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Search of human proteins with 20336315
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|20336315 BCL2-like 11 isoform 1 [Homo sapiens]
(198 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|20336315 BCL2-like 11 isoform 1 [Homo sapiens] 414 e-116
gi|5729740 BCL2-like 11 isoform 6 [Homo sapiens] 226 1e-59
gi|46276880 BCL2-like 11 isoform 9 [Homo sapiens] 111 4e-25
gi|61699226 pulmonary surfactant-associated protein D precursor ... 40 0.002
gi|163965366 nascent polypeptide-associated complex alpha subuni... 40 0.002
gi|162329608 phosphodiesterase 4A isoform 1 [Homo sapiens] 39 0.004
gi|239752986 PREDICTED: hypothetical protein XP_002345321 [Homo ... 37 0.011
gi|239741430 PREDICTED: hypothetical protein XP_002342198 [Homo ... 37 0.011
gi|56711322 ring finger protein 43 [Homo sapiens] 37 0.014
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 36 0.019
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 36 0.019
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 36 0.019
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 36 0.019
gi|169168458 PREDICTED: hypothetical protein [Homo sapiens] 36 0.024
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 36 0.024
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 35 0.032
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 35 0.032
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 35 0.032
gi|7705753 complement component 1, q subcomponent, A chain precu... 35 0.032
gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens] 35 0.032
gi|109240536 DC-STAMP domain containing 2 [Homo sapiens] 35 0.032
gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens] 35 0.032
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 35 0.032
gi|4502827 cholinergic receptor, nicotinic, alpha 4 subunit prec... 35 0.054
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 35 0.054
gi|158534055 round spermatid basic protein 1-like [Homo sapiens] 35 0.054
gi|21361320 TRK-fused [Homo sapiens] 35 0.054
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 35 0.054
gi|56090139 TRK-fused [Homo sapiens] 35 0.054
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 34 0.071
>gi|20336315 BCL2-like 11 isoform 1 [Homo sapiens]
Length = 198
Score = 414 bits (1065), Expect = e-116
Identities = 198/198 (100%), Positives = 198/198 (100%)
Query: 1 MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSP 60
MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSP
Sbjct: 1 MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSP 60
Query: 61 QGPLAPPASPGPFATRSPLFIFMRRSSLLSRSSSGYFSFDTDRSPAPMSCDKSTQTPSPP 120
QGPLAPPASPGPFATRSPLFIFMRRSSLLSRSSSGYFSFDTDRSPAPMSCDKSTQTPSPP
Sbjct: 61 QGPLAPPASPGPFATRSPLFIFMRRSSLLSRSSSGYFSFDTDRSPAPMSCDKSTQTPSPP 120
Query: 121 CQAFNHYLSAMASMRQAEPADMRPEIWIAQELRRIGDEFNAYYARRVFLNNYQAAEDHPR 180
CQAFNHYLSAMASMRQAEPADMRPEIWIAQELRRIGDEFNAYYARRVFLNNYQAAEDHPR
Sbjct: 121 CQAFNHYLSAMASMRQAEPADMRPEIWIAQELRRIGDEFNAYYARRVFLNNYQAAEDHPR 180
Query: 181 MVILRLLRYIVRLVWRMH 198
MVILRLLRYIVRLVWRMH
Sbjct: 181 MVILRLLRYIVRLVWRMH 198
>gi|5729740 BCL2-like 11 isoform 6 [Homo sapiens]
Length = 138
Score = 226 bits (575), Expect = 1e-59
Identities = 128/198 (64%), Positives = 129/198 (65%), Gaps = 60/198 (30%)
Query: 1 MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSP 60
MAKQPSDVSSECDREGRQLQPAE RP PQ P G+P
Sbjct: 1 MAKQPSDVSSECDREGRQLQPAE-----RP---------PQLRP-------------GAP 33
Query: 61 QGPLAPPASPGPFATRSPLFIFMRRSSLLSRSSSGYFSFDTDRSPAPMSCDKSTQTPSPP 120
P DRSPAPMSCDKSTQTPSPP
Sbjct: 34 TSLQTEPQ---------------------------------DRSPAPMSCDKSTQTPSPP 60
Query: 121 CQAFNHYLSAMASMRQAEPADMRPEIWIAQELRRIGDEFNAYYARRVFLNNYQAAEDHPR 180
CQAFNHYLSAMASMRQAEPADMRPEIWIAQELRRIGDEFNAYYARRVFLNNYQAAEDHPR
Sbjct: 61 CQAFNHYLSAMASMRQAEPADMRPEIWIAQELRRIGDEFNAYYARRVFLNNYQAAEDHPR 120
Query: 181 MVILRLLRYIVRLVWRMH 198
MVILRLLRYIVRLVWRMH
Sbjct: 121 MVILRLLRYIVRLVWRMH 138
>gi|46276880 BCL2-like 11 isoform 9 [Homo sapiens]
Length = 112
Score = 111 bits (278), Expect = 4e-25
Identities = 66/131 (50%), Positives = 67/131 (51%), Gaps = 60/131 (45%)
Query: 1 MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSP 60
MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQ
Sbjct: 1 MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQDR----------------- 43
Query: 61 QGPLAPPASPGPFATRSPLFIFMRRSSLLSRSSSGYFSFDTDRSPAPMSCDKSTQTPSPP 120
SP P + CDKSTQTPSPP
Sbjct: 44 --------SPAPMS-----------------------------------CDKSTQTPSPP 60
Query: 121 CQAFNHYLSAM 131
CQAFNHYLSAM
Sbjct: 61 CQAFNHYLSAM 71
>gi|61699226 pulmonary surfactant-associated protein D precursor
[Homo sapiens]
Length = 375
Score = 39.7 bits (91), Expect = 0.002
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 14 REGRQLQPAERPPQLRPGAPTSL-------QTEPQGNPEGNHGGEGDSCPHGS--PQGPL 64
R+GR + R + PG P + Q P G P+G++G G+ P G P GP
Sbjct: 50 RDGRDGREGPRGEKGDPGLPGAAGQAGMPGQAGPVG-PKGDNGSVGEPGPKGDTGPSGPP 108
Query: 65 APPASPGPFATRSPL 79
PP PGP PL
Sbjct: 109 GPPGVPGPAGREGPL 123
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 39.7 bits (91), Expect = 0.002
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 15 EGRQLQPAERPPQLRPG----APTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASP 70
+G PA PP + G +P T P P GG P G+P P A P SP
Sbjct: 1169 KGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSP 1228
Query: 71 -GPFATRSP 78
G AT SP
Sbjct: 1229 KGGLATPSP 1237
Score = 38.9 bits (89), Expect = 0.003
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 15 EGRQLQPAERPPQLRPGA----PTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASP 70
+G PA PP + G P T P P GG P G+P P A P SP
Sbjct: 1146 KGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSP 1205
Query: 71 -GPFATRSP 78
G AT SP
Sbjct: 1206 KGGLATPSP 1214
Score = 38.1 bits (87), Expect = 0.005
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 15 EGRQLQPAERPPQLRPGA----PTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASP 70
+G PA PP + G P T P P GG P G+P P A P SP
Sbjct: 1123 KGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSP 1182
Query: 71 -GPFATRSP 78
G AT SP
Sbjct: 1183 KGGLATPSP 1191
Score = 36.2 bits (82), Expect = 0.019
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 15 EGRQLQPAERPPQLRPG----APTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASP 70
