Guide to the Human Genome
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Search of human proteins with 19923399

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|19923399 Ras-GTPase activating protein SH3 domain-binding
protein 2 isoform a [Homo sapiens]
         (482 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|19923399 Ras-GTPase activating protein SH3 domain-binding pro...   991   0.0  
gi|45359849 Ras-GTPase activating protein SH3 domain-binding pro...   991   0.0  
gi|45359846 Ras-GTPase activating protein SH3 domain-binding pro...   908   0.0  
gi|5031703 Ras-GTPase-activating protein SH3-domain-binding prot...   578   e-165
gi|38327552 Ras-GTPase-activating protein SH3-domain-binding pro...   578   e-165
gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isofor...    68   2e-11
gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform...    68   2e-11
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap...    65   2e-10
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom...    64   3e-10
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom...    64   3e-10
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b...    62   2e-09
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ...    62   2e-09
gi|155030232 proline, glutamic acid and leucine rich protein 1 [...    59   8e-09
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi...    59   8e-09
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ...    59   1e-08
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ...    59   1e-08
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ...    58   2e-08
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ...    58   2e-08
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ...    58   2e-08
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ...    58   2e-08
gi|33356174 pinin, desmosome associated protein [Homo sapiens]         57   5e-08
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ...    56   6e-08
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ...    56   6e-08
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin...    55   1e-07
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]          55   2e-07
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]          55   2e-07
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ...    55   2e-07
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo...    54   2e-07
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         53   7e-07
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc...    52   1e-06

>gi|19923399 Ras-GTPase activating protein SH3 domain-binding
           protein 2 isoform a [Homo sapiens]
          Length = 482

 Score =  991 bits (2561), Expect = 0.0
 Identities = 482/482 (100%), Positives = 482/482 (100%)

Query: 1   MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
           MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND
Sbjct: 1   MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60

Query: 61  IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
           IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV
Sbjct: 61  IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120

Query: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
           PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP
Sbjct: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180

Query: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP 240
           VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP
Sbjct: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP 240

Query: 241 PKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERP 300
           PKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERP
Sbjct: 241 PKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERP 300

Query: 301 GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL 360
           GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL
Sbjct: 301 GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL 360

Query: 361 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG 420
           RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG
Sbjct: 361 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG 420

Query: 421 GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ 480
           GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ
Sbjct: 421 GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ 480

Query: 481 RR 482
           RR
Sbjct: 481 RR 482


>gi|45359849 Ras-GTPase activating protein SH3 domain-binding
           protein 2 isoform a [Homo sapiens]
          Length = 482

 Score =  991 bits (2561), Expect = 0.0
 Identities = 482/482 (100%), Positives = 482/482 (100%)

Query: 1   MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
           MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND
Sbjct: 1   MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60

Query: 61  IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
           IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV
Sbjct: 61  IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120

Query: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
           PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP
Sbjct: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180

Query: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP 240
           VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP
Sbjct: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP 240

Query: 241 PKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERP 300
           PKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERP
Sbjct: 241 PKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERP 300

Query: 301 GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL 360
           GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL
Sbjct: 301 GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL 360

Query: 361 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG 420
           RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG
Sbjct: 361 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG 420

Query: 421 GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ 480
           GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ
Sbjct: 421 GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ 480

Query: 481 RR 482
           RR
Sbjct: 481 RR 482


>gi|45359846 Ras-GTPase activating protein SH3 domain-binding
           protein 2 isoform b [Homo sapiens]
          Length = 449

 Score =  908 bits (2346), Expect = 0.0
 Identities = 449/482 (93%), Positives = 449/482 (93%), Gaps = 33/482 (6%)

Query: 1   MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
           MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND
Sbjct: 1   MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60

Query: 61  IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
           IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV
Sbjct: 61  IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120

Query: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
           PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP
Sbjct: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180

Query: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP 240
           VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP
Sbjct: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEP 240

Query: 241 PKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERP 300
           PK                                 PRVEAKPEVQSQPPRVREQRPRERP
Sbjct: 241 PK---------------------------------PRVEAKPEVQSQPPRVREQRPRERP 267

Query: 301 GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL 360
           GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL
Sbjct: 268 GFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVEL 327

Query: 361 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG 420
           RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG
Sbjct: 328 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG 387

Query: 421 GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ 480
           GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ
Sbjct: 388 GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTGQ 447

Query: 481 RR 482
           RR
Sbjct: 448 RR 449


>gi|5031703 Ras-GTPase-activating protein SH3-domain-binding protein
           [Homo sapiens]
          Length = 466

 Score =  578 bits (1490), Expect = e-165
 Identities = 315/482 (65%), Positives = 366/482 (75%), Gaps = 32/482 (6%)

Query: 1   MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
           MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1   MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 60

Query: 61  IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
           IH KV+S NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q  R+FMQTFVLAPEGSV
Sbjct: 61  IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 120

Query: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
            NKFYVHND+FRY+DEVFG    E  EESE+EV EE EERQ +PE V +++ + +Y+   
Sbjct: 121 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEV-EEPEERQQTPEVVPDDSGT-FYDQAV 178

Query: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEE-------KSTTPPPAEP 233
           V+N +EE LEE   EPEP+PE E + E +    EEK    LEE       KS++P PA+ 
Sbjct: 179 VSNDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADI 238

Query: 234 VSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPH-VKAPVSQPRVEAKPEVQSQPPR-V 291
               QE  + FSWASVTSKNLPPSG V  +GIPPH VK P SQPR E+KPE Q  P R  
Sbjct: 239 AQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQ 298

Query: 292 REQRPRE-RPGFPP-RGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKE 349
           R+QR RE R   PP RGPRP R   EQ D + RR++R+PDSHQLF+GNLPH++D++ELK+
Sbjct: 299 RDQRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKD 358

