Guide to the Human Genome
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Name: SLC30A5 Sequence: fasta or formatted (118aa) NCBI GI: 13443012
Description:

solute carrier family 30 (zinc transporter), member 5 isoform 2

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [765aa] solute carrier family 30 (zinc transporter), member 5 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2          5           1
 C cysteine            0.8          1           1
 D aspartate           4.2          5           1
 E glutamate           3.4          4           2
 F phenylalanine       8.5         10           2
 G glycine            12.7         15           5
 H histidine           1.7          2           1
 I isoleucine          6.8          8           2
 K lysine             12.7         15           2
 L leucine            12.7         15           2
 M methionine          1.7          2           1
 N asparagine          1.7          2           1
 P proline             5.1          6           1
 Q glutamine           2.5          3           1
 R arginine            2.5          3           1
 S serine              4.2          5           2
 T threonine           4.2          5           1
 V valine              7.6          9           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 30 (zinc transporter), member ... 
SLC30A5               0.756   solute carrier family 30 (zinc transporter), member ...
SIAH2                 0.033   seven in absentia homolog 2 
ATP11C                0.019   ATPase, class VI, type 11C isoform b 
ATP11C                0.019   ATPase, class VI, type 11C isoform a 
MAN1A1                0.014   mannosidase, alpha, class 1A, member 1 
CNGA4                 0.009   cyclic nucleotide gated channel alpha 4 
NXN                   0.009   nucleoredoxin 
POU4F1                0.009   POU domain, class 4, transcription factor 1 
ZNF430                0.005   zinc finger protein 430 
LOC100292052          0.005   PREDICTED: similar to hCG1773661 
LOC100292331          0.005   PREDICTED: hypothetical protein 
LOC100287226          0.005   PREDICTED: similar to hCG1773661 
LOC100287226          0.005   PREDICTED: hypothetical protein XP_002343677 
GBX1                  0.005   gastrulation brain homeo box 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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