+G PA PP + G +P T P P GG P G+P P A P SP
Sbjct: 1192 KGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSP 1251
Query: 71 -GPFATRSP 78
G AT P
Sbjct: 1252 KGGPATPPP 1260
Score = 35.4 bits (80), Expect = 0.032
Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 21 PAERPPQLRPG----APTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASP--GPFA 74
PA PP + G +P T P P GG P G+P P P SP P A
Sbjct: 966 PAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAA 1025
Query: 75 TRSP 78
T P
Sbjct: 1026 TPFP 1029
Score = 34.7 bits (78), Expect = 0.054
Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Query: 5 PSDVSSECDREGRQLQPAERPPQLRPG----APTSLQTEPQGNPEGNHGGEGDSCPHGSP 60
P + + +G PA PP + G +P T P P GG P G+P
Sbjct: 927 PKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAP 986
Query: 61 QGPLAPP-------ASPGPFATRSP 78
P A P A+P P +P
Sbjct: 987 TPPAATPPSPKGGPATPSPKGAPTP 1011
Score = 34.7 bits (78), Expect = 0.054
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 15 EGRQLQPAERPPQLRPG----APTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLA-PPAS 69
+G PA PP + G +P T P P GG P G+P P A PP+
Sbjct: 1215 KGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSL 1274
Query: 70 PGPFAT 75
G AT
Sbjct: 1275 KGGLAT 1280
Score = 32.3 bits (72), Expect = 0.27
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 15 EGRQLQPAERPPQLRPGAPTSLQTEPQG----NPEGNHGGEGDSCPHGSPQGPLAPPASP 70
+G PA PP L+ G T P GG S P G+P P A P SP
Sbjct: 1261 KGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSP 1320
Score = 32.3 bits (72), Expect = 0.27
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 21 PAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASP 70
PA PP+ P P + P+G+P G P G+P P P SP
Sbjct: 1301 PATSPPKGAPTPPAATPPSPKGSP-------GTPPPKGAPTPPAVTPPSP 1343
Score = 32.0 bits (71), Expect = 0.35
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 15 EGRQLQPAERPPQLRPGAPT----SLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASP 70
+G PA P + G T T P P GG P G+P P A P SP
Sbjct: 1054 KGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSP 1113
Query: 71 -GPFAT 75
G AT
Sbjct: 1114 KGGLAT 1119
Score = 31.2 bits (69), Expect = 0.60
Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 15 EGRQLQPAERPPQLRPG----APTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASP 70
+G PA PP + G +P P P GG G+P P A P SP
Sbjct: 1077 KGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSP 1136
Query: 71 -GPFATRSP 78
G AT P
Sbjct: 1137 KGGLATPPP 1145
Score = 30.0 bits (66), Expect = 1.3
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 25 PPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPGPFATRSPLFIFMR 84
PP + +P T P P G P G+P P P+S T SP + +
Sbjct: 1602 PPAVTSPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSPPVTPSSLKDSPT-SPASVTCK 1660
Query: 85 RSSLLSRSSSG 95
+ + ++S G
Sbjct: 1661 MGATVPQASKG 1671
Score = 29.3 bits (64), Expect = 2.3
Identities = 24/70 (34%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 15 EGRQLQPAERPPQLR--PGA---PTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPAS 69
+G PA PP + P A P T P GG G+P P A P S
Sbjct: 1030 KGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPS 1089
Query: 70 P-GPFATRSP 78
P G AT SP
Sbjct: 1090 PKGGPATPSP 1099
Score = 28.5 bits (62), Expect = 3.9
Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 15/96 (15%)
Query: 28 LRPGAPTSLQTE---PQGNPEGNHGGEGDSCPHGSPQGPLAPPASPGPFATRSPLFIFMR 84
L P P S+ + P G P G +G S H S P+A +SP T
Sbjct: 726 LAPEIPKSVPSPSLPPAGTPPGTKKVDGIS--HTSALAPVA--SSPKECPTEDS------ 775
Query: 85 RSSLLSRSSSGYFSFDTDRSPAPMSCDKSTQTPSPP 120
+ + SS G ++ D SP+P+ S QT PP
Sbjct: 776 -GASATASSKGTLTYLAD-SPSPLGVSVSPQTKRPP 809
Score = 28.1 bits (61), Expect = 5.1
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 51 EGDSCPHGSPQGPLAPPASPGPFATRSPLF---IFMRRSSLLSRSSSGYFSFDTDRSPAP 107
+G H SP+GPLAPP S + F + S+ +S + S S SP P
Sbjct: 1750 KGKDASH-SPKGPLAPPESKASTPLTAAAFEKVLPKPESASVSAAPSPPVSLPLAPSPVP 1808
Query: 108 MSCDKSTQTPSPP 120
K PS P
Sbjct: 1809 TLPPKQQFLPSSP 1821
Score = 27.7 bits (60), Expect = 6.7
Identities = 19/68 (27%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 15 EGRQLQPAERPPQLRPGA----PTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASP 70
+G PA PP + G P T P P GG G+P + P SP
Sbjct: 1238 KGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSP 1297
Query: 71 GPFATRSP 78
SP
Sbjct: 1298 KGGPATSP 1305
>gi|162329608 phosphodiesterase 4A isoform 1 [Homo sapiens]
Length = 886
Score = 38.5 bits (88), Expect = 0.004
Identities = 40/124 (32%), Positives = 52/124 (41%), Gaps = 22/124 (17%)
Query: 6 SDVSSECDREGRQLQPAERPPQL----RPGAPTSLQTEPQ-----GNPEGNHGG------ 50
SD + +RE + +P ER + RPG T+ + P G G GG
Sbjct: 49 SDSAERAERERQPHRPIERADAMDTSDRPGLRTTRMSWPSSFHGTGTGSGGAGGGSSRRF 108
Query: 51 EGDSCPHGSP-QGPLAPPASPGPFATRSPLFIFMRRSSLLSRSSSGYFSFDTDRSPAPMS 109
E ++ P SP + PL ASPG + RR S L RS S Y D SP MS
Sbjct: 109 EAENGPTPSPGRSPLDSQASPG-LVLHAGAATSQRRESFLYRSDSDY-----DMSPKTMS 162
Query: 110 CDKS 113
+ S
Sbjct: 163 RNSS 166
>gi|239752986 PREDICTED: hypothetical protein XP_002345321 [Homo
sapiens]
Length = 424
Score = 37.0 bits (84), Expect = 0.011
Identities = 36/109 (33%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 18 QLQPAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAP--PASPGPFAT 75
+L+ E P P +P + + +G+ E G D+C +PQ P P PA GP
Sbjct: 82 ELRVDEDVPDELPQSPQLVHSLTKGHAEARENGRRDTC--NNPQCPRKPLSPAQGGPTCP 139
Query: 76 RSP---LFIFMRRS--SLLSRSSSGYFSFDTDRSPAPMSCDKSTQTPSP 119
RS LF+ R+S SLLS F F SP S S T P
Sbjct: 140 RSSPCLLFLPSRQSQYSLLSFRGRPRFRFPCLGSPFLQSRKPSVGTSLP 188
>gi|239741430 PREDICTED: hypothetical protein XP_002342198 [Homo
sapiens]
Length = 424
Score = 37.0 bits (84), Expect = 0.011
Identities = 36/109 (33%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 18 QLQPAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAP--PASPGPFAT 75
+L+ E P P +P + + +G+ E G D+C +PQ P P PA GP
Sbjct: 82 ELRVDEDVPDELPQSPQLVHSLTKGHAEARENGRRDTC--NNPQCPRKPLSPAQGGPTCP 139
Query: 76 RSP---LFIFMRRS--SLLSRSSSGYFSFDTDRSPAPMSCDKSTQTPSP 119
RS LF+ R+S SLLS F F SP S S T P
Sbjct: 140 RSSPCLLFLPSRQSQYSLLSFRGRPRFRFPCLGSPFLQSRKPSVGTSLP 188
>gi|56711322 ring finger protein 43 [Homo sapiens]
Length = 783
Score = 36.6 bits (83), Expect = 0.014
