Search of human proteins with 20373175

Search of human proteins with 20373175

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|20373175 musashi 2 isoform a [Homo sapiens]
         (328 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|20373175 musashi 2 isoform a [Homo sapiens]                        682   0.0  
gi|4505255 musashi 1 [Homo sapiens]                                   490   e-139
gi|25121993 musashi 2 isoform b [Homo sapiens]                        463   e-131
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo...   194   9e-50
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ...   194   9e-50
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ...   189   3e-48
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ...   179   4e-45
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]         177   9e-45
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]         177   9e-45
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ...   175   6e-44
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ...   171   6e-43
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ...   167   9e-42
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap...   167   2e-41
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b...   166   3e-41
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor...   165   4e-41
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform...   165   4e-41
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ...   163   2e-40
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom...   160   1e-39
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom...   160   1e-39
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi...   155   6e-38
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl...   145   5e-35
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl...   145   5e-35
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc...   143   2e-34
gi|6678271 TAR DNA binding protein [Homo sapiens]                      91   2e-18
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]               83   4e-16
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]               83   4e-16
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]       80   2e-15
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]      80   2e-15
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila...    79   6e-15
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]                      77   2e-14

>gi|20373175 musashi 2 isoform a [Homo sapiens]
          Length = 328

 Score =  682 bits (1759), Expect = 0.0
 Identities = 328/328 (100%), Positives = 328/328 (100%)

Query: 1   MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR 60
           MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
Sbjct: 1   MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR 60

Query: 61  SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN 120
           SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
Sbjct: 61  SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN 120

Query: 121 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV 180
           TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
Sbjct: 121 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV 180

Query: 181 ECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQ 240
           ECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQ
Sbjct: 181 ECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQ 240

Query: 241 FPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNYIS 300
           FPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNYIS
Sbjct: 241 FPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNYIS 300

Query: 301 AASPQPGSGFGHGIAGPLIATAFTNGYH 328
           AASPQPGSGFGHGIAGPLIATAFTNGYH
Sbjct: 301 AASPQPGSGFGHGIAGPLIATAFTNGYH 328


>gi|4505255 musashi 1 [Homo sapiens]
          Length = 362

 Score =  490 bits (1261), Expect = e-139
 Identities = 249/349 (71%), Positives = 273/349 (78%), Gaps = 35/349 (10%)

Query: 15  DSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPAS 74
           DS HDP KMFIGGLSWQT+ + LR+YF +FGE++EC+VMRDP TKRSRGFGFVTF D A 
Sbjct: 14  DSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAG 73

Query: 75  VDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFG 134
           VDKVL Q  HELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLS NT VEDVKQYFEQFG
Sbjct: 74  VDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFG 133

Query: 135 KVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPP 194
           KV+DAMLMFDKTTNRHRGFGFVTFE+ED+VEKVCEIHFHEINNKMVECKKAQPKEVM P 
Sbjct: 134 KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPT 193

Query: 195 GT-RGRARGLPYTMDAFMLGMGMLGYPNFVAT--YGRGYPGFAPSYGYQFPGF------- 244
           G+ RGR+R +PY MDAFMLG+GMLGYP F AT    R Y G AP Y YQFP F       
Sbjct: 194 GSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYTYQFPEFRVERTPL 253

Query: 245 ------------PAAAYGPVAAAAVAAA--RGSGSN-----------PARPGGFPGANSP 279
                       P  AYGP+AAAA AAA  RG+GS+           P+R GGF G  SP
Sbjct: 254 PSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGSTPSRTGGFLGTTSP 313

Query: 280 GPVADLYGPASQDSGVGNYISAASPQPGSGFGHGIAGPLIATAFTNGYH 328
           GP+A+LYG A+QDSGV +YISAASP P +GFGH + GPLIATAFTNGYH
Sbjct: 314 GPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNGYH 362



 Score = 75.1 bits (183), Expect = 8e-14
 Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 98  PRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVT 157
           P  A P       K+F+GGLS  T  E +++YF QFG+V++ ++M D  T R RGFGFVT
Sbjct: 8   PGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVT 67

Query: 158 FENEDVVEKVCEIHFHEINNKMVECK-----KAQPKEV 190
           F ++  V+KV     HE+++K ++ K     +AQPK V
Sbjct: 68  FMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMV 105


>gi|25121993 musashi 2 isoform b [Homo sapiens]
          Length = 251

 Score =  463 bits (1192), Expect = e-131
 Identities = 221/223 (99%), Positives = 222/223 (99%)

Query: 22  KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
           KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ
Sbjct: 18  KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 77

Query: 82  PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 141
           PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML
Sbjct: 78  PHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAML 137

Query: 142 MFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRAR 201
           MFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRAR
Sbjct: 138 MFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRAR 197

Query: 202 GLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPGF 244
           GLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFP +
Sbjct: 198 GLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPDY 240



 Score = 75.1 bits (183), Expect = 8e-14
 Identities = 38/91 (41%), Positives = 58/91 (63%), Gaps = 5/91 (5%)

Query: 105 MVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVV 164
           M + + K+F+GGLS  T  + ++ YF +FG++ + M+M D TT R RGFGFVTF +   V
Sbjct: 12  MFSPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASV 71

Query: 165 EKVCEIHFHEINNKMVECK-----KAQPKEV 190
           +KV     HE+++K ++ K     +AQPK V
Sbjct: 72  DKVLGQPHHELDSKTIDPKVAFPRRAQPKMV 102


>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
           sapiens]
          Length = 420

