + + P GTS+Q P PT
Sbjct: 579 RGESEETGSSEGAPSLLPATRAPEGTRELEAPSEDNSGRTAPAGTSVQAQPVLPTDSASR 638
Query: 359 RRKGRQAASGHCRP 372
ASG C P
Sbjct: 639 GGVAVVPASGDCVP 652
>gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens]
Length = 860
Score = 33.1 bits (74), Expect = 0.44
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 282 QGDPGPLAPKGRKSRKK-KSKATQLSPEDRVEDALPPSKAPSRTRR--AKRDLPKRTATQ 338
+G P P GRKSRK+ + + L R++ P + P R A+ R T+
Sbjct: 68 RGAPVSFRPGGRKSRKELRKEKRHLRKARRLQRTAGPEQGPGLGGRSGAEEASGHRQDTE 127
Query: 339 RPEGTSLQQDPEAPTVPKKGRRKGR-QAASGHCRP 372
+ +DP P P+ R K + AA+ RP
Sbjct: 128 ERARPAPSRDPSPPRKPRPSRVKAKATAATAKTRP 162
>gi|239753102 PREDICTED: hypothetical protein [Homo sapiens]
Length = 252
Score = 32.7 bits (73), Expect = 0.58
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 309 DRVEDALPPSKAPSRTRRAKRDLPKRT------ATQRPE-GTSLQQDPEAPTVP 355
DR++D PP P ++R + P+ A Q PE G + ++D EAPT P
Sbjct: 70 DRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPTFP 123
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,790,715
Number of Sequences: 37866
Number of extensions: 932408
Number of successful extensions: 4098
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 152
Number of HSP's that attempted gapping in prelim test: 3855
Number of HSP's gapped (non-prelim): 411
length of query: 390
length of database: 18,247,518
effective HSP length: 104
effective length of query: 286
effective length of database: 14,309,454
effective search space: 4092503844
effective search space used: 4092503844
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.