Query: 350 FFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKT 409
           FF S+GNVVELRIN+   GGKLPNFGFVVFDDSEPVQ++L  +PIMFRGEVRLNVEEKKT
Sbjct: 359 FFQSYGNVVELRINS---GGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKT 415

Query: 410 RAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRG 469
           RAARE        DRRD R   RGPGGPRG +GGGM      RG PPRGGM QK G G G
Sbjct: 416 RAARE-------GDRRDNRL--RGPGGPRGGLGGGM------RG-PPRGGMVQKPGFGVG 459

Query: 470 TG 471
            G
Sbjct: 460 RG 461


>gi|38327552 Ras-GTPase-activating protein SH3-domain-binding
           protein [Homo sapiens]
          Length = 466

 Score =  578 bits (1490), Expect = e-165
 Identities = 315/482 (65%), Positives = 366/482 (75%), Gaps = 32/482 (6%)

Query: 1   MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60
           MVMEKPSPLLVGREFVRQYYTLLN+AP+ LHRFYG+NSSYVHGG+D++GKP +AVYGQ +
Sbjct: 1   MVMEKPSPLLVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKE 60

Query: 61  IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSV 120
           IH KV+S NF+ CHTKIRHVDAHATL+DGVVVQVMGLLSN+ Q  R+FMQTFVLAPEGSV
Sbjct: 61  IHRKVMSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQALRRFMQTFVLAPEGSV 120

Query: 121 PNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHP 180
            NKFYVHND+FRY+DEVFG    E  EESE+EV EE EERQ +PE V +++ + +Y+   
Sbjct: 121 ANKFYVHNDIFRYQDEVFGGFVTEPQEESEEEV-EEPEERQQTPEVVPDDSGT-FYDQAV 178

Query: 181 VTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEE-------KSTTPPPAEP 233
           V+N +EE LEE   EPEP+PE E + E +    EEK    LEE       KS++P PA+ 
Sbjct: 179 VSNDMEEHLEEPVAEPEPDPEPEPEQEPVSEIQEEKPEPVLEETAPEDAQKSSSPAPADI 238

Query: 234 VSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPH-VKAPVSQPRVEAKPEVQSQPPR-V 291
               QE  + FSWASVTSKNLPPSG V  +GIPPH VK P SQPR E+KPE Q  P R  
Sbjct: 239 AQTVQEDLRTFSWASVTSKNLPPSGAVPVTGIPPHVVKVPASQPRPESKPESQIPPQRPQ 298

Query: 292 REQRPRE-RPGFPP-RGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKE 349
           R+QR RE R   PP RGPRP R   EQ D + RR++R+PDSHQLF+GNLPH++D++ELK+
Sbjct: 299 RDQRVREQRINIPPQRGPRPIREAGEQGDIEPRRMVRHPDSHQLFIGNLPHEVDKSELKD 358

Query: 350 FFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKT 409
           FF S+GNVVELRIN+   GGKLPNFGFVVFDDSEPVQ++L  +PIMFRGEVRLNVEEKKT
Sbjct: 359 FFQSYGNVVELRINS---GGKLPNFGFVVFDDSEPVQKVLSNRPIMFRGEVRLNVEEKKT 415

Query: 410 RAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRG 469
           RAARE        DRRD R   RGPGGPRG +GGGM      RG PPRGGM QK G G G
Sbjct: 416 RAARE-------GDRRDNRL--RGPGGPRGGLGGGM------RG-PPRGGMVQKPGFGVG 459

Query: 470 TG 471
            G
Sbjct: 460 RG 461


>gi|14043072 heterogeneous nuclear ribonucleoprotein A2/B1 isoform
           B1 [Homo sapiens]
          Length = 353

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 54/176 (30%), Positives = 73/176 (41%), Gaps = 31/176 (17%)

Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
           +LFVG +  D +E+ L+++F  +G +  + I T    GK   FGFV FDD +PV +I++ 
Sbjct: 113 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 172

Query: 392 KPIMFRGEVRLNVEEKKTRAARE-------RETRGG----GDDR-----------RDIRR 429
           K     G    N E +K  + +E       R  RGG    GD R            + R 
Sbjct: 173 KYHTINGH---NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRG 229

Query: 430 NDRGPGGPRGI------VGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTG 479
              G G  RG        GGG      G  P   GG     G G G G   G + G
Sbjct: 230 GSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGG 285



 Score = 38.9 bits (89), Expect = 0.010
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
           +LF+G L  +  E  L+ ++  +G + +  +       +   FGFV F     V   + A
Sbjct: 22  KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81

Query: 392 KPIMFRGEVRLNVEEKKTRAARERETRGG 420
           +P    G     V E K   ARE   + G
Sbjct: 82  RPHSIDG----RVVEPKRAVAREESGKPG 106


>gi|4504447 heterogeneous nuclear ribonucleoprotein A2/B1 isoform A2
           [Homo sapiens]
          Length = 341

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 54/176 (30%), Positives = 73/176 (41%), Gaps = 31/176 (17%)

Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
           +LFVG +  D +E+ L+++F  +G +  + I T    GK   FGFV FDD +PV +I++ 
Sbjct: 101 KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQ 160

Query: 392 KPIMFRGEVRLNVEEKKTRAARE-------RETRGG----GDDR-----------RDIRR 429
           K     G    N E +K  + +E       R  RGG    GD R            + R 
Sbjct: 161 KYHTINGH---NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRG 217

Query: 430 NDRGPGGPRGI------VGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRFTG 479
              G G  RG        GGG      G  P   GG     G G G G   G + G
Sbjct: 218 GSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGG 273



 Score = 38.9 bits (89), Expect = 0.010
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
           +LF+G L  +  E  L+ ++  +G + +  +       +   FGFV F     V   + A
Sbjct: 10  KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69