Identities = 41/129 (31%), Positives = 52/129 (40%), Gaps = 17/129 (13%)
Query: 16 GRQLQPAERPPQLRPGAP-TSLQTEPQGNPEGNHGGEGDSCPHG---SPQGPLA-PPASP 70
GR+ P PQ RP P T Q EP +P+ + P G +PQ P A P +P
Sbjct: 566 GRKPGPETGVPQSRPPIPRTQPQPEPP-SPDQQVTRSNSAAPSGRLSNPQCPRALPEPAP 624
Query: 71 GPFATRSPLFIFMRRSSLLSRSSSGYFSFDTDR-------SPAPMSCDKSTQTPSPPCQA 123
GP S I SSL + S + R P P S + T P CQ
Sbjct: 625 GPVDASS---ICPSTSSLFNLQKSSLSARHPQRKRRGGPSEPTPGSRPQDA-TVHPACQI 680
Query: 124 FNHYLSAMA 132
F HY ++A
Sbjct: 681 FPHYTPSVA 689
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 36.2 bits (82), Expect = 0.019
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 16 GRQLQPAERPPQLRPGAPTSLQTEPQGNPE--GNHGGEGDSCPHGSPQGPLAPPASPGP 72
G + Q A PP G P PQG P G + + + P G PQGP PP P
Sbjct: 268 GSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRP 326
Score = 30.4 bits (67), Expect = 1.0
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 20 QPAERPPQL-RPGAPTSLQTEPQGNP-EGNHGGEGDSCPHGSPQGPLAPP 67
+P PPQ + +P S +PQG P +G + +G P G PQGP PP
Sbjct: 76 KPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP--PP 123
Score = 30.4 bits (67), Expect = 1.0
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 20 QPAERPPQ--LRPGAPTSLQTEPQGNP-EGNHGGEGDSCPHGSPQGPLAPPASPGPFATR 76
+P PPQ +P P +PQG P +G + +G P G PQGP PP + R
Sbjct: 96 KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPP-PPGKPQGP--PPQGDKSRSPR 152
Query: 77 SP 78
SP
Sbjct: 153 SP 154
Score = 30.4 bits (67), Expect = 1.0
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 20 QPAERPPQL-RPGAPTSLQTEPQGNP-EGNHGGEGDSCPHGSPQGPLAPP 67
+P PPQ + +P S +PQG P +G + +G P G PQGP PP
Sbjct: 137 KPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP--PP 184
Score = 29.6 bits (65), Expect = 1.8
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 32 APTSLQTEPQG-NPEGNHGGEGDSCPHGSPQGPLAPP 67
+P+ + PQG +P+G + +G P G PQGP PP
Sbjct: 28 SPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGP--PP 62
Score = 29.3 bits (64), Expect = 2.3
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 15 EGRQLQPAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGS-PQGPLAPPASPGP 72
+G + + ++ PP G P +PQG P +G G+ PQGP P GP
Sbjct: 205 QGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGP 263
Score = 29.3 bits (64), Expect = 2.3
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 20 QPAERPPQ--LRPGAPTSLQTEPQGNP-EGNHGGEGDSCPHGSPQGPLAPPASPGPFATR 76
+P PPQ +P P +PQG P +G + +G P G PQGP A S A R
Sbjct: 218 KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPP-PPGKPQGPPAQGGSKSQSA-R 275
Query: 77 SP 78
SP
Sbjct: 276 SP 277
Score = 28.5 bits (62), Expect = 3.9
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 29 RPGAPTSLQTEPQGNP-EGNHGGEGDSCPHGSPQGPLAPPASPGPFATRSP 78
+P P +PQG P +G + +G P G PQGP PP + RSP
Sbjct: 46 KPQGPPPPPGKPQGPPPQGGNKPQGPP-PPGKPQGP--PPQGDKSRSPRSP 93
Score = 28.1 bits (61), Expect = 5.1
Identities = 21/62 (33%), Positives = 23/62 (37%), Gaps = 11/62 (17%)
Query: 20 QPAERPPQ--LRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQG--------PLAPPAS 69
+P PPQ RP P +PQG P P G PQG P PP
Sbjct: 117 KPQGPPPQGGNRPQGPPP-PGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPP 175
Query: 70 PG 71
PG
Sbjct: 176 PG 177
Score = 28.1 bits (61), Expect = 5.1
Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 11/62 (17%)
Query: 20 QPAERPPQ--LRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQG--------PLAPPAS 69
+P PPQ +P P +PQG P P G PQG P PP
Sbjct: 178 KPQGPPPQGGKKPQGPPP-PGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQGPPPP 236
Query: 70 PG 71
PG
Sbjct: 237 PG 238
Score = 27.3 bits (59), Expect = 8.7
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 15 EGRQLQPAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHG--SPQGPLAPPASPGP 72
+G + + PP G P +PQG P +G P G PQGP P GP
Sbjct: 144 QGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP-PQGGKKPQGPPPPGKPQGP 202
>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
preproprotein [Homo sapiens]
Length = 178
Score = 36.2 bits (82), Expect = 0.019
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 16 GRQLQPAERPPQLRPGAPTSLQTEPQGNPE--GNHGGEGDSCPHGSPQGPLAPPASPGP 72
G + Q A PP G P PQG P G + + + P G PQGP PP P
Sbjct: 115 GSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRP 173
Score = 29.6 bits (65), Expect = 1.8
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 32 APTSLQTEPQG-NPEGNHGGEGDSCPHGSPQGPLAPP 67
+P+ + PQG +P+G + +G P G PQGP PP
Sbjct: 28 SPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGP--PP 62
Score = 28.5 bits (62), Expect = 3.9
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 29 RPGAPTSLQTEPQGNP-EGNHGGEGDSCPHGSPQGPLAPPASPGPFATRSP 78
+P P +PQG P +G + +G P G PQGP PP + RSP
Sbjct: 46 KPQGPPPPPGKPQGPPPQGGNKPQGPP-PPGKPQGP--PPQGDKSRSPRSP 93
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 36.2 bits (82), Expect = 0.019
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 16 GRQLQPAERPPQLRPGAPTSLQTEPQGNPE--GNHGGEGDSCPHGSPQGPLAPPASPGP 72
G + Q A PP G P PQG P G + + + P G PQGP PP P
Sbjct: 135 GSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRP 193
Score = 29.6 bits (65), Expect = 1.8
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 32 APTSLQTEPQG-NPEGNHGGEGDSCPHGSPQGPLAPP 67
+P+ + PQG +P+G + +G P G PQGP PP
Sbjct: 28 SPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGP--PP 62
Score = 29.6 bits (65), Expect = 1.8
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 24 RPPQLRPGAPTSLQTEPQGNP-EGNHGGEGDSCPHGSPQGPLAPPASPGPFATRSP 78
R P +P P +PQG P +G + +G P G PQGP A S A RSP
Sbjct: 91 RSPPGKPQGPPPQGGKPQGPPPQGGNKPQGPP-PPGKPQGPPAQGGSKSQSA-RSP 144
Score = 28.5 bits (62), Expect = 3.9
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 29 RPGAPTSLQTEPQGNP-EGNHGGEGDSCPHGSPQGPLAPPASPGPFATRSP 78
+P P +PQG P +G + +G P G PQGP PP + RSP
Sbjct: 46 KPQGPPPPPGKPQGPPPQGGNKPQGPP-PPGKPQGP--PPQGDKSRSPRSP 93
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 36.2 bits (82), Expect = 0.019
Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 5 PSDVSSECDREGRQLQPAERPPQLRPGAPTS---LQTEPQGNP---EGNHGGEGDSCPHG 58
P V + +G Q P R Q PG P + + E + P +G G +GD P G
Sbjct: 646 PGSVVQQEGLKGEQGAPGPRGHQGAPGPPGARGPIGPEGRDGPPGLQGLRGKKGDMGPPG 705
Query: 59 SP-----QGPLAPPASPGP 72
P QGP PP PGP
Sbjct: 706 IPGLLGLQGPPGPPGVPGP 724