 Score =  194 bits (493), Expect = 9e-50
 Identities = 118/294 (40%), Positives = 156/294 (53%), Gaps = 25/294 (8%)

Query: 6   SQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFG 65
           ++G+  +A+ +Q D GKMFIGGLSW TS   L +Y S+FGE+ +C +  DP T RSRGFG
Sbjct: 133 AEGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFG 192

Query: 66  FVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVED 125
           FV F D ASVDKVL    H+LD K IDPK    R    K     KK+FVGGLS +T  E 
Sbjct: 193 FVLFKDAASVDKVLELKEHKLDGKLIDPK----RAKALKGKEPPKKVFVGGLSPDTSEEQ 248

Query: 126 VKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 185
           +K+YF  FG++E+  L  D  TN  RGF F+T+ +E+ V+K+ E  +H+I +   E K A
Sbjct: 249 IKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVA 308

Query: 186 QPKEVMFPP----------------GTRGRARGLPYTMDAFMLGMGMLGYPNFVATYG-- 227
           QPKEV                    GTRGR RG     +         GY N+ + YG  
Sbjct: 309 QPKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGD 368

Query: 228 RGYPGFAPSYGYQFPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGP 281
           + Y G+    GY + G+    YG     A  + + S    A  GG    N+  P
Sbjct: 369 QNYSGYG---GYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNHQNNYQP 419


>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
           [Homo sapiens]
          Length = 332

 Score =  194 bits (493), Expect = 9e-50
 Identities = 110/259 (42%), Positives = 145/259 (55%), Gaps = 17/259 (6%)

Query: 4   NGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRG 63
           NG++G   +A+ ++ D GKMF+GGLSW TS   L+DYF+KFGE+ +C +  DP T RSRG
Sbjct: 53  NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 112

Query: 64  FGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVV 123
           FGF+ F D ASV+KVL Q  H LD + IDPK A   +  P      KKIFVGGL+     
Sbjct: 113 FGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDP-----VKKIFVGGLNPEATE 167

Query: 124 EDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECK 183
           E +++YF +FG++E   L  D   N+ RGF F+TF+ E+ V+KV E  FH ++    E K
Sbjct: 168 EKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIK 227

Query: 184 KAQPKEV----MFPPGTRGRARGLPYTMDAFMLGMGM-----LGYPNFVATYGRGY-PGF 233
            AQPKEV     +  G RG              G G       GY N+    G GY  G+
Sbjct: 228 VAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNY-WNQGYGYQQGY 286

Query: 234 APSY-GYQFPGFPAAAYGP 251
            P Y GY +  +    YGP
Sbjct: 287 GPGYGGYDYSPYGYYGYGP 305


>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
           [Homo sapiens]
          Length = 285

 Score =  189 bits (480), Expect = 3e-48
 Identities = 97/204 (47%), Positives = 128/204 (62%), Gaps = 10/204 (4%)

Query: 4   NGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRG 63
           NG++G   +A+ ++ D GKMF+GGLSW TS   L+DYF+KFGE+ +C +  DP T RSRG
Sbjct: 53  NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 112

Query: 64  FGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVV 123
           FGF+ F D ASV+KVL Q  H LD + IDPK A   +  P      KKIFVGGL+     
Sbjct: 113 FGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDP-----VKKIFVGGLNPEATE 167

Query: 124 EDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECK 183
           E +++YF +FG++E   L  D   N+ RGF F+TF+ E+ V+KV E  FH ++    E K
Sbjct: 168 EKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEKKFHTVSGSKCEIK 227

Query: 184 KAQPKEV----MFPPGTRG-RARG 202
            AQPKEV     +  G RG R RG
Sbjct: 228 VAQPKEVYQQQQYGSGGRGNRNRG 251


>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
           [Homo sapiens]
          Length = 336

 Score =  179 bits (453), Expect = 4e-45
 Identities = 103/250 (41%), Positives = 133/250 (53%), Gaps = 19/250 (7%)

Query: 6   SQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFG 65
           S+G    A+ ++ D GKMFIGGLSW T+   L+DYFSKFGE+ +C +  DP T RSRGFG
Sbjct: 63  SEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 122

Query: 66  FVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVED 125
           FV F +  SVDKV+ Q  H+L+ K IDPK    R    K     KKIFVGGLS +T  E 
Sbjct: 123 FVLFKESESVDKVMDQKEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPEEK 178

Query: 126 VKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 185
           +++YF  FG+VE   L  D  TN+ RGF F+TF+ E+ V+K+ E  +H +     E K A
Sbjct: 179 IREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 238

Query: 186 QPKEVM-----------FPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFA 234
             KE             F    RGR  G     +         GY N    YG    G+ 
Sbjct: 239 MSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGN----YGYNSQGYG 294

Query: 235 PSYGYQFPGF 244
              GY + G+
Sbjct: 295 GYGGYDYTGY 304


>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
          Length = 378

 Score =  177 bits (450), Expect = 9e-45
 Identities = 109/310 (35%), Positives = 159/310 (51%), Gaps = 51/310 (16%)

Query: 14  NDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPA 73
           N    + GK+F+GGL W T+ ++LR YFS++GE+ +C++M+D TT +SRGFGFV F DP 
Sbjct: 3   NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN 62

Query: 74  SVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMV--------------TRTKKIFVGGLSA 119
            V  VL    H LD + IDPK   PR  QP+                +++ KIFVGG+  
Sbjct: 63  CVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPH 122

