Guide to the Human Genome
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Name: NEIL2 Sequence: fasta or formatted (332aa) NCBI GI: 21450800
Description:

nei like 2 isoform a

Referenced in:

DNases, Recombination, and DNA Repair

Other entries for this name:
alt mRNA [332aa] nei like 2 isoform a
alt prot [271aa] nei like 2 isoform b
alt prot [216aa] nei like 2 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         19           2
 C cysteine            2.1          7           1
 D aspartate           4.8         16           2
 E glutamate           6.6         22           2
 F phenylalanine       4.8         16           1
 G glycine             9.6         32           4
 H histidine           2.7          9           2
 I isoleucine          1.2          4           2
 K lysine              5.4         18           2
 L leucine             9.9         33           2
 M methionine          0.9          3           1
 N asparagine          1.5          5           1
 P proline             7.8         26           2
 Q glutamine           8.7         29           2
 R arginine            5.1         17           2
 S serine              8.7         29           3
 T threonine           3.0         10           1
 V valine              6.9         23           2
 W tryptophan          2.4          8           2
 Y tyrosine            1.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nei like 2 isoform a 
NEIL2                 1.000   nei like 2 isoform a 
NEIL2                 0.816   nei like 2 isoform b 
NEIL2                 0.501   nei like 2 isoform c 
NEIL3                 0.051   nei endonuclease VIII-like 3 
NEIL1                 0.030   nei endonuclease VIII-like 1 
PER1                  0.015   period 1 
HOXD11                0.015   homeobox D11 
RAI1                  0.015   retinoic acid induced 1 
TACC2                 0.015   transforming, acidic coiled-coil containing protein ...
TACC2                 0.015   transforming, acidic coiled-coil containing protein ...
NOL3                  0.012   nucleolar protein 3 
C2orf55               0.012   hypothetical protein LOC343990 
ZFHX2                 0.012   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.012   PREDICTED: zinc finger homeobox 2 
ZFHX2                 0.012   PREDICTED: zinc finger homeobox 2 
PRR12                 0.010   proline rich 12 
FRMPD1                0.010   FERM and PDZ domain containing 1 
NOLC1                 0.010   nucleolar and coiled-body phosphoprotein 1 
TCEAL6                0.010   transcription elongation factor A (SII)-like 6 [Hom...
USP4                  0.010   ubiquitin specific protease 4 isoform b 
ZMYND15               0.010   zinc finger, MYND-type containing 15 isoform 1 [Hom...
ZMYND15               0.010   zinc finger, MYND-type containing 15 isoform 2 [Homo...
CCDC96                0.010   coiled-coil domain containing 96 
MARCKS                0.009   myristoylated alanine-rich protein kinase C substra...
NUFIP2                0.009   nuclear fragile X mental retardation protein interac...
MEX3C                 0.009   ring finger and KH domain containing 2 
PLEKHO2               0.009   pleckstrin homology domain containing, family O memb...
NFATC4                0.007   nuclear factor of activated T-cells, cytoplasmic, c...
NFATC4                0.007   nuclear factor of activated T-cells, cytoplasmic, ca...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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