Score = 32.0 bits (71), Expect = 0.35
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 3 KQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQGN-----PEGNHGGEGDSCPH 57
K V + REG + + E P PG P PQG+ +G G +GD
Sbjct: 1131 KGDKGVPGKPGREGTEGKKGEAGPPGLPGPPGI--AGPQGSQGERGADGEVGQKGDQGHP 1188
Query: 58 GSPQGPLAPPASPGP 72
G P G + PP +PGP
Sbjct: 1189 GVP-GFMGPPGNPGP 1202
Score = 29.6 bits (65), Expect = 1.8
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 16 GRQLQPAERPPQLRPGAPTSLQTE-PQG--NPEGNHGGEGD-SCPHGSPQGPLAPPASPG 71
G+ P P PG P E P G P+G G +GD P +G + PP PG
Sbjct: 1506 GKDGLPGRAGPMGEPGRPGQGGLEGPSGPIGPKGERGAKGDPGAPGVGLRGEMGPPGIPG 1565
Score = 29.3 bits (64), Expect = 2.3
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 11/55 (20%)
Query: 24 RPPQLRPGAPTSLQTEPQG--NPEGNHGGEGDSCPHGSP-----QGPLAPPASPG 71
RP +L P PT P G EG HG G + G+P GP PP S G
Sbjct: 887 RPGELGPQGPTG----PPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVG 937
Score = 28.9 bits (63), Expect = 3.0
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 26 PQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSP-----QGPLAPPASPG 71
P+ PG S + + P G G +G +GSP GP PP PG
Sbjct: 1322 PRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPRGPPGEPG 1372
Score = 28.5 bits (62), Expect = 3.9
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 45 EGNHGGEGDSCPHG--SPQGPLAPP---ASPGPFATRSPLFIFMRRSSLLSRSSSGYFSF 99
EG G +GD+ P G PQGP PP SPG P ++ S S G F
Sbjct: 1302 EGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGF 1361
Query: 100 DTDRSP 105
R P
Sbjct: 1362 LGPRGP 1367
>gi|169168458 PREDICTED: hypothetical protein [Homo sapiens]
Length = 353
Score = 35.8 bits (81), Expect = 0.024
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 12/124 (9%)
Query: 25 PPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPGPFATRSPLFIFMR 84
P Q+RPG P G G + H SP+ P AP AS ++ +
Sbjct: 129 PRQVRPGPVYKPAPARNHRPRGGRGKASPTSFHVSPRAPPAPLASMPSSVPKTSIESLGS 188
Query: 85 RSSLLSRSSSG---YFSFDTDRSPAPMSCDKSTQTPSPPCQAFN-HYLSAMASMRQAEPA 140
SSL S +S + R PA ST +P+P + YLS+++S + EP
Sbjct: 189 PSSLSSSQASEPLCPLKHPSHRPPA------STLSPNPTSSTESLGYLSSLSSSQPPEP- 241
Query: 141 DMRP 144
+RP
Sbjct: 242 -LRP 244
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 35.8 bits (81), Expect = 0.024
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 5 PSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPL 64
P S E +G Q QP P PG P + + P+ G EG P G P P
Sbjct: 1142 PQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPPGPQAEKGSEGIRGPSGLPGSP- 1200
Query: 65 APPASPG 71
PP PG
Sbjct: 1201 GPPGPPG 1207
Score = 35.4 bits (80), Expect = 0.032
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 16 GRQLQPAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSP--QGPLAPPASPGPF 73
G + +P + PG P + P+GN G +GD G P GP PP PG
Sbjct: 1114 GEKGEPGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKV 1173
Query: 74 ATRSP 78
+ P
Sbjct: 1174 GSPGP 1178
Score = 30.4 bits (67), Expect = 1.0
Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 6/108 (5%)
Query: 16 GRQLQPAERPPQLRPGAP-TSLQTEPQG--NPEGNHGGEGDSCPHGSPQGPLAPPASPGP 72
G++ Q E+ PG P S P G P G G G P GSP P P S G
Sbjct: 1374 GQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGAPGPSGSPGLP-GVPGSMGD 1432
Query: 73 FATRSPLFIFMRRSSLLSRSSSGYFSFDTDRSPAPMSCDKSTQTPSPP 120
+ F+R+ + + ++ T R PM + P PP
Sbjct: 1433 MVNYDEIKRFIRQE--IIKMFDERMAYYTSRMQFPMEMAAAPGRPGPP 1478
Score = 29.3 bits (64), Expect = 2.3
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 11/78 (14%)
Query: 6 SDVSSECDREGRQLQ------PAERPPQLRPGAPTSLQTEPQGNP--EGNHGGEG---DS 54
+ VS R+G+Q Q P E+ P+ G P QG+ G G G S
Sbjct: 840 ASVSGPPGRDGQQGQTGLRGTPGEKGPRGEKGEPGECSCPSQGDLIFSGMPGAPGLWMGS 899
Query: 55 CPHGSPQGPLAPPASPGP 72
PQGP P PGP
Sbjct: 900 SWQPGPQGPPGIPGPPGP 917
Score = 28.9 bits (63), Expect = 3.0
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 26 PQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSP-----QGPLAPPAS 69
PQ PGAP + P G G G+ GSP GP+ PP +
Sbjct: 792 PQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGA 840
Score = 28.5 bits (62), Expect = 3.9
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 25 PPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSP--QGPLAPPASPG 71
PP L PG P G+P G G +GD G P +GP P PG
Sbjct: 451 PPGL-PGPPGIGLPGTPGDPGGPPGPKGDKGSSGIPGKEGPGGKPGKPG 498
Score = 28.5 bits (62), Expect = 3.9
Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 8/44 (18%)
Query: 30 PGAPTSLQTEPQGNPEGNHGGEGDSCPHGSP--QGPLAPPASPG 71
PG P P G P G G EG GSP GP+ PP PG
Sbjct: 1020 PGLPG-----PPGLP-GQRGEEGPPGMRGSPGPPGPIGPPGFPG 1057
Score = 27.3 bits (59), Expect = 8.7
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 29 RPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPGP 72
+PG P S G G +G P G GP PP PGP
Sbjct: 1262 KPGPPGSTGRPGAEGEPGAMGPQGRPGPPGHV-GPPGPPGQPGP 1304
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 35.4 bits (80), Expect = 0.032
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 30 PGAPTSLQTEPQGNPEGNHGGEGDSCPHG-----------SPQGPLAPPASPGP 72
PG P + P+GN G +G+ P G PQGP+ PP GP
Sbjct: 675 PGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGP 728
Score = 32.7 bits (73), Expect = 0.21
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 44 PEGNHGGEGDSCPHGS--PQGPLAPPASPGPFATRSP 78
P+G GG+G P G PQGP P PGP P
Sbjct: 914 PKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGP 950
Score = 32.3 bits (72), Expect = 0.27
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 21 PAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGS--PQGPLAPPASPGPFATRSP 78
P E+ PQ +PG + P G+ G EG S G+ P GP P PGP +
Sbjct: 723 PGEKGPQGKPGLAGLPGAD---GPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGA 779
Query: 79 LFIFMRRSSLLSRSSSGYFSFDTD 102
+ + S + G+ F D
Sbjct: 780 DGVRGLKGSKGEKGEDGFPGFKGD 803
Score = 31.6 bits (70), Expect = 0.46
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 30 PGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPGPFATRSP 78
PG P + + P G G GD GP+ PP PGP + P
Sbjct: 1203 PGPPGPIGLQGLPGPPGEKGENGD-------VGPMGPPGPPGPRGPQGP 1244
Score = 30.8 bits (68), Expect = 0.79
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 24 RPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPG 71
R P +PG + + P G G +G P G P GP PP PG