Query: 120 NTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKM 179
           N    ++++YF++FG V + ++++D    R RGFGF+TFE+E  V++   +HFH+I  K 
Sbjct: 123 NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKK 182

Query: 180 VECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATY-GRGYPGFAPSYG 238
           VE K+A+P++      ++ +A G P          G    PN    + G+  P +   YG
Sbjct: 183 VEVKRAEPRD------SKSQAPGQPGASQ-----WGSRVVPNAANGWAGQPPPTWQQGYG 231

Query: 239 YQFPGFPA----AAYGPVAAAAVAAARGSGSNP---------ARPGGFP-------GANS 278
            Q    PA      YGP       A RG+   P           PGGFP       G  +
Sbjct: 232 PQGMWVPAGQAIGGYGP-----PPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGA 286

Query: 279 PGPVADLYGP 288
           P   +  YGP
Sbjct: 287 PPQFSFGYGP 296


>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
          Length = 407

 Score =  177 bits (450), Expect = 9e-45
 Identities = 109/310 (35%), Positives = 159/310 (51%), Gaps = 51/310 (16%)

Query: 14  NDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPA 73
           N    + GK+F+GGL W T+ ++LR YFS++GE+ +C++M+D TT +SRGFGFV F DP 
Sbjct: 3   NSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN 62

Query: 74  SVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMV--------------TRTKKIFVGGLSA 119
            V  VL    H LD + IDPK   PR  QP+                +++ KIFVGG+  
Sbjct: 63  CVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPH 122

Query: 120 NTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKM 179
           N    ++++YF++FG V + ++++D    R RGFGF+TFE+E  V++   +HFH+I  K 
Sbjct: 123 NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKK 182

Query: 180 VECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATY-GRGYPGFAPSYG 238
           VE K+A+P++      ++ +A G P          G    PN    + G+  P +   YG
Sbjct: 183 VEVKRAEPRD------SKSQAPGQPGASQ-----WGSRVVPNAANGWAGQPPPTWQQGYG 231

Query: 239 YQFPGFPA----AAYGPVAAAAVAAARGSGSNP---------ARPGGFP-------GANS 278
            Q    PA      YGP       A RG+   P           PGGFP       G  +
Sbjct: 232 PQGMWVPAGQAIGGYGP-----PPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGA 286

Query: 279 PGPVADLYGP 288
           P   +  YGP
Sbjct: 287 PPQFSFGYGP 296


>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
           [Homo sapiens]
          Length = 287

 Score =  175 bits (443), Expect = 6e-44
 Identities = 95/204 (46%), Positives = 121/204 (59%), Gaps = 11/204 (5%)

Query: 6   SQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFG 65
           S+G    A+ ++ D GKMFIGGLSW T+   L+DYFSKFGE+ +C +  DP T RSRGFG
Sbjct: 63  SEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFG 122

Query: 66  FVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVED 125
           FV F +  SVDKV+ Q  H+L+ K IDPK    R    K     KKIFVGGLS +T  E 
Sbjct: 123 FVLFKESESVDKVMDQKEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPEEK 178

Query: 126 VKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKA 185
           +++YF  FG+VE   L  D  TN+ RGF F+TF+ E+ V+K+ E  +H +     E K A
Sbjct: 179 IREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 238

Query: 186 QPKEVMFPP-------GTRGRARG 202
             KE            G  GRARG
Sbjct: 239 MSKEQYQQQQQWGSRGGFAGRARG 262


>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
           [Homo sapiens]
          Length = 355

 Score =  171 bits (434), Expect = 6e-43
 Identities = 101/252 (40%), Positives = 130/252 (51%), Gaps = 19/252 (7%)

Query: 4   NGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRG 63
           + S      A  +Q +  KMFIGGLSW T+   L+DYFSKFGE+ +C +  DP T RSRG
Sbjct: 80  SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139

Query: 64  FGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVV 123
           FGFV F +  SVDKV+ Q  H+L+ K IDPK    R    K     KKIFVGGLS +T  
Sbjct: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPE 195

Query: 124 EDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECK 183
           E +++YF  FG+VE   L  D  TN+ RGF F+TF+ E+ V+K+ E  +H +     E K
Sbjct: 196 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIK 255

Query: 184 KAQPKEVM-----------FPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPG 232
            A  KE             F    RGR  G     +         GY N    YG    G
Sbjct: 256 VAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGN----YGYNSQG 311

Query: 233 FAPSYGYQFPGF 244
           +    GY + G+
Sbjct: 312 YGGYGGYDYTGY 323


>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
           [Homo sapiens]
          Length = 306

 Score =  167 bits (424), Expect = 9e-42
 Identities = 93/206 (45%), Positives = 118/206 (57%), Gaps = 11/206 (5%)

Query: 4   NGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRG 63
           + S      A  +Q +  KMFIGGLSW T+   L+DYFSKFGE+ +C +  DP T RSRG
Sbjct: 80  SNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRG 139

Query: 64  FGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVV 123
           FGFV F +  SVDKV+ Q  H+L+ K IDPK    R    K     KKIFVGGLS +T  
Sbjct: 140 FGFVLFKESESVDKVMDQKEHKLNGKVIDPK----RAKAMKTKEPVKKIFVGGLSPDTPE 195

Query: 124 EDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECK 183
           E +++YF  FG+VE   L  D  TN+ RGF F+TF+ E+ V+K+ E  +H +     E K
Sbjct: 196 EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIK 255