Query: 392 KPIMFRGEVRLNVEEKKTRAARERETRGG 420
           +P    G     V E K   ARE   + G
Sbjct: 70  RPHSIDG----RVVEPKRAVAREESGKPG 94


>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
           sapiens]
          Length = 378

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 5/146 (3%)

Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
           ++FVG +  D +E  L+++F  +G +  + +      GK   F FV FDD + V +I++ 
Sbjct: 127 KIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQ 186

Query: 392 KPIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRD- 450
           K     G    N E KK  + +E ++ G    R     N  G GG  G  GG   R  + 
Sbjct: 187 KYHTINGH---NCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNF 243

Query: 451 -GRGPPPRGGMAQKLGSGRGTGQMEG 475
            GRG    GG   +   G G G   G
Sbjct: 244 GGRGGYGGGGGGSRGSYGGGDGGYNG 269



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 5/119 (4%)

Query: 303 PPRGPRPGRGDMEQNDSDNRRIIRYPDS-HQLFVGNLPHDIDENELKEFFMSFGNVVELR 361
           PP  P+P  G   +   +     + P+   +LF+G L  +  ++ L+E F  +G + +  
Sbjct: 6   PPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCV 65

Query: 362 INTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG 420
           +       +   FGFV +   E V   + A+P    G     V E K   +RE   + G
Sbjct: 66  VMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDG----RVVEPKRAVSREDSVKPG 120


>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
           sapiens]
          Length = 320

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 14/168 (8%)

Query: 314 MEQNDSDNRRIIRYPDSH----QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGG 369
           +E   + +R   + P +H    ++FVG +  D +E+ L+++F  +G +  + I T    G
Sbjct: 84  VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSG 143

Query: 370 KLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRR 429
           K   F FV FDD + V +I+I K    +G    N E +K  A  ++E       +R  RR
Sbjct: 144 KKRGFAFVTFDDHDSVDKIVIQKYHTVKGH---NCEVRK--ALPKQEMASASSSQRG-RR 197

Query: 430 NDRGPGGPRGIVGGGMMRDRDGRGP--PPRGGMAQKLGSGRGTGQMEG 475
                GG RG   GG   D  GRG     RGG     G G   G  +G
Sbjct: 198 GSGNFGGGRGDGFGG--NDNFGRGGNFSGRGGFGGSCGGGGYGGSGDG 243


>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
           sapiens]
          Length = 320

 Score = 63.9 bits (154), Expect = 3e-10
 Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 14/168 (8%)

Query: 314 MEQNDSDNRRIIRYPDSH----QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGG 369
           +E   + +R   + P +H    ++FVG +  D +E+ L+++F  +G +  + I T    G
Sbjct: 84  VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSG 143

Query: 370 KLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRR 429
           K   F FV FDD + V +I+I K    +G    N E +K  A  ++E       +R  RR
Sbjct: 144 KKRGFAFVTFDDHDSVDKIVIQKYHTVKGH---NCEVRK--ALPKQEMASASSSQRG-RR 197

Query: 430 NDRGPGGPRGIVGGGMMRDRDGRGP--PPRGGMAQKLGSGRGTGQMEG 475
                GG RG   GG   D  GRG     RGG     G G   G  +G
Sbjct: 198 GSGNFGGGRGDGFGG--NDNFGRGGNFSGRGGFGGSCGGGGYGGSGDG 243


>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
           [Homo sapiens]
          Length = 372

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 27/182 (14%)

Query: 308 RPGRGD---MEQNDSDNRRIIRYPDSH----QLFVGNLPHDIDENELKEFFMSFGNVVEL 360
           RP + D   +E   + +R   + P +H    ++FVG +  D +E+ L+++F  +G +  +
Sbjct: 75  RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134

Query: 361 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRG---EVR--LNVEEKKTRAARER 415
            I T    GK   F FV FDD + V +I+I K     G   EVR  L+ +E  + ++ +R
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQR 194

Query: 416 ETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGP--PPRGGMAQKLGSGRGTGQM 473
              G G+            GG RG  GG    D  GRG     RGG     G G   G  
Sbjct: 195 GRSGSGNF-----------GGGRG--GGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSG 241

Query: 474 EG 475
           +G
Sbjct: 242 DG 243


>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
           [Homo sapiens]
          Length = 320

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 55/182 (30%), Positives = 83/182 (45%), Gaps = 27/182 (14%)

Query: 308 RPGRGD---MEQNDSDNRRIIRYPDSH----QLFVGNLPHDIDENELKEFFMSFGNVVEL 360
           RP + D   +E   + +R   + P +H    ++FVG +  D +E+ L+++F  +G +  +
Sbjct: 75  RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134

Query: 361 RINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRG---EVR--LNVEEKKTRAARER 415
            I T    GK   F FV FDD + V +I+I K     G   EVR  L+ +E  + ++ +R
Sbjct: 135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQR 194

Query: 416 ETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGP--PPRGGMAQKLGSGRGTGQM 473
              G G+            GG RG  GG    D  GRG     RGG     G G   G  
Sbjct: 195 GRSGSGNF-----------GGGRG--GGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSG 241

Query: 474 EG 475
           +G
Sbjct: 242 DG 243


>gi|155030232 proline, glutamic acid and leucine rich protein 1 [Homo
            sapiens]
          Length = 1130

 Score = 59.3 bits (142), Expect = 8e-09
 Identities = 55/192 (28%), Positives = 77/192 (40%), Gaps = 43/192 (22%)

Query: 142  EPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPE 201
            E E +EE E+E EEE+EE +   E  +E+    + E        EE  EE   E E E E
Sbjct: 888  EEEEEEEEEEEEEEEEEEEEEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEE 947

Query: 202  SETKTEELKPQVEEKNLEELE--------EKSTTPPPAEPVSL--PQEPPK--------- 242
             E + EE     E + +E+LE        E+   PPP  P +L  P+ PPK         
Sbjct: 948  EEDEEEE----EELEEVEDLEFGTAGGEVEEGAPPPPTLPPALPPPESPPKVQPEPEPEP 1003

