Guide to the Human Genome
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Name: ERBB2 Sequence: fasta or formatted (1225aa) NCBI GI: 54792098
Description:

erbB-2 isoform b

Referenced in:

Epidermal Growth Factor
Leucine-rich Repeat Family
PDZ Domain

Other entries for this name:
alt prot [1255aa] erbB-2 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         78           2
 C cysteine            4.7         57           2
 D aspartate           5.2         64           3
 E glutamate           6.2         76           3
 F phenylalanine       2.9         35           2
 G glycine             8.0         98           3
 H histidine           2.9         35           2
 I isoleucine          3.6         44           2
 K lysine              3.2         39           2
 L leucine            10.7        131           2
 M methionine          1.8         22           1
 N asparagine          3.3         41           2
 P proline             8.7        107           3
 Q glutamine           5.0         61           2
 R arginine            5.7         70           3
 S serine              5.9         72           3
 T threonine           5.2         64           2
 V valine              6.7         82           3
 W tryptophan          1.1         14           1
 Y tyrosine            2.9         35           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   erbB-2 isoform b 
ERBB2                 1.000   erbB-2 isoform a 
EGFR                  0.457   epidermal growth factor receptor isoform a precursor...
ERBB4                 0.434   v-erb-a erythroblastic leukemia viral oncogene homo...
ERBB4                 0.431   v-erb-a erythroblastic leukemia viral oncogene homolo...
ERBB3                 0.350   erbB-3 isoform 1 precursor 
EGFR                  0.214   epidermal growth factor receptor isoform d precursor...
EGFR                  0.214   epidermal growth factor receptor isoform b precursor...
EGFR                  0.128   epidermal growth factor receptor isoform c precursor...
EPHA2                 0.075   ephrin receptor EphA2 
EPHB4                 0.074   EPH receptor B4 precursor 
EPHB1                 0.073   ephrin receptor EphB1 precursor 
EPHA5                 0.071   ephrin receptor EphA5 isoform b precursor 
PTK2                  0.071   PTK2 protein tyrosine kinase 2 isoform b 
PTK2                  0.071   PTK2 protein tyrosine kinase 2 isoform a 
PTK2B                 0.070   PTK2B protein tyrosine kinase 2 beta isoform a [Homo...
PTK2B                 0.070   PTK2B protein tyrosine kinase 2 beta isoform b [Homo...
PTK2B                 0.070   PTK2B protein tyrosine kinase 2 beta isoform a [Homo...
PTK2B                 0.070   PTK2B protein tyrosine kinase 2 beta isoform a [Homo...
EPHA5                 0.070   ephrin receptor EphA5 isoform a precursor 
EPHB2                 0.070   ephrin receptor EphB2 isoform 2 precursor 
EPHA4                 0.070   ephrin receptor EphA4 
EPHB3                 0.070   ephrin receptor EphB3 precursor 
EPHB2                 0.070   ephrin receptor EphB2 isoform 1 precursor 
TNK2                  0.069   tyrosine kinase, non-receptor, 2 isoform 1 
TNK2                  0.069   tyrosine kinase, non-receptor, 2 isoform 2 
ABL2                  0.069   arg tyrosine kinase isoform c 
ABL2                  0.069   arg tyrosine kinase isoform b 
ABL2                  0.069   arg tyrosine kinase isoform d 
ABL2                  0.069   arg tyrosine kinase isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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