Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PCSK6 Sequence: fasta or formatted (962aa) NCBI GI: 20336184
Description:

paired basic amino acid cleaving system 4 isoform h preproprotein

Referenced in:

Peptide-processing Enzymes

Other entries for this name:
alt prot [956aa] paired basic amino acid cleaving system 4 isoform b preproprotein
alt prot [975aa] paired basic amino acid cleaving system 4 isoform g preproprotein
alt prot [487aa] paired basic amino acid cleaving system 4 isoform c preproprotein
alt prot [623aa] paired basic amino acid cleaving system 4 isoform e preproprotein
alt prot [652aa] paired basic amino acid cleaving system 4 isoform d preproprotein
alt prot [664aa] paired basic amino acid cleaving system 4 isoform f preproprotein
alt prot [969aa] paired basic amino acid cleaving system 4 isoform a preproprotein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         87           4
 C cysteine            4.7         45           1
 D aspartate           4.9         47           3
 E glutamate           5.4         52           2
 F phenylalanine       2.5         24           1
 G glycine             9.4         90           2
 H histidine           4.0         38           2
 I isoleucine          2.8         27           2
 K lysine              4.7         45           2
 L leucine             6.9         66           4
 M methionine          1.4         13           1
 N asparagine          3.2         31           2
 P proline             7.0         67           3
 Q glutamine           3.2         31           3
 R arginine            6.3         61           2
 S serine              7.4         71           2
 T threonine           5.0         48           2
 V valine              6.4         62           3
 W tryptophan          2.1         20           1
 Y tyrosine            3.8         37           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   paired basic amino acid cleaving system 4 isoform h ... 
PCSK6                 0.994   paired basic amino acid cleaving system 4 isoform g ...
PCSK6                 0.921   paired basic amino acid cleaving system 4 isoform b ...
PCSK6                 0.916   paired basic amino acid cleaving system 4 isoform a p...
PCSK6                 0.627   paired basic amino acid cleaving system 4 isoform e ...
PCSK6                 0.627   paired basic amino acid cleaving system 4 isoform f ...
PCSK6                 0.627   paired basic amino acid cleaving system 4 isoform d ...
PCSK5                 0.504   proprotein convertase subtilisin/kexin type 5 prepro...
PCSK6                 0.478   paired basic amino acid cleaving system 4 isoform c ...
FURIN                 0.320   furin preproprotein 
PCSK4                 0.291   proprotein convertase subtilisin/kexin type 4 
PCSK1                 0.284   proprotein convertase subtilisin/kexin type 1 prepro...
PCSK2                 0.237   proprotein convertase subtilisin/kexin type 2 
PCSK7                 0.215   proprotein convertase subtilisin/kexin type 7 prepro...
LOC100292811          0.055   PREDICTED: similar to proprotein convertase subtili...
LOC100290671          0.055   PREDICTED: hypothetical protein XP_002347099 
LOC100289618          0.055   PREDICTED: hypothetical protein XP_002342982 
FRAS1                 0.045   Fraser syndrome 1 
RSPO3                 0.020   R-spondin 3 
ERBB2                 0.019   erbB-2 isoform b 
ERBB2                 0.019   erbB-2 isoform a 
SCARF2                0.019   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.019   scavenger receptor class F, member 2 isoform 2 [Homo...
ERBB4                 0.018   v-erb-a erythroblastic leukemia viral oncogene homo...
ERBB4                 0.018   v-erb-a erythroblastic leukemia viral oncogene homolo...
EGFR                  0.018   epidermal growth factor receptor isoform a precursor...
EGFR                  0.018   epidermal growth factor receptor isoform d precursor...
EGFR                  0.018   epidermal growth factor receptor isoform b precursor...
ERBB3                 0.018   erbB-3 isoform 1 precursor 
RSPO4                 0.017   R-spondin family, member 4 isoform 1 precursor [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press