Sbjct: 906 RGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFP-GPKGPPGPPG 952
Score = 30.8 bits (68), Expect = 0.79
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 42 GNPEGNHGGEGDSCPHGS--PQGPLAPPASPGPFATRSPL 79
G P+G G +G++ P G+ P G PP GP P+
Sbjct: 1284 GGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV 1323
Score = 30.0 bits (66), Expect = 1.3
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 21 PAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPG 71
P PQ PG + P+G G +G P G P GP P SPG
Sbjct: 1086 PGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLP-GPAGPAGSPG 1135
Score = 29.6 bits (65), Expect = 1.8
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 23 ERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPGP 72
ER + G P + P G+ G +G+ P G P P PP PGP
Sbjct: 1289 ERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDP-GPPGEPGP 1337
Score = 28.9 bits (63), Expect = 3.0
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 21 PAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPGPFATR 76
P +R P PGA + + + +G G EG G P GP P PGP R
Sbjct: 1371 PGKRGP---PGAAGAEGRQGEKGAKGEAGAEGPPGKTG-PVGPQGPAGKPGPEGLR 1422
Score = 28.1 bits (61), Expect = 5.1
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 45 EGNHGGEGDSCPHGSPQGPLAPPASPG 71
+G+ G +GD G P GPL PP PG
Sbjct: 1491 QGSPGAKGDGGIPG-PAGPLGPPGPPG 1516
Score = 27.7 bits (60), Expect = 6.7
Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 23 ERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHG--SPQGPLAPPASPGPFATRSP 78
ER PQ PG P + G G G++ P G P+G P PG P
Sbjct: 629 ERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGP 686
Score = 27.7 bits (60), Expect = 6.7
Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 30 PGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPGPFATRSP 78
PG P Q G+ G +GD G P GP PGP R P
Sbjct: 1329 PGPPGEPGPAGQDGVGGDKGEDGDPGQPGPP-GPSGEAGPPGPPGKRGP 1376
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 35.4 bits (80), Expect = 0.032
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 30 PGAPTSLQTEPQGNPEGNHGGEGDSCPHG-----------SPQGPLAPPASPGP 72
PG P + P+GN G +G+ P G PQGP+ PP GP
Sbjct: 624 PGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGP 677
Score = 32.7 bits (73), Expect = 0.21
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 44 PEGNHGGEGDSCPHGS--PQGPLAPPASPGPFATRSP 78
P+G GG+G P G PQGP P PGP P
Sbjct: 863 PKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGP 899
Score = 32.3 bits (72), Expect = 0.27
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 21 PAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGS--PQGPLAPPASPGPFATRSP 78
P E+ PQ +PG + P G+ G EG S G+ P GP P PGP +
Sbjct: 672 PGEKGPQGKPGLAGLPGAD---GPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGA 728
Query: 79 LFIFMRRSSLLSRSSSGYFSFDTD 102
+ + S + G+ F D
Sbjct: 729 DGVRGLKGSKGEKGEDGFPGFKGD 752
Score = 31.6 bits (70), Expect = 0.46
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 30 PGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPGPFATRSP 78
PG P + + P G G GD GP+ PP PGP + P
Sbjct: 1152 PGPPGPIGLQGLPGPPGEKGENGD-------VGPMGPPGPPGPRGPQGP 1193
Score = 30.8 bits (68), Expect = 0.79
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 24 RPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPG 71
R P +PG + + P G G +G P G P GP PP PG
Sbjct: 855 RGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFP-GPKGPPGPPG 901
Score = 30.8 bits (68), Expect = 0.79
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 42 GNPEGNHGGEGDSCPHGS--PQGPLAPPASPGPFATRSPL 79
G P+G G +G++ P G+ P G PP GP P+
Sbjct: 1233 GGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV 1272
Score = 30.0 bits (66), Expect = 1.3
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 21 PAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPG 71
P PQ PG + P+G G +G P G P GP P SPG
Sbjct: 1035 PGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLP-GPAGPAGSPG 1084
Score = 29.6 bits (65), Expect = 1.8
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 23 ERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPGP 72
ER + G P + P G+ G +G+ P G P P PP PGP
Sbjct: 1238 ERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDP-GPPGEPGP 1286
Score = 28.9 bits (63), Expect = 3.0
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 21 PAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPGPFATR 76
P +R P PGA + + + +G G EG G P GP P PGP R
Sbjct: 1320 PGKRGP---PGAAGAEGRQGEKGAKGEAGAEGPPGKTG-PVGPQGPAGKPGPEGLR 1371
Score = 28.1 bits (61), Expect = 5.1
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 45 EGNHGGEGDSCPHGSPQGPLAPPASPG 71
+G+ G +GD G P GPL PP PG
Sbjct: 1440 QGSPGAKGDGGIPG-PAGPLGPPGPPG 1465
Score = 27.7 bits (60), Expect = 6.7
Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 23 ERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHG--SPQGPLAPPASPGPFATRSP 78
ER PQ PG P + G G G++ P G P+G P PG P
Sbjct: 578 ERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGP 635
Score = 27.7 bits (60), Expect = 6.7
Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 30 PGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPGPFATRSP 78
PG P Q G+ G +GD G P GP PGP R P
Sbjct: 1278 PGPPGEPGPAGQDGVGGDKGEDGDPGQPGPP-GPSGEAGPPGPPGKRGP 1325
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 35.4 bits (80), Expect = 0.032
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 30 PGAPTSLQTEPQGNPEGNHGGEGDSCPHG-----------SPQGPLAPPASPGP 72
PG P + P+GN G +G+ P G PQGP+ PP GP
Sbjct: 663 PGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGP 716
Score = 32.7 bits (73), Expect = 0.21
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 44 PEGNHGGEGDSCPHGS--PQGPLAPPASPGPFATRSP 78
P+G GG+G P G PQGP P PGP P
Sbjct: 902 PKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGP 938
Score = 32.3 bits (72), Expect = 0.27
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 21 PAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGS--PQGPLAPPASPGPFATRSP 78
P E+ PQ +PG + P G+ G EG S G+ P GP P PGP +
Sbjct: 711 PGEKGPQGKPGLAGLPGAD---GPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGA 767
Query: 79 LFIFMRRSSLLSRSSSGYFSFDTD 102
+ + S + G+ F D
Sbjct: 768 DGVRGLKGSKGEKGEDGFPGFKGD 791
Score = 31.6 bits (70), Expect = 0.46