Query: 243  ----------------AFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQS 286
                            A +  ++  + LP  G V   G  P    P  Q  VE +P   S
Sbjct: 1004 GLLLEVEEPGTEEERGADTAPTLAPEALPSQGEVEREGESP-AAGPPPQELVEEEP---S 1059

Query: 287  QPPRVREQRPRE 298
             PP + E+   +
Sbjct: 1060 APPTLLEEETED 1071



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 44/181 (24%), Positives = 61/181 (33%), Gaps = 35/181 (19%)

Query: 118 GSVPNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYE 177
           G VP   +VH     Y+ E   D E  L+ +S+D V    E   P P P    A      
Sbjct: 758 GRVPRPAFVH-----YDKEEASDVEISLESDSDDSVVIVPEGLPPLPPPPPSGAT----- 807

Query: 178 AHPVTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLP 237
                               P P + T      P V  K  EE EE    P P  P   P
Sbjct: 808 --------------------PPPIAPTGPPTASPPVPAK--EEPEELPAAPGPLPPP--P 843

Query: 238 QEPPKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPR 297
             PP      ++    L P GT    G PP ++  ++   + +  E + +     E+   
Sbjct: 844 PPPPPVPGPVTLPPPQLVPEGTPGGGG-PPALEEDLTVININSSDEEEEEEEEEEEEEEE 902

Query: 298 E 298
           E
Sbjct: 903 E 903



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 8/112 (7%)

Query: 134  EDEVFGDSEPELDEE---SEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLE 190
            E+E   D+ P L  E   S+ EVE E E     P P QE       E       +EE  E
Sbjct: 1015 EEERGADTAPTLAPEALPSQGEVEREGESPAAGPPP-QELVEE---EPSAPPTLLEEETE 1070

Query: 191  ESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPK 242
            + S + +P PE+  + EE++ + E + L+E E+  T    A+ +  P +  K
Sbjct: 1071 DGSDKVQPPPETPAE-EEMETETEAEALQEKEQDDTAAMLADFIDCPPDDEK 1121


>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
           sapiens]
          Length = 305

 Score = 59.3 bits (142), Expect = 8e-09
 Identities = 47/140 (33%), Positives = 61/140 (43%), Gaps = 10/140 (7%)

Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
           +LFVG L  D+ E +L E F  FG V +  I      GK   FGFV F + +   +  + 
Sbjct: 99  KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVV 158

Query: 392 KPIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDG 451
           K    +G     VE KK     +  + GGG       R+ RG  G RG  GG   RD++G
Sbjct: 159 KFHPIQGH---RVEVKKAVPKEDIYSGGGGGG----SRSSRGGRGGRGRGGG---RDQNG 208

Query: 452 RGPPPRGGMAQKLGSGRGTG 471
                 GG     G G G G
Sbjct: 209 LSKGGGGGYNSYGGYGGGGG 228



 Score = 34.7 bits (78), Expect = 0.20
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
           +LF+G L     E+ L+  F +FG + +  +       +   FGFV + + E     + A
Sbjct: 8   KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67

Query: 392 KPIMFRGEVRLNVEEKKTRAARERETRGG 420
            P    G    N  E K   +RE   R G
Sbjct: 68  SPHAVDG----NTVELKRAVSREDSARPG 92


>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
           [Homo sapiens]
          Length = 916

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 78/338 (23%), Positives = 124/338 (36%), Gaps = 32/338 (9%)

Query: 134 EDEVFGDSEP---ELDEESEDEVEEEQEERQPSPEPVQENANSGYYE-AHPVTNGIEEPL 189
           E+EV     P      E  E+E E+E+EE Q   E   E A S   E       G  E  
Sbjct: 503 EEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKE 562

Query: 190 EESSHEPEPEPESETKTEELKPQ--VEEKNLE-------------ELEEKSTTPPPAEPV 234
           E    E E E E+E +  E K +  VEEK+ E             E  EK+ +P P  PV
Sbjct: 563 EGEQEEGETEAEAEGEEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPV 622

Query: 235 SLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQ 294
               + P   S      K+  P   V   G  P  K+PV +   + K  V   P   + +
Sbjct: 623 EEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEE---KGKSPVSKSPVEEKAK 679

Query: 295 RPRERPGFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQL-FVGNLPHDIDENELKEFFMS 353
            P  +        +   G  EQ + + + +   P   ++      P D+ E +  E  + 
Sbjct: 680 SPVPKSPVEEAKSKAEVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKAESPVK 739

Query: 354 FGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAAR 413
              V E+   TK V   L        ++ +P+Q+    +     G       +K  + +R
Sbjct: 740 EEAVAEVVTITKSVKVHLEK---ETKEEGKPLQQEKEKEKAGGEGGSEEEGSDKGAKGSR 796

Query: 414 ER------ETRGGGDDRRDIRRNDRGPGGPRGIVGGGM 445
           +       E  G  +  ++ +    G    +G+V  G+
Sbjct: 797 KEDIAVNGEVEGKEEVEQETKEKGSGREEEKGVVTNGL 834


>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
           [Homo sapiens]
          Length = 540

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 78/338 (23%), Positives = 124/338 (36%), Gaps = 32/338 (9%)

Query: 134 EDEVFGDSEP---ELDEESEDEVEEEQEERQPSPEPVQENANSGYYE-AHPVTNGIEEPL 189
           E+EV     P      E  E+E E+E+EE Q   E   E A S   E       G  E  
Sbjct: 127 EEEVAAKKSPVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKE 186

Query: 190 EESSHEPEPEPESETKTEELKPQ--VEEKNLE-------------ELEEKSTTPPPAEPV 234
           E    E E E E+E +  E K +  VEEK+ E             E  EK+ +P P  PV
Sbjct: 187 EGEQEEGETEAEAEGEEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPV 246