Query: 184 KAQPKEVMFPP-------GTRGRARG 202
            A  KE            G  GRARG
Sbjct: 256 VAMSKEQYQQQQQWGSRGGFAGRARG 281


>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
           sapiens]
          Length = 378

 Score =  167 bits (422), Expect = 2e-41
 Identities = 121/342 (35%), Positives = 165/342 (48%), Gaps = 33/342 (9%)

Query: 18  HDPG------KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFAD 71
           HDP       K+FIGGLS++T+ DSLR++F K+G + +C+VMRDP TKRSRGFGFVT++ 
Sbjct: 26  HDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSC 85

Query: 72  PASVDKVLGQPHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQY 129
              VD  +    H++D + ++PK A  R    +P      KKIFVGG+  +T   +++ Y
Sbjct: 86  VEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDY 145

Query: 130 FEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKE 189
           FE++GK+E   +M D+ + + RGF FVTF++ D V+K+    +H IN    E KKA  K+
Sbjct: 146 FEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQ 205

Query: 190 VMFPPGT-RGRARGLPYTMDA---FMLGMGMLGY-PNFVAT--YGRGYPGFAPSY----- 237
            M   G+ RGR  G    M     F  G G  G   NF     YG G  G   SY     
Sbjct: 206 EMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDG 265

Query: 238 GYQFPGFPAAAYGPVAAAAVAAARG--------SGSNPARPGGFPGANSPGPV-ADLYGP 288
           GY   G     YG     +     G         G      GG+ G N  G      YG 
Sbjct: 266 GYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGG 325

Query: 289 ASQDSGVGNYI----SAASPQPGSGFGHGIAGPLIATAFTNG 326
               +  GNY     S   P  G  FG   +G      + +G
Sbjct: 326 GGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSG 367


>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
           [Homo sapiens]
          Length = 372

 Score =  166 bits (420), Expect = 3e-41
 Identities = 115/344 (33%), Positives = 167/344 (48%), Gaps = 43/344 (12%)

Query: 12  SANDSQHDPG---KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVT 68
           S ++S  +P    K+FIGGLS++T+ +SLR +F ++G + +C+VMRDP TKRSRGFGFVT
Sbjct: 2   SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61

Query: 69  FADPASVDKVLGQPHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDV 126
           +A    VD  +    H++D + ++PK A  R    +P      KKIFVGG+  +T    +
Sbjct: 62  YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121

Query: 127 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 186
           + YFEQ+GK+E   +M D+ + + RGF FVTF++ D V+K+    +H +N    E +KA 
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181

Query: 187 PKEVMFP----------PGTRGRARGLPY-TMDAFMLGMGMLGYPNFVAT--------YG 227
            K+ M             G  G  RG  +   D F  G    G   F  +         G
Sbjct: 182 SKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSG 241

Query: 228 RGYPGFA--PSYGYQFPGFPAAAYGPVAAAAVAAARGSG---------SNPARPGGFPGA 276
            GY GF     YG   PG+   + G  +       +GSG          N    GGF G 
Sbjct: 242 DGYNGFGNDGGYGGGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGG 301

Query: 277 NSPGPVADLYGPASQDSGVGNYISAAS---PQPGSGFGHGIAGP 317
           +        +G     +  GNY + +S   P  G  FG   +GP
Sbjct: 302 SGSN-----FGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGP 340


>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
           B1 [Homo sapiens]
          Length = 353

 Score =  165 bits (418), Expect = 4e-41
 Identities = 95/279 (34%), Positives = 148/279 (53%), Gaps = 7/279 (2%)

Query: 22  KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
           K+FIGGLS++T+ +SLR+Y+ ++G++ +C+VMRDP +KRSRGFGFVTF+  A VD  +  
Sbjct: 22  KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81

Query: 82  PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 139
             H +D + ++PK A  R    +P      KK+FVGG+  +T    ++ YFE++GK++  
Sbjct: 82  RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 141

Query: 140 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGR 199
            ++ D+ + + RGFGFVTF++ D V+K+    +H IN    E +KA  ++ M    +   
Sbjct: 142 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 201

Query: 200 ARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPGFPAAAYGPVAAAAVAA 259
            RG  +       G G  G P   + +  G  G+    G+   G+     GP       +
Sbjct: 202 GRGGNFGFGDSRGGGGNFG-PGPGSNFRGGSDGYGSGRGFG-DGYNGYGGGPGGGNFGGS 259

Query: 260 ARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNY 298
               G      GG PG  + G     YG    + G GNY
Sbjct: 260 PGYGGGRGGYGGGGPGYGNQG---GGYGGGYDNYGGGNY 295



 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 35/86 (40%), Positives = 53/86 (61%)

Query: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
           +K+F+GGLS  T  E ++ Y+EQ+GK+ D ++M D  + R RGFGFVTF +   V+    
Sbjct: 21  RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80

Query: 170 IHFHEINNKMVECKKAQPKEVMFPPG 195
              H I+ ++VE K+A  +E    PG
Sbjct: 81  ARPHSIDGRVVEPKRAVAREESGKPG 106


>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
           [Homo sapiens]
          Length = 341

 Score =  165 bits (418), Expect = 4e-41
 Identities = 95/279 (34%), Positives = 148/279 (53%), Gaps = 7/279 (2%)

Query: 22  KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
           K+FIGGLS++T+ +SLR+Y+ ++G++ +C+VMRDP +KRSRGFGFVTF+  A VD  +  
Sbjct: 10  KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69