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 30 PGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPGPFATRSP 78
PG P + + P G G GD GP+ PP PGP + P
Sbjct: 1191 PGPPGPIGLQGLPGPPGEKGENGD-------VGPMGPPGPPGPRGPQGP 1232
Score = 30.8 bits (68), Expect = 0.79
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 24 RPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPG 71
R P +PG + + P G G +G P G P GP PP PG
Sbjct: 894 RGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFP-GPKGPPGPPG 940
Score = 30.8 bits (68), Expect = 0.79
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 42 GNPEGNHGGEGDSCPHGS--PQGPLAPPASPGPFATRSPL 79
G P+G G +G++ P G+ P G PP GP P+
Sbjct: 1272 GGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV 1311
Score = 30.0 bits (66), Expect = 1.3
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 21 PAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPG 71
P PQ PG + P+G G +G P G P GP P SPG
Sbjct: 1074 PGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLP-GPAGPAGSPG 1123
Score = 29.6 bits (65), Expect = 1.8
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 23 ERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPGP 72
ER + G P + P G+ G +G+ P G P P PP PGP
Sbjct: 1277 ERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDP-GPPGEPGP 1325
Score = 28.9 bits (63), Expect = 3.0
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 21 PAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPGPFATR 76
P +R P PGA + + + +G G EG G P GP P PGP R
Sbjct: 1359 PGKRGP---PGAAGAEGRQGEKGAKGEAGAEGPPGKTG-PVGPQGPAGKPGPEGLR 1410
Score = 28.1 bits (61), Expect = 5.1
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 45 EGNHGGEGDSCPHGSPQGPLAPPASPG 71
+G+ G +GD G P GPL PP PG
Sbjct: 1479 QGSPGAKGDGGIPG-PAGPLGPPGPPG 1504
Score = 27.7 bits (60), Expect = 6.7
Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 23 ERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHG--SPQGPLAPPASPGPFATRSP 78
ER PQ PG P + G G G++ P G P+G P PG P
Sbjct: 617 ERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGP 674
Score = 27.7 bits (60), Expect = 6.7
Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 30 PGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPGPFATRSP 78
PG P Q G+ G +GD G P GP PGP R P
Sbjct: 1317 PGPPGEPGPAGQDGVGGDKGEDGDPGQPGPP-GPSGEAGPPGPPGKRGP 1364
>gi|7705753 complement component 1, q subcomponent, A chain
precursor [Homo sapiens]
Length = 245
Score = 35.4 bits (80), Expect = 0.032
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 1 MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSP 60
+ + P E R GR+ +P + Q PGAP ++T Q G G +G+ P G+P
Sbjct: 25 LCRAPDGKKGEAGRPGRRGRPGLKGEQGEPGAP-GIRTGIQ----GLKGDQGEPGPSGNP 79
Query: 61 QGPLAPPASPGPFATR 76
G + P GP R
Sbjct: 80 -GKVGYPGPSGPLGAR 94
>gi|148277064 cut-like homeobox 1 isoform a [Homo sapiens]
Length = 1505
Score = 35.4 bits (80), Expect = 0.032
Identities = 39/134 (29%), Positives = 49/134 (36%), Gaps = 21/134 (15%)
Query: 6 SDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQ---- 61
SD+S R+G+ QP R P P P S G N G P G Q
Sbjct: 404 SDLSGSARRKGKD-QPESRRPGSLPAPPPSQLPRNPGEQASNTNGTHQFSPAGLSQDFFS 462
Query: 62 ----GPLAPPASPGPFATRSPL-----FIFMRRSSLLSRSSSGYFSFD-------TDRSP 105
P P AS G FA S L F ++ + S+S FS + +SP
Sbjct: 463 SSLASPSLPLASTGKFALNSLLQRQLMQSFYSKAMQEAGSTSMIFSTGPYSTNSISSQSP 522
Query: 106 APMSCDKSTQTPSP 119
S D + PSP
Sbjct: 523 LQQSPDVNGMAPSP 536
>gi|109240536 DC-STAMP domain containing 2 [Homo sapiens]
Length = 773
Score = 35.4 bits (80), Expect = 0.032
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 1 MAKQPSDVSSECDRE-GRQLQPAERPPQLRPGAPTSLQTEPQGN--PEGNHGGEGDSCPH 57
++ + + SS+ D E G Q + + P P S+ T P+ + PE + +G P
Sbjct: 693 LSMESTSESSDLDEEKGPQQRKHGQQPLPEAHQPVSILTSPEPHRPPETSSATKGAPTPA 752
Query: 58 GSPQGPLAPPASPGP 72
P PL+PP+ P P
Sbjct: 753 SEPSVPLSPPSLPDP 767
>gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens]
Length = 1378
Score = 35.4 bits (80), Expect = 0.032
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 16/78 (20%)
Query: 3 KQPSDVSSECDREGRQLQPAERPPQLR-----------PGAPTSLQTEPQGNPEGNHGGE 51
++PS S E R P R Q+R P+SL +EP G+P E
Sbjct: 857 RRPSSTSGSDSEESR---PRARAKQVRLTCMQSCSAPVNAGPSSLASEPPGSPSTPRVSE 913
Query: 52 --GDSCPHGSPQGPLAPP 67
GDS G P GP PP
Sbjct: 914 PSGDSSAAGQPLGPAPPP 931
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 35.4 bits (80), Expect = 0.032
Identities = 25/73 (34%), Positives = 29/73 (39%), Gaps = 11/73 (15%)
Query: 16 GRQLQPAERPPQLRPGA--------PTSLQTEPQG--NPEGNHGGEGDSCPHGSPQGPLA 65
G Q Q + P L G P Q PQG P+ HG +G H P GPL
Sbjct: 630 GPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQGMQ-RHPGPHGPLG 688
Query: 66 PPASPGPFATRSP 78
P PGP + P
Sbjct: 689 PQGPPGPQGSSGP 701
Score = 33.1 bits (74), Expect = 0.16
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 15 EGRQLQPAERPPQLRPGAPTSLQ--TEPQGN--PEGNHGGEGDSCPHG--SPQGPLAPPA 68
+G Q P P L P P Q + PQG+ P+G G +G P G PQG L P
Sbjct: 675 QGMQRHPGPHGP-LGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQG 733
Query: 69 SPGPFATRSP 78
PG + P
Sbjct: 734 PPGTQGMQGP 743
Score = 29.6 bits (65), Expect = 1.8
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 16 GRQLQPAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPP------AS 69
G Q P ++R Q G P+ G G G PQG L PP
Sbjct: 821 GHGPQEMRGPQEIRGMQGPPPQGSMLGPPQELRGPPGSQSQQGPPQGSLGPPPQGGMQGP 880
Query: 70 PGPFATRSP 78
PGP ++P
Sbjct: 881 PGPQGQQNP 889
Score = 29.3 bits (64), Expect = 2.3
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 25 PPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPA----SPGPFATRSPLF 80
PPQ G P S QG P+G+ G P G QGP P + GP ++ P+
Sbjct: 848 PPQELRGPPGS--QSQQGPPQGSLGPP----PQGGMQGPPGPQGQQNPARGPHPSQGPIP 901
Query: 81 IFMRRSSLLSRSSSGYFSFDTDRSPAP 107
+++ LL F+ + + P
Sbjct: 902 FQQQKTPLLGDGPRAPFNQEGQSTGPP 928
Score = 27.7 bits (60), Expect = 6.7
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 10/57 (17%)
Query: 26 PQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGP----LAPPASPGPFATRSP 78
PQ PG T+ P G G +G PHG GP + P S GP +P
Sbjct: 731 PQGPPG------TQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLNP 781
>gi|4502827 cholinergic receptor, nicotinic, alpha 4 subunit
precursor [Homo sapiens]
Length = 627
Score = 34.7 bits (78), Expect = 0.054
