Guide to the Human Genome
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Name: RSPO4 Sequence: fasta or formatted (234aa) NCBI GI: 83722284
Description:

R-spondin family, member 4 isoform 1 precursor

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [172aa] R-spondin family, member 4 isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         11           2
 C cysteine            9.8         23           1
 D aspartate           3.0          7           1
 E glutamate           6.0         14           2
 F phenylalanine       2.6          6           1
 G glycine            11.5         27           2
 H histidine           2.1          5           1
 I isoleucine          3.0          7           2
 K lysine              6.4         15           2
 L leucine             8.5         20           4
 M methionine          0.9          2           1
 N asparagine          2.6          6           1
 P proline             6.8         16           2
 Q glutamine           6.0         14           2
 R arginine           11.5         27           2
 S serine              4.3         10           1
 T threonine           4.3         10           1
 V valine              3.0          7           1
 W tryptophan          1.3          3           1
 Y tyrosine            1.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   R-spondin family, member 4 isoform 1 precursor [Homo... 
RSPO4                 0.588   R-spondin family, member 4 isoform 2 precursor [Homo...
RSPO2                 0.378   R-spondin family, member 2 
RSPO3                 0.320   R-spondin 3 
RSPO1                 0.308   R-spondin1 
PCSK6                 0.071   paired basic amino acid cleaving system 4 isoform h ...
PCSK6                 0.071   paired basic amino acid cleaving system 4 isoform g ...
PCSK6                 0.071   paired basic amino acid cleaving system 4 isoform a p...
PCSK6                 0.071   paired basic amino acid cleaving system 4 isoform b ...
LOC100292811          0.067   PREDICTED: similar to proprotein convertase subtili...
LOC100290671          0.067   PREDICTED: hypothetical protein XP_002347099 
LOC100289618          0.067   PREDICTED: hypothetical protein XP_002342982 
FRAS1                 0.065   Fraser syndrome 1 
PCSK5                 0.061   proprotein convertase subtilisin/kexin type 5 prepro...
MEGF6                 0.037   EGF-like-domain, multiple 3 
TNFRSF6B              0.033   tumor necrosis factor receptor superfamily, member 6...
TNFRSF6B              0.033   tumor necrosis factor receptor superfamily, member 6b...
PEAR1                 0.031   platelet endothelial aggregation receptor 1 
WIF1                  0.031   WNT inhibitory factor 1 precursor 
INSRR                 0.029   insulin receptor-related receptor precursor 
CFP                   0.029   complement factor properdin precursor 
LAMC1                 0.029   laminin, gamma 1 precursor 
INSR                  0.029   insulin receptor isoform Short precursor 
INSR                  0.029   insulin receptor isoform Long precursor 
CFP                   0.029   complement factor properdin precursor 
IGF1R                 0.027   insulin-like growth factor 1 receptor precursor [Homo...
SSPO                  0.027   SCO-spondin 
WISP2                 0.027   WNT1 inducible signaling pathway protein 2 precursor ...
BAI2                  0.027   brain-specific angiogenesis inhibitor 2 
THSD7A                0.024   thrombospondin, type I, domain containing 7A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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