Query: 82  PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 139
             H +D + ++PK A  R    +P      KK+FVGG+  +T    ++ YFE++GK++  
Sbjct: 70  RPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTI 129

Query: 140 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPGTRGR 199
            ++ D+ + + RGFGFVTF++ D V+K+    +H IN    E +KA  ++ M    +   
Sbjct: 130 EIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRS 189

Query: 200 ARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPSYGYQFPGFPAAAYGPVAAAAVAA 259
            RG  +       G G  G P   + +  G  G+    G+   G+     GP       +
Sbjct: 190 GRGGNFGFGDSRGGGGNFG-PGPGSNFRGGSDGYGSGRGFG-DGYNGYGGGPGGGNFGGS 247

Query: 260 ARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNY 298
               G      GG PG  + G     YG    + G GNY
Sbjct: 248 PGYGGGRGGYGGGGPGYGNQG---GGYGGGYDNYGGGNY 283



 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 35/86 (40%), Positives = 53/86 (61%)

Query: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
           +K+F+GGLS  T  E ++ Y+EQ+GK+ D ++M D  + R RGFGFVTF +   V+    
Sbjct: 9   RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 68

Query: 170 IHFHEINNKMVECKKAQPKEVMFPPG 195
              H I+ ++VE K+A  +E    PG
Sbjct: 69  ARPHSIDGRVVEPKRAVAREESGKPG 94


>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
           [Homo sapiens]
          Length = 320

 Score =  163 bits (412), Expect = 2e-40
 Identities = 105/315 (33%), Positives = 155/315 (49%), Gaps = 37/315 (11%)

Query: 12  SANDSQHDPG---KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVT 68
           S ++S  +P    K+FIGGLS++T+ +SLR +F ++G + +C+VMRDP TKRSRGFGFVT
Sbjct: 2   SKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61

Query: 69  FADPASVDKVLGQPHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDV 126
           +A    VD  +    H++D + ++PK A  R    +P      KKIFVGG+  +T    +
Sbjct: 62  YATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121

Query: 127 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 186
           + YFEQ+GK+E   +M D+ + + RGF FVTF++ D V+K+    +H +N    E +KA 
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181

Query: 187 PKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAP-SYGYQFPGFP 245
            K+ M    +  R R                G  NF    G G+ G      G  F G  
Sbjct: 182 SKQEMASASSSQRGRS---------------GSGNFGGGRGGGFGGNDNFGRGGNFSG-- 224

Query: 246 AAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNYISAAS-- 303
                         +RG G       G+ G  + G     +G     +  GNY + +S  
Sbjct: 225 --------RGGFGGSRGGGGYGGSGDGYNGFGNDG---SNFGGGGSYNDFGNYNNQSSNF 273

Query: 304 -PQPGSGFGHGIAGP 317
            P  G  FG   +GP
Sbjct: 274 GPMKGGNFGGRSSGP 288


>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
           sapiens]
          Length = 320

 Score =  160 bits (406), Expect = 1e-39
 Identities = 109/305 (35%), Positives = 152/305 (49%), Gaps = 28/305 (9%)

Query: 22  KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
           K+FIGGLS++T+ +SLR +F ++G + +C+VMRDP TKRSRGFGFVT+A    VD  +  
Sbjct: 15  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74

Query: 82  PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 139
             H++D + ++PK A  R    +P      KKIFVGG+  +T    ++ YFEQ+GK+E  
Sbjct: 75  TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134

Query: 140 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFP------ 193
            +M D+ + + RGF FVTF++ D V+K+    +H +     E +KA PK+ M        
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQR 194

Query: 194 ----PGTRGRARGLPY-TMDAFMLGMGMLGYPNFVATY-GRGYPGFAPSY-GYQFPGFPA 246
                G  G  RG  +   D F  G    G   F  +  G GY G    Y G+   G   
Sbjct: 195 GRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNF 254

Query: 247 AAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNYISAASPQP 306
              G          + S   P + G F G  S GP    YG      G G Y   A PQ 
Sbjct: 255 GGGGSYNDFGNYNNQSSNFGPMKGGNF-GGRSSGP----YG------GGGQYF--AKPQN 301

Query: 307 GSGFG 311
             G+G
Sbjct: 302 QGGYG 306



 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 36/97 (37%), Positives = 58/97 (59%)

Query: 99  RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF 158
           + A PK   + +K+F+GGLS  T  E ++ +FEQ+G + D ++M D  T R RGFGFVT+
Sbjct: 3   KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62

Query: 159 ENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPG 195
              + V+       H+++ ++VE K+A  +E    PG
Sbjct: 63  ATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPG 99


>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
           sapiens]
          Length = 320

 Score =  160 bits (406), Expect = 1e-39
 Identities = 109/305 (35%), Positives = 152/305 (49%), Gaps = 28/305 (9%)

Query: 22  KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
           K+FIGGLS++T+ +SLR +F ++G + +C+VMRDP TKRSRGFGFVT+A    VD  +  
Sbjct: 15  KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74

Query: 82  PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 139
             H++D + ++PK A  R    +P      KKIFVGG+  +T    ++ YFEQ+GK+E  
Sbjct: 75  TPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134

Query: 140 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFP------ 193
            +M D+ + + RGF FVTF++ D V+K+    +H +     E +KA PK+ M        
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQR 194

Query: 194 ----PGTRGRARGLPY-TMDAFMLGMGMLGYPNFVATY-GRGYPGFAPSY-GYQFPGFPA 246
                G  G  RG  +   D F  G    G   F  +  G GY G    Y G+   G   
Sbjct: 195 GRRGSGNFGGGRGDGFGGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNF 254