Query: 235 SLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQ 294
               + P   S      K+  P   V   G  P  K+PV +   + K  V   P   + +
Sbjct: 247 EEKGKSPVPKSPVEEKGKSPVPKSPVEEKGKSPVPKSPVEE---KGKSPVSKSPVEEKAK 303

Query: 295 RPRERPGFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQL-FVGNLPHDIDENELKEFFMS 353
            P  +        +   G  EQ + + + +   P   ++      P D+ E +  E  + 
Sbjct: 304 SPVPKSPVEEAKSKAEVGKGEQKEEEEKEVKEAPKEEKVEKKEEKPKDVPEKKKAESPVK 363

Query: 354 FGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAAR 413
              V E+   TK V   L        ++ +P+Q+    +     G       +K  + +R
Sbjct: 364 EEAVAEVVTITKSVKVHLEK---ETKEEGKPLQQEKEKEKAGGEGGSEEEGSDKGAKGSR 420

Query: 414 ER------ETRGGGDDRRDIRRNDRGPGGPRGIVGGGM 445
           +       E  G  +  ++ +    G    +G+V  G+
Sbjct: 421 KEDIAVNGEVEGKEEVEQETKEKGSGREEEKGVVTNGL 458


>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
           [Homo sapiens]
          Length = 336

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 329 DSHQLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRI 388
           D  ++F+G L  D  + +LK++F  FG VV+  +    + G+   FGFV+F +SE V ++
Sbjct: 76  DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 135

Query: 389 LIAKPIMFRGEVRLNVEEKKTRAARERE 416
           +  K     G+V   ++ K+ +A + +E
Sbjct: 136 MDQKEHKLNGKV---IDPKRAKAMKTKE 160



 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 9/108 (8%)

Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
           ++FVG L  D  E +++E+F  FG V  + +       K   F F+ F + EPV++I+  
Sbjct: 164 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 223

Query: 392 K---PIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPGG 436
           K     + + E+++ + +++ +  ++  +RGG   R       RG GG
Sbjct: 224 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRA------RGRGG 265


>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
           [Homo sapiens]
          Length = 287

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 329 DSHQLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRI 388
           D  ++F+G L  D  + +LK++F  FG VV+  +    + G+   FGFV+F +SE V ++
Sbjct: 76  DEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV 135

Query: 389 LIAKPIMFRGEVRLNVEEKKTRAARERE 416
           +  K     G+V   ++ K+ +A + +E
Sbjct: 136 MDQKEHKLNGKV---IDPKRAKAMKTKE 160



 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 3/107 (2%)

Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
           ++FVG L  D  E +++E+F  FG V  + +       K   F F+ F + EPV++I+  
Sbjct: 164 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 223

Query: 392 K---PIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPG 435
           K     + + E+++ + +++ +  ++  +RGG   R   R  D+  G
Sbjct: 224 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGDQQSG 270


>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
           [Homo sapiens]
          Length = 285

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 8/112 (7%)

Query: 303 PPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVELRI 362
           PP G + G    + N S N       D+ ++FVG L  D  + +LK++F  FG VV+  I
Sbjct: 47  PPSGNQNGAEGDQINASKNEE-----DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTI 101

Query: 363 NTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARE 414
                 G+   FGF++F D+  V+++L  K     G V   ++ KK  A ++
Sbjct: 102 KMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRV---IDPKKAMAMKK 150



 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 7/129 (5%)

Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
           ++FVG L  +  E +++E+F  FG +  + +       K   F F+ F + EPV+++L  
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214

Query: 392 KPIMFRG-EVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRD 450
           K     G +  + V + K    +++   GG  +R    R +RG GG  G  GGG      
Sbjct: 215 KFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNR---NRGNRGSGGGGG--GGGQGSTNY 269

Query: 451 GRGPPPRGG 459
           G+    RGG
Sbjct: 270 GKS-QRRGG 277


>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
           [Homo sapiens]
          Length = 332

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 8/112 (7%)

Query: 303 PPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVELRI 362
           PP G + G    + N S N       D+ ++FVG L  D  + +LK++F  FG VV+  I
Sbjct: 47  PPSGNQNGAEGDQINASKNEE-----DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTI 101

Query: 363 NTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARE 414
                 G+   FGF++F D+  V+++L  K     G V   ++ KK  A ++
Sbjct: 102 KMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRV---IDPKKAMAMKK 150



 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 7/142 (4%)

Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
           ++FVG L  +  E +++E+F  FG +  + +       K   F F+ F + EPV+++L  
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLEK 214

Query: 392 KPIMFRG-EVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRD-R 449
           K     G +  + V + K    +++   GG  +R    R +RG GG  G  GGG  +   
Sbjct: 215 KFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNR---NRGNRGSGGGGG--GGGQSQSWN 269

Query: 450 DGRGPPPRGGMAQKLGSGRGTG 471
            G G     G   + G G G G
Sbjct: 270 QGYGNYWNQGYGYQQGYGPGYG 291


>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
          Length = 717

 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 71/253 (28%), Positives = 99/253 (39%), Gaps = 39/253 (15%)

Query: 74  HTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFYVHNDMFRY 133
           H  +R+ +  A   +G V Q    L  +G            A E        VH+D  + 
Sbjct: 295 HQVVRNEEQKAEQEEGKVAQREEELEETGNQHNDV--EIEEAGEEEEKEIAIVHSDAEKE 352

Query: 134 EDEVFGDSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHPV-------TNGIE 186
           ++E     E E+  E E EV E ++++   PE V +         H +       TN +E
Sbjct: 353 QEEEEQKQEMEVKMEEETEVRESEKQQDSQPEEVMDVLEMVENVKHVIADQEVMETNRVE 412