Identities = 32/117 (27%), Positives = 44/117 (37%), Gaps = 15/117 (12%)
Query: 1 MAKQPSDVSSECDREGRQLQPAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSP 60
+ K+PS V C R + P+ P EP+G P G + P S
Sbjct: 357 LMKRPSVVKDNCRRLIESMHKMASAPRFWP--------EPEGEPPATSGTQSLHPPSPSF 408
Query: 61 QGPLAPPASPGPFATRSPLFIFMRRSSLLSRSSSGYFSFDTDRSPAPMSCDKSTQTP 117
PL PA PGP + +SP + L + +S + SP P TQ P
Sbjct: 409 CVPLDVPAEPGP-SCKSPSDQLPPQQPLEAEKASPH------PSPGPCRPPHGTQAP 458
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 34.7 bits (78), Expect = 0.054
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 16 GRQLQPAERPPQLRPGAPTSLQTEPQGNPE--GNHGGEGDSCPHGSPQGPLAPPASPGP 72
G + + A PP G P PQG P G + + + P G PQGP PP P
Sbjct: 353 GSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRP 411
Score = 33.5 bits (75), Expect = 0.12
Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 7 DVSSECDREGRQLQPAERPPQ--LRPGAPTSLQTEPQGNP-EGNHGGEGDSCPHGSPQGP 63
DVS E P PPQ +P P S +PQG P +G + +G P G PQGP
Sbjct: 22 DVSQEESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP 81
Query: 64 LAPP 67
PP
Sbjct: 82 --PP 83
Score = 30.8 bits (68), Expect = 0.79
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 13/108 (12%)
Query: 20 QPAERPPQL-RPGAPTSLQTEPQGNP-EGNHGGEGDSCPHGSPQGP-----LAPPASPGP 72
+P PPQ + +P S +PQG P +G + +G P G PQGP P P P
Sbjct: 97 KPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPP 156
Query: 73 FATRSPLFIFMRRSSLLSRSSSGYFSFDTDRSPAPMSCDKSTQTPSPP 120
+ P +S SRS G + P P ++ P PP
Sbjct: 157 GKPQGPPPQGDNKSR-SSRSPPG-----KPQGPPPQGGNQPQGPPPPP 198
Score = 30.8 bits (68), Expect = 0.79
Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 18/74 (24%)
Query: 16 GRQLQPAERPPQLRPGAPTSLQTEPQGNP----------EGNHGGEGDSCPHGSPQG--- 62
G Q Q PP G P +PQG P +G++ + P G PQG
Sbjct: 188 GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPP 247
Query: 63 -----PLAPPASPG 71
P PP PG
Sbjct: 248 QGGNQPQGPPPPPG 261
Score = 30.4 bits (67), Expect = 1.0
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 9/49 (18%)
Query: 32 APTSLQTEPQGNP-EGNHGGEGDSCPHGSPQG--------PLAPPASPG 71
+P+ + PQG P +G + +G P G PQG P PP PG
Sbjct: 28 SPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPG 76
Score = 29.6 bits (65), Expect = 1.8
Identities = 22/74 (29%), Positives = 24/74 (32%), Gaps = 18/74 (24%)
Query: 16 GRQLQPAERPPQLRPGAPTSLQTEPQG----------NPEGNHGGEGDSCPHGSPQG--- 62
G Q Q PP G P +PQG P+G P G PQG
Sbjct: 250 GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPP 309
Query: 63 -----PLAPPASPG 71
P PP PG
Sbjct: 310 QGGNQPQGPPPPPG 323
Score = 29.3 bits (64), Expect = 2.3
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 20 QPAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGS-PQGPLAPPASPGP 72
Q A PP G P +PQG P +G G+ PQGP P GP
Sbjct: 233 QSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGP 286
Score = 29.3 bits (64), Expect = 2.3
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 20 QPAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPH------GSPQGPLAPPASPGPF 73
+P PPQ G+ + P G P+G EG++ G+PQ P APPA
Sbjct: 344 KPQGPPPQ--GGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQG 401
Query: 74 ATRSP 78
R P
Sbjct: 402 PPRPP 406
Score = 28.9 bits (63), Expect = 3.0
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 14/74 (18%)
Query: 16 GRQLQPAERPPQLRPGAPTSLQTEPQG-----------NPEGNHGGEGDSCPHGSPQGPL 64
G + Q PP G P +PQG P+G + +G P G PQGP
Sbjct: 44 GNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPP-PPGKPQGP- 101
Query: 65 APPASPGPFATRSP 78
PP + RSP
Sbjct: 102 -PPQGDKSRSPRSP 114
Score = 28.1 bits (61), Expect = 5.1
Identities = 25/73 (34%), Positives = 27/73 (36%), Gaps = 17/73 (23%)
Query: 16 GRQLQPAERPPQLRPGAPTSLQTEPQGNPE-GNHGG---EGDSC-----PHGSPQG---- 62
G Q Q PP G P +PQG P G G +GD P G PQG
Sbjct: 65 GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQ 124
Query: 63 ----PLAPPASPG 71
P PP PG
Sbjct: 125 GGNQPQGPPPPPG 137
Score = 28.1 bits (61), Expect = 5.1
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 16 GRQLQPAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGS-PQGPLAPPASPGP 72
G + + + PP G P +PQG P +G G+ PQGP P GP
Sbjct: 291 GSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGP 348
Score = 28.1 bits (61), Expect = 5.1
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 20 QPAERPPQ--LRPGAPTSLQTEPQGNP-EGNHGGEGDSCPHGSPQGPLAPPASPGPFATR 76
+P PPQ +P P +PQG P +G + +G P G PQGP P + R
Sbjct: 303 KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPP-PPGKPQGP-PPQGGSKSRSAR 360
Query: 77 SP 78
SP
Sbjct: 361 SP 362
Score = 27.7 bits (60), Expect = 6.7
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 20 QPAERPPQ--LRPGAPTSLQTEPQGNP-EGNHGGEGDSCPHGSPQGPLAPPASPGPFATR 76
+P PPQ +P P +PQG P +G + +G P G PQGP P + R
Sbjct: 179 KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPP-PPGKPQGP-PPQGDNKSQSAR 236
Query: 77 SP 78
SP
Sbjct: 237 SP 238
Score = 27.7 bits (60), Expect = 6.7
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 20 QPAERPPQLRPGAPTSLQTEPQGNPEGN--HGG---EGDSCPHGSPQGPLAPP 67
+P PPQ G+ + P G P+G GG +G P G PQGP PP
Sbjct: 282 KPQGPPPQ--GGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP--PP 330
Score = 27.3 bits (59), Expect = 8.7
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 20 QPAERPPQ--LRPGAPTSLQTEPQGNP-EGNHGGEGDSCPHGSPQGPLAPP 67
+P PPQ + + S +PQG P +G + +G P G PQGP PP
Sbjct: 158 KPQGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP--PP 206
>gi|158534055 round spermatid basic protein 1-like [Homo sapiens]
Length = 846
Score = 34.7 bits (78), Expect = 0.054
Identities = 52/169 (30%), Positives = 71/169 (42%), Gaps = 23/169 (13%)
Query: 2 AKQPSDVSSECDREGRQLQPAERPPQLRPGAPTS--LQTEPQGNPEGNHGGEGDSCPHGS 59
A P+ SE + G+ LQ + R P PG+ ++ ++TE + P GEG S G
Sbjct: 13 AAAPTATVSEKEPFGK-LQLSSRDP---PGSLSAKKVRTEEKKAPR-RVNGEGGS---GG 64
Query: 60 PQGPLAPPASPGPFATRSPL-FIFMRRSSLLSRSSS-GYFSFDTDRSPAPMSCDKSTQTP 117
L PPA+P P + SP + F S+ S SSS FSF + P S S P
Sbjct: 65 NSRQLQPPAAPSPQSYGSPASWSFAPLSAAPSPSSSRSSFSFSAG-TAVPSSASASLSQP 123
Query: 118 SP----------PCQAFNHYLSAMASMRQAEPADMRPEIWIAQELRRIG 156
P Q + L A A+ A RP+ +E RR G
Sbjct: 124 VPRKLLVPPTLLHAQPHHLLLPAAAAAASANAKSRRPKEKREKERRRHG 172
>gi|21361320 TRK-fused [Homo sapiens]
Length = 400
Score = 34.7 bits (78), Expect = 0.054
Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 5/124 (4%)