Query: 247 AAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNYISAASPQP 306
              G          + S   P + G F G  S GP    YG      G G Y   A PQ 
Sbjct: 255 GGGGSYNDFGNYNNQSSNFGPMKGGNF-GGRSSGP----YG------GGGQYF--AKPQN 301

Query: 307 GSGFG 311
             G+G
Sbjct: 302 QGGYG 306



 Score = 74.7 bits (182), Expect = 1e-13
 Identities = 36/97 (37%), Positives = 58/97 (59%)

Query: 99  RRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF 158
           + A PK   + +K+F+GGLS  T  E ++ +FEQ+G + D ++M D  T R RGFGFVT+
Sbjct: 3   KSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62

Query: 159 ENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPPG 195
              + V+       H+++ ++VE K+A  +E    PG
Sbjct: 63  ATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPG 99


>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
           sapiens]
          Length = 305

 Score =  155 bits (391), Expect = 6e-38
 Identities = 103/296 (34%), Positives = 144/296 (48%), Gaps = 39/296 (13%)

Query: 22  KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
           K+FIGGL+ QTS   LR +F  FG + +C+V+ +P TKRSR FGFVT+++    D  +  
Sbjct: 8   KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67

Query: 82  PHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDA 139
             H +D  T++ K A  R   A+P    + KK+FVGGL  +    D+ ++F QFG VE A
Sbjct: 68  SPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKA 127

Query: 140 MLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFP------ 193
            ++ DK + + RGFGFV F+N D  +K   + FH I    VE KKA PKE ++       
Sbjct: 128 EIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIYSGGGGGG 187

Query: 194 -----PGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGF-------------AP 235
                 G  GR RG     +    G G  GY ++    G G  G+               
Sbjct: 188 SRSSRGGRGGRGRGGGRDQNGLSKGGGG-GYNSYGGYGGGGGGGYNAYGGGGGGSSYGGS 246

Query: 236 SYGYQFPGFPA-----AAYGPVAAAAVAAARG------SGSNPARPGGFPGANSPG 280
            YG  F GF +     ++YGP+ +       G      S S P R GG+ G    G
Sbjct: 247 DYGNGFGGFGSYSQHQSSYGPMKSGGGGGGGGSSWGGRSNSGPYR-GGYGGGGGYG 301


>gi|89035135 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein A1-like [Homo sapiens]
          Length = 321

 Score =  145 bits (366), Expect = 5e-35
 Identities = 106/319 (33%), Positives = 153/319 (47%), Gaps = 38/319 (11%)

Query: 12  SANDSQHDPG---KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVT 68
           S ++S  +P    K+FIGGL ++TS +SLR +  ++G + EC+VMRDP T RSRGFGFV 
Sbjct: 2   SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61

Query: 69  FADPASVDKVLGQPHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDV 126
           +     VD  +    H++  + ++PK A  R    +P      KKIFVGG+  +T    +
Sbjct: 62  YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPL 121

Query: 127 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 186
           + Y+EQ+GK E   +M D+ + + R F FVTF+N D  +K+    +H +N    E +KA 
Sbjct: 122 RDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKAL 181

Query: 187 PKEVMFP----------PGTRGRARGLPYT-MDAFMLGMGMLGYPNFVATYG---RGYPG 232
            K+ M             G  G  RG  ++  D F  G    G   F  ++G    GY G
Sbjct: 182 SKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYNG 241

Query: 233 FAPSYGYQFPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQD 292
           F  + G  F G   ++Y           + S   P + G F G  S      LYG     
Sbjct: 242 FG-NDGKNFGG--GSSYNDFGN---CNNQSSNFGPMKGGNFGGKRS-----CLYG----- 285

Query: 293 SGVGNYISAASPQPGSGFG 311
            G G Y   A PQ   G+G
Sbjct: 286 -GGGQYF--AKPQNQGGYG 301


>gi|89034333 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein A1-like [Homo sapiens]
          Length = 321

 Score =  145 bits (366), Expect = 5e-35
 Identities = 106/319 (33%), Positives = 153/319 (47%), Gaps = 38/319 (11%)

Query: 12  SANDSQHDPG---KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVT 68
           S ++S  +P    K+FIGGL ++TS +SLR +  ++G + EC+VMRDP T RSRGFGFV 
Sbjct: 2   SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61

Query: 69  FADPASVDKVLGQPHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDV 126
           +     VD  +    H++  + ++PK A  R    +P      KKIFVGG+  +T    +
Sbjct: 62  YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPL 121

Query: 127 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 186
           + Y+EQ+GK E   +M D+ + + R F FVTF+N D  +K+    +H +N    E +KA 
Sbjct: 122 RDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKAL 181

Query: 187 PKEVMFP----------PGTRGRARGLPYT-MDAFMLGMGMLGYPNFVATYG---RGYPG 232
            K+ M             G  G  RG  ++  D F  G    G   F  ++G    GY G
Sbjct: 182 SKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGFGGSHGGSADGYNG 241

Query: 233 FAPSYGYQFPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQD 292
           F  + G  F G   ++Y           + S   P + G F G  S      LYG     
Sbjct: 242 FG-NDGKNFGG--GSSYNDFGN---CNNQSSNFGPMKGGNFGGKRS-----CLYG----- 285

Query: 293 SGVGNYISAASPQPGSGFG 311
            G G Y   A PQ   G+G
Sbjct: 286 -GGGQYF--AKPQNQGGYG 301


>gi|169203146 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein A1-like [Homo sapiens]
          Length = 321

