Guide to the Human Genome
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Name: RSBN1L Sequence: fasta or formatted (846aa) NCBI GI: 158534055
Description:

round spermatid basic protein 1-like

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         61           6
 C cysteine            1.2         10           1
 D aspartate           5.6         47           3
 E glutamate           7.9         67           2
 F phenylalanine       3.5         30           1
 G glycine             5.0         42           2
 H histidine           3.4         29           2
 I isoleucine          4.3         36           1
 K lysine              9.7         82           7
 L leucine             7.8         66           3
 M methionine          2.1         18           1
 N asparagine          4.5         38           2
 P proline             6.7         57           2
 Q glutamine           3.9         33           2
 R arginine            5.3         45           3
 S serine              9.1         77           3
 T threonine           4.3         36           3
 V valine              5.8         49           2
 W tryptophan          0.7          6           1
 Y tyrosine            2.0         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   round spermatid basic protein 1-like 
RSBN1                 0.403   round spermatid basic protein 1 
LOC100133599          0.021   PREDICTED: hypothetical protein 
LOC100133599          0.021   PREDICTED: hypothetical protein 
SFRS12                0.020   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.020   splicing factor, arginine/serine-rich 12 isoform b [...
TAF3                  0.018   RNA polymerase II transcription factor TAFII140 [Ho...
LOC100294088          0.018   PREDICTED: hypothetical protein, partial 
THOC2                 0.017   THO complex 2 
RNF20                 0.017   ring finger protein 20 
SFRS18                0.016   splicing factor, arginine/serine-rich 130 
SFRS18                0.016   splicing factor, arginine/serine-rich 130 
WDR87                 0.016   NYD-SP11 protein 
MAP1B                 0.015   microtubule-associated protein 1B 
BAT2D1                0.015   HBxAg transactivated protein 2 
RBM25                 0.014   RNA binding motif protein 25 
MAP7D1                0.014   MAP7 domain containing 1 
LMOD1                 0.014   leiomodin 1 (smooth muscle) 
FAM133B               0.014   hypothetical protein LOC257415 isoform 2 
FAM133B               0.014   hypothetical protein LOC257415 isoform 1 
PRPF38B               0.014   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
HDGF2                 0.014   hepatoma-derived growth factor-related protein 2 iso...
HDGF2                 0.014   hepatoma-derived growth factor-related protein 2 iso...
FAM133A               0.014   hypothetical protein LOC286499 
OTX1                  0.013   orthodenticle homeobox 1 
LOC100294364          0.013   PREDICTED: hypothetical protein 
MAP7                  0.013   microtubule-associated protein 7 
NKAPL                 0.013   NFKB activating protein-like 
LARP7                 0.012   La ribonucleoprotein domain family, member 7 
LARP7                 0.012   La ribonucleoprotein domain family, member 7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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