Guide to the Human Genome
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Name: NEIL1 Sequence: fasta or formatted (390aa) NCBI GI: 205360991
Description:

nei endonuclease VIII-like 1

Referenced in:

DNases, Recombination, and DNA Repair

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         31           2
 C cysteine            2.1          8           1
 D aspartate           3.6         14           1
 E glutamate           7.2         28           2
 F phenylalanine       4.4         17           2
 G glycine             7.9         31           2
 H histidine           1.8          7           1
 I isoleucine          2.6         10           1
 K lysine              6.2         24           3
 L leucine            10.3         40           2
 M methionine          1.0          4           1
 N asparagine          1.8          7           1
 P proline             9.7         38           2
 Q glutamine           5.6         22           2
 R arginine           10.5         41           2
 S serine              7.4         29           2
 T threonine           2.8         11           1
 V valine              4.4         17           2
 W tryptophan          1.0          4           1
 Y tyrosine            1.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nei endonuclease VIII-like 1 
NEIL2                 0.026   nei like 2 isoform b 
NEIL2                 0.026   nei like 2 isoform a 
NEIL2                 0.026   nei like 2 isoform a 
NEIL2                 0.025   nei like 2 isoform c 
C2orf55               0.021   hypothetical protein LOC343990 
COL7A1                0.014   alpha 1 type VII collagen precursor 
COL5A3                0.014   collagen, type V, alpha 3 preproprotein 
SRRM2                 0.014   splicing coactivator subunit SRm300 
MLL4                  0.014   myeloid/lymphoid or mixed-lineage leukemia 4 
SMARCD3               0.014   SWI/SNF related, matrix associated, actin dependent ...
SMARCD3               0.014   SWI/SNF related, matrix associated, actin dependent ...
SMARCD3               0.014   SWI/SNF related, matrix associated, actin dependent ...
LOC729417             0.013   PREDICTED: hypothetical protein 
LOC729417             0.013   PREDICTED: hypothetical protein 
LOC729417             0.013   PREDICTED: hypothetical protein 
MLL2                  0.013   myeloid/lymphoid or mixed-lineage leukemia 2 
GPATCH8               0.013   G patch domain containing 8 
BUD13                 0.013   BUD13 homolog isoform 1 
PNMAL2                0.013   PNMA-like 2 
PRG4                  0.012   proteoglycan 4 isoform D 
PRG4                  0.012   proteoglycan 4 isoform C 
PRG4                  0.012   proteoglycan 4 isoform B 
PRG4                  0.012   proteoglycan 4 isoform A 
PCF11                 0.012   pre-mRNA cleavage complex II protein Pcf11 
LTBP2                 0.010   latent transforming growth factor beta binding protei...
CACNA1B               0.010   calcium channel, voltage-dependent, N type, alpha 1B ...
BCAN                  0.010   brevican isoform 1 
NOM1                  0.010   nucleolar protein with MIF4G domain 1 
LOC100292909          0.010   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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