 Score =  143 bits (360), Expect = 2e-34
 Identities = 105/319 (32%), Positives = 152/319 (47%), Gaps = 38/319 (11%)

Query: 12  SANDSQHDPG---KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVT 68
           S ++S  +P    K+FIGGL ++TS +SLR +  ++G + EC+VMRDP T RSRGFGFV 
Sbjct: 2   SKSESPKEPKQLRKLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVP 61

Query: 69  FADPASVDKVLGQPHHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSANTVVEDV 126
           +     VD  +    H++  + ++PK A  R    +P      KKIFVGG+  +T    +
Sbjct: 62  YVTVEEVDAAMNARPHKMGGRVVEPKTAVSREDSQRPGAYLTVKKIFVGGIKEDTEEHPL 121

Query: 127 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 186
           + Y+EQ+GK E   +M D+ + + R F FVTF+N D  +K+    +H +N    E +KA 
Sbjct: 122 RDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTFDNHDSTDKIVIQKYHIVNGHNCEVRKAL 181

Query: 187 PKEVMFP----------PGTRGRARGLPYT-MDAFMLGMGMLGYPNFVATYG---RGYPG 232
            K+ M             G  G  RG  ++  D F  G    G      ++G    GY G
Sbjct: 182 SKQKMASAPSSQRSRSGSGNFGGGRGGGFSGNDNFGHGGNFSGCGGLGGSHGGSADGYNG 241

Query: 233 FAPSYGYQFPGFPAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADLYGPASQD 292
           F  + G  F G   ++Y           + S   P + G F G  S      LYG     
Sbjct: 242 FG-NDGKNFGG--GSSYNDFGN---CNNQSSNFGPMKGGNFGGKRS-----CLYG----- 285

Query: 293 SGVGNYISAASPQPGSGFG 311
            G G Y   A PQ   G+G
Sbjct: 286 -GGGQYF--AKPQNQGGYG 301


>gi|6678271 TAR DNA binding protein [Homo sapiens]
          Length = 414

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 46/146 (31%), Positives = 84/146 (57%), Gaps = 7/146 (4%)

Query: 23  MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 82
           + + GL W+T+   L++YFS FGE+    V +D  T  S+GFGFV F +  +  KV+ Q 
Sbjct: 106 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ- 164

Query: 83  HHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLM 142
            H +D +  D K+   +++Q + + R++K+FVG  + +   ++++++F Q+G V D  + 
Sbjct: 165 RHMIDGRWCDCKLPNSKQSQDEPL-RSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI- 222

Query: 143 FDKTTNRHRGFGFVTFENEDVVEKVC 168
                   R F FVTF ++ + + +C
Sbjct: 223 ----PKPFRAFAFVTFADDQIAQSLC 244



 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 1/91 (1%)

Query: 104 KMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDV 163
           + V +T  + V GL   T  +D+K+YF  FG+V    +  D  T   +GFGFV F   + 
Sbjct: 98  RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYET 157

Query: 164 VEKVCEIHFHEINNKMVECKKAQPKEVMFPP 194
             KV     H I+ +  +CK    K+    P
Sbjct: 158 QVKVMS-QRHMIDGRWCDCKLPNSKQSQDEP 187



 Score = 41.6 bits (96), Expect = 0.001
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 8/73 (10%)

Query: 12  SANDSQHDP---GKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVT 68
           ++  SQ +P    K+F+G  +   + D LR++FS++G++ +  +      K  R F FVT
Sbjct: 179 NSKQSQDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFI-----PKPFRAFAFVT 233

Query: 69  FADPASVDKVLGQ 81
           FAD      + G+
Sbjct: 234 FADDQIAQSLCGE 246


>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
          Length = 367

 Score = 82.8 bits (203), Expect = 4e-16
 Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 8   GTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFV 67
           GT+G+ +DS+ +   + +  L    + D  +  F   G+I  C ++RD  T +S G+GFV
Sbjct: 29  GTNGATDDSKTN---LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFV 85

Query: 68  TFADPASVDKVLGQPHH-ELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDV 126
            ++DP   DK +   +  +L +KTI    A P  A      R   ++V GL      +++
Sbjct: 86  NYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS----IRDANLYVSGLPKTMSQKEM 141

Query: 127 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
           +Q F Q+G++  + ++ D+ T   RG GF+ F+     E+
Sbjct: 142 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 181



 Score = 39.3 bits (90), Expect = 0.005
 Identities = 22/51 (43%), Positives = 28/51 (54%)

Query: 112 IFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 162
           IFV  LS       + Q F  FG V +  ++ D TTN+ +GFGFVT  N D
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYD 336



 Score = 37.4 bits (85), Expect = 0.018
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 23  MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFAD 71
           +F+  LS +     L   F  FG +    V+RD TT + +GFGFVT  +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTN 334


>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
          Length = 360

 Score = 82.8 bits (203), Expect = 4e-16
 Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 8   GTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFV 67
           GT+G+ +DS+ +   + +  L    + D  +  F   G+I  C ++RD  T +S G+GFV
Sbjct: 29  GTNGATDDSKTN---LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFV 85

Query: 68  TFADPASVDKVLGQPHH-ELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDV 126
            ++DP   DK +   +  +L +KTI    A P  A      R   ++V GL      +++
Sbjct: 86  NYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSAS----IRDANLYVSGLPKTMSQKEM 141