Query: 187 --EPLE-ESSHEPEPEPESETKTEE----LKPQVE-------EKNLEELEEKSTTPPPAE 232
             EP E E+S E EPE E E + ++    L P  E       EK  EE EEK + P P E
Sbjct: 413 SVEPSENEASKELEPEMEFEIEPDKECKSLSPGKENVSALDMEKESEEKEEKESEPQP-E 471

Query: 233 PVSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVR 292
           PV+ PQ   +             P   + S   P     P SQP   +   +Q  P   +
Sbjct: 472 PVAQPQPQSQ-------------PQLQLQSQSQPVLQSQPPSQPEDLSLAVLQPTPQVTQ 518

Query: 293 EQRP--RERPGFP 303
           EQ     ER  FP
Sbjct: 519 EQGHLLPERKDFP 531


>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
           [Homo sapiens]
          Length = 355

 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
           ++F+G L  D  + +LK++F  FG VV+  +    + G+   FGFV+F +SE V +++  
Sbjct: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157

Query: 392 KPIMFRGEVRLNVEEKKTRAARERE 416
           K     G+V   ++ K+ +A + +E
Sbjct: 158 KEHKLNGKV---IDPKRAKAMKTKE 179



 Score = 46.2 bits (108), Expect = 7e-05
 Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 9/108 (8%)

Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
           ++FVG L  D  E +++E+F  FG V  + +       K   F F+ F + EPV++I+  
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242

Query: 392 K---PIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPGG 436
           K     + + E+++ + +++ +  ++  +RGG   R       RG GG
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRA------RGRGG 284


>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
           [Homo sapiens]
          Length = 306

 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 3/85 (3%)

Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
           ++F+G L  D  + +LK++F  FG VV+  +    + G+   FGFV+F +SE V +++  
Sbjct: 98  KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157

Query: 392 KPIMFRGEVRLNVEEKKTRAARERE 416
           K     G+V   ++ K+ +A + +E
Sbjct: 158 KEHKLNGKV---IDPKRAKAMKTKE 179



 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 3/107 (2%)

Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
           ++FVG L  D  E +++E+F  FG V  + +       K   F F+ F + EPV++I+  
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242

Query: 392 K---PIMFRGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPG 435
           K     + + E+++ + +++ +  ++  +RGG   R   R  D+  G
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGDQQSG 289


>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
           tract binding protein associated) [Homo sapiens]
          Length = 707

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 57/172 (33%), Positives = 73/172 (42%), Gaps = 30/172 (17%)

Query: 226 TTPPPAEPVSLPQEPPKAFSWASVTSKNLP----PSGTVSSSGIPPHVKAPVSQPRVEAK 281
           TTPP A     P  PP A        K  P    P G     G  P     +S P    K
Sbjct: 176 TTPPQAGG---PPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPK 232

Query: 282 PEVQS--QPPRVREQRP----RERPGFPPRGPRPGRGDMEQNDSD----NRRIIRYPDSH 331
           P  +   +P   R+  P    +   G PP GP  GR + + +DS+    N  ++R P   
Sbjct: 233 PPHRGGGEPRGGRQHHPPYHQQHHQGPPPGGPG-GRSEEKISDSEGFKANLSLLRRPGEK 291

Query: 332 ------QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFV 377
                 +LFVGNLP DI E+E K  F  +G   E+ IN KG G     FGF+
Sbjct: 292 TYTQRCRLFVGNLPADITEDEFKRLFAKYGEPGEVFIN-KGKG-----FGFI 337



 Score = 33.1 bits (74), Expect = 0.58
 Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 3/135 (2%)

Query: 90  VVVQVMGLLSNS-GQPERKFMQTFVLAPEGSVPNKFYVHNDMFRYEDEVFGDSEPELDEE 148
           V+V+ +  L +  G PE+   +  +   E   P +F  H   F YE      S  E++++
Sbjct: 445 VIVEPLEQLDDEDGLPEKLAQKNPMYQKERETPPRFAQHGT-FEYEYSQRWKSLDEMEKQ 503

Query: 149 SEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPESETKTEE 208
             ++VE+  ++ +   E   E+A    ++A+ +   +    EE     E   +   K +E
Sbjct: 504 QREQVEKNMKDAKDKLESEMEDAYH-EHQANLLRQDLMRRQEELRRMEELHNQEMQKRKE 562

Query: 209 LKPQVEEKNLEELEE 223
           ++ + EE+     EE
Sbjct: 563 MQLRQEEERRRREEE 577



 Score = 30.8 bits (68), Expect = 2.9
 Identities = 36/152 (23%), Positives = 52/152 (34%), Gaps = 14/152 (9%)

Query: 163 SPEP-VQENANSGYYEAHPVTNGIEEPLEESS-HEPEPEPESETKTEELKPQVEEKNLEE 220
           SP P +  N N G     P  +G + P+     H+ + +P  +    +  P  +     +
Sbjct: 33  SPPPGMGLNQNRGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQ 92

Query: 221 LEEKSTTPPPAEPVSLP---QEPPKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPR 277
             ++   PPP +  S P   Q P  A    S      PP+    SS  PP        P 
Sbjct: 93  PHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSA-----PPA----SSSAPPATPPTSGAPP 143

Query: 278 VEAKPEVQSQPPRVREQRPRERPGFPPRGPRP 309
                   + PP V    P   P  PP    P
Sbjct: 144 GSGPGPTPTPPPAVTSAPPGAPPPTPPSSGVP 175


>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
          Length = 378

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 6/95 (6%)

Query: 293 EQRPRERPGFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFM 352
           + +P    G  P   RP  G  +   SDN +      S+++FVG +PH+  E EL+E+F 
Sbjct: 81  DPKPCTPRGMQPERTRPKEGWQKGPRSDNSK------SNKIFVGGIPHNCGETELREYFK 134

