Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PCSK6 Sequence: fasta or formatted (969aa) NCBI GI: 4505577
Description:

paired basic amino acid cleaving system 4 isoform a preproprotein

Referenced in:

Peptide-processing Enzymes

Other entries for this name:
alt prot [956aa] paired basic amino acid cleaving system 4 isoform b preproprotein
alt prot [975aa] paired basic amino acid cleaving system 4 isoform g preproprotein
alt prot [962aa] paired basic amino acid cleaving system 4 isoform h preproprotein
alt prot [487aa] paired basic amino acid cleaving system 4 isoform c preproprotein
alt prot [623aa] paired basic amino acid cleaving system 4 isoform e preproprotein
alt prot [652aa] paired basic amino acid cleaving system 4 isoform d preproprotein
alt prot [664aa] paired basic amino acid cleaving system 4 isoform f preproprotein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         83           4
 C cysteine            5.8         56           2
 D aspartate           5.0         48           3
 E glutamate           5.5         53           2
 F phenylalanine       2.7         26           1
 G glycine             8.5         82           2
 H histidine           3.5         34           2
 I isoleucine          3.0         29           2
 K lysine              4.9         47           2
 L leucine             7.0         68           4
 M methionine          1.2         12           1
 N asparagine          3.8         37           2
 P proline             6.2         60           3
 Q glutamine           3.4         33           3
 R arginine            6.2         60           2
 S serine              7.7         75           2
 T threonine           5.7         55           2
 V valine              5.9         57           3
 W tryptophan          1.9         18           1
 Y tyrosine            3.7         36           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   paired basic amino acid cleaving system 4 isoform a p... 
PCSK6                 0.983   paired basic amino acid cleaving system 4 isoform b ...
PCSK6                 0.926   paired basic amino acid cleaving system 4 isoform g ...
PCSK6                 0.909   paired basic amino acid cleaving system 4 isoform h ...
PCSK6                 0.622   paired basic amino acid cleaving system 4 isoform e ...
PCSK6                 0.622   paired basic amino acid cleaving system 4 isoform f ...
PCSK6                 0.622   paired basic amino acid cleaving system 4 isoform d ...
PCSK5                 0.523   proprotein convertase subtilisin/kexin type 5 prepro...
PCSK6                 0.474   paired basic amino acid cleaving system 4 isoform c ...
FURIN                 0.315   furin preproprotein 
PCSK4                 0.285   proprotein convertase subtilisin/kexin type 4 
PCSK1                 0.282   proprotein convertase subtilisin/kexin type 1 prepro...
PCSK2                 0.235   proprotein convertase subtilisin/kexin type 2 
PCSK7                 0.214   proprotein convertase subtilisin/kexin type 7 prepro...
LOC100292811          0.057   PREDICTED: similar to proprotein convertase subtili...
LOC100290671          0.057   PREDICTED: hypothetical protein XP_002347099 
LOC100289618          0.057   PREDICTED: hypothetical protein XP_002342982 
FRAS1                 0.051   Fraser syndrome 1 
CRELD1                0.021   cysteine-rich with EGF-like domains 1 isoform 3 [Ho...
CRELD1                0.021   cysteine-rich with EGF-like domains 1 isoform 1 [Hom...
CRELD1                0.021   cysteine-rich with EGF-like domains 1 isoform 2 [Hom...
RSPO3                 0.020   R-spondin 3 
ERBB3                 0.019   erbB-3 isoform 1 precursor 
ERBB4                 0.018   v-erb-a erythroblastic leukemia viral oncogene homo...
ERBB4                 0.018   v-erb-a erythroblastic leukemia viral oncogene homolo...
SCARF2                0.018   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.018   scavenger receptor class F, member 2 isoform 2 [Homo...
CRELD2                0.018   cysteine-rich with EGF-like domains 2 isoform b [Ho...
EGFR                  0.018   epidermal growth factor receptor isoform a precursor...
EGFR                  0.018   epidermal growth factor receptor isoform d precursor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press