Query: 127 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
           +Q F Q+G++  + ++ D+ T   RG GF+ F+     E+
Sbjct: 142 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 181



 Score = 39.3 bits (90), Expect = 0.005
 Identities = 22/51 (43%), Positives = 28/51 (54%)

Query: 112 IFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 162
           IFV  LS       + Q F  FG V +  ++ D TTN+ +GFGFVT  N D
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYD 329



 Score = 37.4 bits (85), Expect = 0.018
 Identities = 18/49 (36%), Positives = 26/49 (53%)

Query: 23  MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFAD 71
           +F+  LS +     L   F  FG +    V+RD TT + +GFGFVT  +
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTN 327


>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
          Length = 524

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 8/161 (4%)

Query: 17  QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASV- 75
           + D   +F   L+ +  P  L ++FS  G++R+  ++ D  ++RS+G  +V F D +SV 
Sbjct: 149 ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVP 208

Query: 76  -------DKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQ 128
                   +VLG P     S+    + A       K      +++VG L  N   + ++ 
Sbjct: 209 LAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRG 268

Query: 129 YFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
            FE FG++E   LM D  T R +G+GF+TF + +  +K  E
Sbjct: 269 IFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309



 Score = 55.5 bits (132), Expect = 7e-08
 Identities = 26/80 (32%), Positives = 40/80 (50%)

Query: 2   EANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRS 61
           E N +   + +       P ++++G L +  + D LR  F  FG I    +M D  T RS
Sbjct: 231 EKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRS 290

Query: 62  RGFGFVTFADPASVDKVLGQ 81
           +G+GF+TF+D     K L Q
Sbjct: 291 KGYGFITFSDSECAKKALEQ 310


>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
          Length = 530

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 8/161 (4%)

Query: 17  QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASV- 75
           + D   +F   L+ +  P  L ++FS  G++R+  ++ D  ++RS+G  +V F D +SV 
Sbjct: 149 ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVP 208

Query: 76  -------DKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQ 128
                   +VLG P     S+    + A       K      +++VG L  N   + ++ 
Sbjct: 209 LAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRG 268

Query: 129 YFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCE 169
            FE FG++E   LM D  T R +G+GF+TF + +  +K  E
Sbjct: 269 IFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309



 Score = 55.5 bits (132), Expect = 7e-08
 Identities = 26/80 (32%), Positives = 40/80 (50%)

Query: 2   EANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRS 61
           E N +   + +       P ++++G L +  + D LR  F  FG I    +M D  T RS
Sbjct: 231 EKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRS 290

Query: 62  RGFGFVTFADPASVDKVLGQ 81
           +G+GF+TF+D     K L Q
Sbjct: 291 KGYGFITFSDSECAKKALEQ 310


>gi|115511032 ELAV (embryonic lethal, abnormal vision,
           Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
          Length = 359

 Score = 79.0 bits (193), Expect = 6e-15
 Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 8/158 (5%)

Query: 10  SGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 69
           SG+  DS+ +   + +  L    + + L+  F   GEI  C ++RD  T +S G+GFV +
Sbjct: 31  SGNTEDSKTN---LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87

Query: 70  ADPASVDKVLGQPHH-ELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQ 128
            DP   +K +   +   L +KTI    A P  A      R   ++V GL      ++++Q
Sbjct: 88  IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS----IRDANLYVSGLPKTMTQKELEQ 143

Query: 129 YFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
            F Q+G++  + ++ D+ T   RG GF+ F+     E+
Sbjct: 144 LFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEE 181



 Score = 36.6 bits (83), Expect = 0.031
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query: 112 IFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 162
           IFV  L+ +     + Q F  FG V +  ++ D  TN+ +GFGFVT  N D
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 328



 Score = 33.5 bits (75), Expect = 0.27
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 23  MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFAD 71
           +F+  L+       L   F  FG +    V+RD  T + +GFGFVT  +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTN 326


>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
          Length = 380

 Score = 77.0 bits (188), Expect = 2e-14
 Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 9   TSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVT 68
           T  + +DS+ +   + +  L    + +  R  F   GEI  C ++RD  T +S G+GFV 
Sbjct: 37  TGATTDDSKTN---LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVN 93

Query: 69  FADPASVDKVLGQPHH-ELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVK 127
           + DP   +K +   +   L +KTI    A P  A      R   ++V GL      ++++
Sbjct: 94  YIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS----IRDANLYVSGLPKTMTQKELE 149

Query: 128 QYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
           Q F Q+G++  + ++ D+ T   RG GF+ F+     E+
Sbjct: 150 QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 188



 Score = 38.5 bits (88), Expect = 0.008
 Identities = 21/51 (41%), Positives = 29/51 (56%)

Query: 112 IFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 162
           IFV  LS ++    + Q F  FG V +  ++ D  TN+ +GFGFVT  N D
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYD 349



 Score = 35.4 bits (80), Expect = 0.070
 Identities = 17/49 (34%), Positives = 25/49 (51%)

Query: 23  MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFAD 71
           +F+  LS  +    L   F  FG +    V+RD  T + +GFGFVT  +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTN 347


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,206,922
Number of Sequences: 37866
Number of extensions: 856443
Number of successful extensions: 5445
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 326
Number of HSP's that attempted gapping in prelim test: 3706
Number of HSP's gapped (non-prelim): 1533
length of query: 328
length of database: 18,247,518
effective HSP length: 103
effective length of query: 225
effective length of database: 14,347,320
effective search space: 3228147000
effective search space used: 3228147000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.