Query: 353 SFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQR 387
            FG V E+ +       +   FGF+ F+D + V +
Sbjct: 135 KFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169



 Score = 38.5 bits (88), Expect = 0.014
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
           +LFVG L     +  L+ +F  +G VV+  I       +   FGFV F D   V  +L +
Sbjct: 11  KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70

Query: 392 KPIMFRGEVRLNVEEK 407
           +P    G    N++ K
Sbjct: 71  RPHTLDGR---NIDPK 83


>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
          Length = 407

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 6/95 (6%)

Query: 293 EQRPRERPGFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEFFM 352
           + +P    G  P   RP  G  +   SDN +      S+++FVG +PH+  E EL+E+F 
Sbjct: 81  DPKPCTPRGMQPERTRPKEGWQKGPRSDNSK------SNKIFVGGIPHNCGETELREYFK 134

Query: 353 SFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQR 387
            FG V E+ +       +   FGF+ F+D + V +
Sbjct: 135 KFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQ 169



 Score = 38.5 bits (88), Expect = 0.014
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
           +LFVG L     +  L+ +F  +G VV+  I       +   FGFV F D   V  +L +
Sbjct: 11  KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70

Query: 392 KPIMFRGEVRLNVEEK 407
           +P    G    N++ K
Sbjct: 71  RPHTLDGR---NIDPK 83


>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
           sapiens]
          Length = 5537

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 53/167 (31%), Positives = 67/167 (40%), Gaps = 12/167 (7%)

Query: 142 EPELDEESED-EVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEP 200
           EP+L   SE   +    EE   SP P + + +    E H      E  L     EP   P
Sbjct: 731 EPQLCPRSEGPHLSPRPEEPHLSPRPEEPHLSPQAEEPHLSPQPEEPCLCAVPEEPHLSP 790

Query: 201 ESETKTEELKPQVEEKNLE-ELEEKSTTPPPAEPVSLPQEPPKAFSWASVTSKNLPPSGT 259
           ++E     L PQ EE +L  + EE   +P P EP   PQ      S  S  S+    S  
Sbjct: 791 QAEGP--HLSPQPEELHLSPQTEEPHLSPVPEEPCLSPQPEE---SHLSPQSEEPCLSPR 845

Query: 260 VSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERPGFPPRG 306
              S + P ++ P   PR E  PE   Q P      P E P FPP G
Sbjct: 846 PEESHLSPELEKPPLSPRPEKPPEEPGQCP-----APEELPLFPPPG 887



 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 56/179 (31%), Positives = 71/179 (39%), Gaps = 23/179 (12%)

Query: 147 EESEDEVEEEQEERQPSPE------PVQENANSGYYEAHPVTNGIEE-----PLEESSHE 195
           EES      E+    P PE      P +E   S   EA  ++  +EE     P EES   
Sbjct: 445 EESPLSPPPEESPTSPPPEASRLSPPPEELPASPLPEALHLSRPLEESPLSPPPEESPLS 504

Query: 196 PEPE--PESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKAFSWASVTSKN 253
           P PE  P S  +   L P  E      LE   + PP A P+S    PP   S  S   + 
Sbjct: 505 PPPESSPFSPLEESPLSPPEESPPSPALETPLSPPPEASPLS----PPFEESPLSPPPEE 560

Query: 254 LPPSGTVSSSGI-PPHVKAPVSQPRVEAKPEVQSQPPRVREQRP--RERPGFPPRGPRP 309
           LP S    +S + PP  ++P+S P  E+     S PP      P   E P  PP    P
Sbjct: 561 LPTSPPPEASRLSPPPEESPMSPPPEESP---MSPPPEASRLFPPFEESPLSPPPEESP 616



 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 44/166 (26%), Positives = 59/166 (35%), Gaps = 13/166 (7%)

Query: 156 EQEERQPSPE--PVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPESETK---TEELK 210
           E+    P PE  P+     +      P  + +  P EES   P PE    +       L 
Sbjct: 604 EESPLSPPPEESPLSPPPEASRLSPPPEDSPMSPPPEESPMSPPPEVSRLSPLPVVSRLS 663

Query: 211 PQVEEKNLEELEEKSTTPPPAE-------PVSLPQEPPKAFSWASVTSKNLPPSGTVSSS 263
           P  EE  L    E+S T PP E       P   P  PP   S AS   ++   S  +  S
Sbjct: 664 PPPEESPLSPPPEESPTSPPPEASRLSPPPEDSPTSPPPEDSPASPPPEDSLMSLPLEES 723

Query: 264 GIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERPGFPPRGPRP 309
            + P  + P   PR E  P +  +P         E P   P+   P
Sbjct: 724 PLLPLPEEPQLCPRSEG-PHLSPRPEEPHLSPRPEEPHLSPQAEEP 768



 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 43/156 (27%), Positives = 54/156 (34%), Gaps = 11/156 (7%)

Query: 156 EQEERQPSPE--PVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPESETKTEELKPQV 213
           E     P PE  P+            PV + +  P EES   P PE ES T      P  
Sbjct: 631 EDSPMSPPPEESPMSPPPEVSRLSPLPVVSRLSPPPEESPLSPPPE-ESPT-----SPPP 684

Query: 214 EEKNLEELEEKSTTPPPAEPVSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPV 273
           E   L    E S T PP  P   P  PP   S  S+  +  P         + P  + P 
Sbjct: 685 EASRLSPPPEDSPTSPP--PEDSPASPPPEDSLMSLPLEESPLLPLPEEPQLCPRSEGPH 742

Query: 274 SQPRVEAKPEVQSQPPRVREQRPRERPGFPPRGPRP 309
             PR E +P +  +P         E P   P+   P
Sbjct: 743 LSPRPE-EPHLSPRPEEPHLSPQAEEPHLSPQPEEP 777