Query: 22 AERPPQLRPGAP--TSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPGPFATRSPL 79
A PP ++P P T QT+ G EG + Q P APP P + +
Sbjct: 216 AAHPPGVQPQQPPYTGAQTQA-GQIEGQMYQQYQQQAGYGAQQPQAPPQQPQQYGIQYSA 274
Query: 80 FIFMRRSSLLSRSSSGYFSFDTDRSPAPMSCDKSTQTPSPPCQAF--NHYLSAMASMRQA 137
+ + GY T ++PAP + Q P+ P Q + ++Y + + + +
Sbjct: 275 SYSQQTGPQQPQQFQGYGQQPTSQAPAPAFSGQPQQLPAQPPQQYQASNYPAQTYTAQTS 334
Query: 138 EPAD 141
+P +
Sbjct: 335 QPTN 338
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 34.7 bits (78), Expect = 0.054
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 14 REGRQLQPAERPPQLRPGAPTSLQTEPQGNPE----------GNHGGEGDSCPHGSPQGP 63
+EG + + A PP G P +PQG P G + + + P G PQGP
Sbjct: 168 QEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQAPPAGKPQGP 227
Query: 64 LAPPASPGP 72
PP P
Sbjct: 228 PPPPQGGRP 236
Score = 28.9 bits (63), Expect = 3.0
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 14/66 (21%)
Query: 15 EGRQLQPAERPPQLRPGAPTSLQTEPQGNP-EGNHGGEGDSCPHGSPQG--------PLA 65
EGR+ Q +P RP P +PQG P +G + +G P G P+G
Sbjct: 37 EGRRPQGGNQPQ--RPPPPPG---KPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQG 91
Query: 66 PPASPG 71
PP PG
Sbjct: 92 PPPHPG 97
>gi|56090139 TRK-fused [Homo sapiens]
Length = 400
Score = 34.7 bits (78), Expect = 0.054
Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 5/124 (4%)
Query: 22 AERPPQLRPGAP--TSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPGPFATRSPL 79
A PP ++P P T QT+ G EG + Q P APP P + +
Sbjct: 216 AAHPPGVQPQQPPYTGAQTQA-GQIEGQMYQQYQQQAGYGAQQPQAPPQQPQQYGIQYSA 274
Query: 80 FIFMRRSSLLSRSSSGYFSFDTDRSPAPMSCDKSTQTPSPPCQAF--NHYLSAMASMRQA 137
+ + GY T ++PAP + Q P+ P Q + ++Y + + + +
Sbjct: 275 SYSQQTGPQQPQQFQGYGQQPTSQAPAPAFSGQPQQLPAQPPQQYQASNYPAQTYTAQTS 334
Query: 138 EPAD 141
+P +
Sbjct: 335 QPTN 338
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 34.3 bits (77), Expect = 0.071
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 44 PEGNHGGEGDSCPHG--SPQGPLAPPASPGPFATRSP 78
P+GN GG+G + P G P GP P PGP P
Sbjct: 932 PKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGP 968
Score = 34.3 bits (77), Expect = 0.071
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 30 PGAPTSLQTEPQGNPEGNHGGEGDSCPHGS--PQGPLAPPASPGPFATRSPL 79
PG P + P G P+G G +G+S P G+ P GP PP GP + P+
Sbjct: 1293 PGLPG--EGGPPG-PKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPV 1341
Score = 33.9 bits (76), Expect = 0.093
Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 21 PAERPPQLRPGAPTSLQT--EPQGNPEGNHGGEGDSCPHG------SPQGPLAPPASPGP 72
P P ++ PG P + T E G P G G +G+ P GP P PGP
Sbjct: 423 PTSSPSEIGPGMPANQDTIYEGIGGPRGEKGQKGEPAIIEPGMLIEGPPGPEGPAGLPGP 482
Query: 73 FATRSP 78
T P
Sbjct: 483 PGTMGP 488
Score = 33.5 bits (75), Expect = 0.12
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 30 PGAPTSLQTEPQGNPEGNHGGEGDSCPHG-----------SPQGPLAPPASPGP 72
PG P + Q P+GN G +G+ P G PQG + PP GP
Sbjct: 693 PGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGNPGAQGLPGPQGAIGPPGEKGP 746
Score = 32.7 bits (73), Expect = 0.21
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 30 PGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPGPFATRSP 78
PG P Q P G+ G +G+ GSP GP P GP R P
Sbjct: 1347 PGPPGEPGPAGQDGPPGDKGDDGEPGQTGSP-GPTGEPGPSGPPGKRGP 1394
Score = 31.6 bits (70), Expect = 0.46
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 21 PAERPPQLRPGAPTSLQTE-PQGNP--EGNHGGEGDSCPHGSPQGPLAPPASPG 71
P E+ P +PG P + P G+P EG G +G P G PQGP+ P G
Sbjct: 741 PGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPG-PQGPIGYPGPRG 793
Score = 31.2 bits (69), Expect = 0.60
Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 5 PSDVSSECDREGRQL---QPAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHG--S 59
PS E G+Q Q + P+ PG P + + P G G GD G
Sbjct: 1193 PSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPG 1252
Query: 60 PQGPLAPPASPGPFATRSP 78
P GP P +PG + P
Sbjct: 1253 PPGPRGPSGAPGADGPQGP 1271
Score = 31.2 bits (69), Expect = 0.60
Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 26 PQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPG 71
PQ PG P P G G G P G P GP+ PP PG
Sbjct: 1427 PQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPP-GPMGPPGLPG 1471
Score = 29.3 bits (64), Expect = 2.3
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 17/80 (21%)
Query: 5 PSDVSSECDR--EGRQLQPAERPPQLRPGAPTSLQTEPQGNP--EGNHGGEGDSCPHGSP 60
P + DR +G P E+ + PG + P G P +G G +G+ P G P
Sbjct: 621 PGQTGPKGDRGFDGLAGLPGEKGHRGDPGP-----SGPPGPPGDDGERGDDGEVGPRGLP 675
Query: 61 Q--------GPLAPPASPGP 72
GP PP PGP
Sbjct: 676 GEPGPRGLLGPKGPPGPPGP 695
Score = 28.9 bits (63), Expect = 3.0
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 21 PAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHG--SPQGPLAPPASPG 71
P PQ PG + P+G G +G P G P GP+ PP G
Sbjct: 1104 PGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDG 1156
Score = 28.9 bits (63), Expect = 3.0
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 40 PQGNPEGNHGGEGDSCPHGSPQGPLAPPASPGP 72
PQG+ G G +G + P G P GP PP PGP
Sbjct: 1508 PQGS-SGPKGEQGITGPSG-PIGPPGPPGLPGP 1538
Score = 27.3 bits (59), Expect = 8.7
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 21 PAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGSPQGPLAPPASPGP 72
P E P + G P + + G+ G G+ P G P G PP GP
Sbjct: 1350 PGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSG-PPGKRGPPGPAGP 1400
Score = 27.3 bits (59), Expect = 8.7
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 20 QPAERPPQLRPGAPTSLQTEPQGNPEGNHGGEGDSCPHGS--PQGPLAPPASPGPFATR 76
+P P + G P E + +G G G P G P GP P PGP R
Sbjct: 1382 EPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLR 1440
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,986,167
Number of Sequences: 37866
Number of extensions: 605299
Number of successful extensions: 5952
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 484
Number of HSP's that attempted gapping in prelim test: 4238
Number of HSP's gapped (non-prelim): 1961
length of query: 198
length of database: 18,247,518
effective HSP length: 97
effective length of query: 101
effective length of database: 14,574,516
effective search space: 1472026116
effective search space used: 1472026116
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.