Guide to the Human Genome
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Name: LOC730755 Sequence: fasta or formatted (128aa) NCBI GI: 113427417
Description:

PREDICTED: similar to keratin associated protein 2-4

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.6          2           1
 C cysteine           27.3         35           3
 D aspartate           1.6          2           1
 E glutamate           1.6          2           1
 F phenylalanine       0.0          0           0
 G glycine             5.5          7           3
 H histidine           0.0          0           0
 I isoleucine          1.6          2           1
 K lysine              0.0          0           0
 L leucine             2.3          3           1
 M methionine          0.8          1           1
 N asparagine          0.0          0           0
 P proline            14.1         18           2
 Q glutamine           4.7          6           1
 R arginine            8.6         11           2
 S serine             10.2         13           2
 T threonine          11.7         15           2
 V valine              7.0          9           2
 W tryptophan          0.8          1           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to keratin associated protein 2-... 
KRTAP2-4              1.000   keratin associated protein 2-4 
KRTAP2-1              0.993   keratin associated protein KRTAP2.1A 
KRTAP2-2              0.924   keratin associated protein 2-2 
KRTAP4-3              0.353   keratin associated protein 4-3 
KRTAP4-2              0.349   keratin associated protein 4-2 
KRTAP4-9              0.349   PREDICTED: keratin associated protein 4-9 isoform 2...
KRTAP4-12             0.349   keratin associated protein 4-12 
KRTAP4-5              0.343   keratin associated protein 4-5 
KRTAP4-4              0.339   keratin associated protein 4.4 
KRTAP4-11             0.336   keratin associated protein 4-11 
KRTAP4-9              0.336   keratin associated protein 4-9 
KRTAP4-9              0.332   PREDICTED: keratin associated protein 4-9 isoform 1...
KRTAP4-8              0.329   PREDICTED: keratin associated protein 4-8 
KRTAP4-8              0.325   PREDICTED: keratin associated protein 4-8 isoform 3...
LOC100134267          0.325   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-7              0.325   keratin associated protein 4-7 
KRTAP4-7              0.325   PREDICTED: keratin associated protein 4-7 
KRTAP4-8              0.315   PREDICTED: keratin associated protein 4-8 isoform 2...
LOC100134267          0.315   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-8              0.311   PREDICTED: keratin associated protein 4-8 isoform 1...
LOC100134267          0.311   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-8              0.311   PREDICTED: keratin associated protein 4.8 
KRTAP4-8              0.311   keratin associated protein 4.8 
KRTAP4-1              0.294   keratin associated protein 4-1 
LOC728318             0.277   PREDICTED: hypothetical protein 
LOC728318             0.277   PREDICTED: hypothetical protein 
LOC728318             0.277   PREDICTED: hypothetical protein 
LOC728341             0.270   PREDICTED: keratin-associated protein 9-2-like 1-li...
KRTAP9-2              0.266   keratin associated protein 9.2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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