 Score = 38.9 bits (89), Expect = 0.010
 Identities = 48/171 (28%), Positives = 61/171 (35%), Gaps = 35/171 (20%)

Query: 158 EERQPSPE-------PVQENANSGYYEAHPVTNGIEE-----PLEESSHEPEPEPESETK 205
           EE  PSP        P + +  S  +E  P++   EE     P E S   P PE    + 
Sbjct: 524 EESPPSPALETPLSPPPEASPLSPPFEESPLSPPPEELPTSPPPEASRLSPPPEESPMSP 583

Query: 206 TEELKPQVEEKNLEEL----EEKSTTPPPAEPVSLPQEPPKAFSWASVTSKNLPPSGTVS 261
             E  P         L    EE   +PPP E    P  PP   S  S   ++ P S    
Sbjct: 584 PPEESPMSPPPEASRLFPPFEESPLSPPPEES---PLSPPPEASRLSPPPEDSPMS---- 636

Query: 262 SSGIPPHVKAPVSQP----RVEAKPEVQSQPPRVREQ----RPRERPGFPP 304
               PP  ++P+S P    R+   P V    P   E      P E P  PP
Sbjct: 637 ----PPPEESPMSPPPEVSRLSPLPVVSRLSPPPEESPLSPPPEESPTSPP 683



 Score = 38.9 bits (89), Expect = 0.010
 Identities = 49/199 (24%), Positives = 72/199 (36%), Gaps = 29/199 (14%)

Query: 147 EESEDEVEEEQEERQPSPE------PVQENANSGYYEAHPVTNGIEE-----PLEESSHE 195
           EES      E+    P PE      P +++  S   E  P +   E+     PLEES   
Sbjct: 667 EESPLSPPPEESPTSPPPEASRLSPPPEDSPTSPPPEDSPASPPPEDSLMSLPLEESPLL 726

Query: 196 PEPE-PESETKTE--ELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKAFSWASVTSK 252
           P PE P+   ++E   L P+ EE +L    E+    P AE   L  +P +    A     
Sbjct: 727 PLPEEPQLCPRSEGPHLSPRPEEPHLSPRPEEPHLSPQAEEPHLSPQPEEPCLCA----- 781

Query: 253 NLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERPGFPPRGPRPGRG 312
            +P           PH+      P +  +PE     P+  E      P  P   P+P   
Sbjct: 782 -VPEE---------PHLSPQAEGPHLSPQPEELHLSPQTEEPHLSPVPEEPCLSPQPEES 831

Query: 313 DMEQNDSDNRRIIRYPDSH 331
            +     +     R  +SH
Sbjct: 832 HLSPQSEEPCLSPRPEESH 850



 Score = 35.8 bits (81), Expect = 0.089
 Identities = 39/123 (31%), Positives = 53/123 (43%), Gaps = 11/123 (8%)

Query: 187 EPLEESSHEPEPEPESETKTE-ELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKAFS 245
           +PL ++  + EP+ E+    E  L P  EE  L    E+S T PP E   L   PP    
Sbjct: 417 KPLGKAGVQLEPQLEAPLNEEMPLLPPPEESPLSPPPEESPTSPPPEASRL--SPPPEEL 474

Query: 246 WASVTSKNLPPSGTVSSSGI-PPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERPGFPP 304
            AS   + L  S  +  S + PP  ++P+S P     PE  S P    E+ P   P   P
Sbjct: 475 PASPLPEALHLSRPLEESPLSPPPEESPLSPP-----PE--SSPFSPLEESPLSPPEESP 527

Query: 305 RGP 307
             P
Sbjct: 528 PSP 530



 Score = 32.0 bits (71), Expect = 1.3
 Identities = 43/175 (24%), Positives = 64/175 (36%), Gaps = 13/175 (7%)

Query: 142 EPELDEESEDE-VEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEP 200
           EP L    E+  +  + EE   SP+  +   +    E+H      + PL     +P  EP
Sbjct: 812 EPHLSPVPEEPCLSPQPEESHLSPQSEEPCLSPRPEESHLSPELEKPPLSPRPEKPPEEP 871

Query: 201 ESETKTEELK--PQVEEKNLEELEEKSTTPPPAEP--VSLPQEPPKAFSWASVTSKNL-- 254
                 EEL   P   E +L  L  +     P EP    LP+E P + S     S  L  
Sbjct: 872 GQCPAPEELPLFPPPGEPSLSPLLGEPALSEPGEPPLSPLPEELPLSPSGEPSLSPQLMP 931

Query: 255 -----PPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERPGFPP 304
                PP   + ++  PP + +P+ +       +  S P         E P  PP
Sbjct: 932 PDPLPPPLSPIITAAAPPAL-SPLGELEYPFGAKGDSDPESPLAAPILETPISPP 985



 Score = 32.0 bits (71), Expect = 1.3
 Identities = 44/178 (24%), Positives = 60/178 (33%), Gaps = 35/178 (19%)

Query: 142 EPELDEESEDE-VEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEP 200
           EP L  + E+  +  + EE   SP P +E+  S   E  P++   E+P EE    P PE 
Sbjct: 821 EPCLSPQPEESHLSPQSEEPCLSPRP-EESHLSPELEKPPLSPRPEKPPEEPGQCPAPEE 879

Query: 201 E--------------------SETKTEELKPQVEEKNLEELEEKSTTP---------PPA 231
                                SE     L P  EE  L    E S +P         PP 
Sbjct: 880 LPLFPPPGEPSLSPLLGEPALSEPGEPPLSPLPEELPLSPSGEPSLSPQLMPPDPLPPPL 939

Query: 232 EPVSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPP 289
            P+     PP      S   +   P G    S     + AP+ +  +   PE     P
Sbjct: 940 SPIITAAAPPA----LSPLGELEYPFGAKGDSDPESPLAAPILETPISPPPEANCTDP 993



 Score = 29.3 bits (64), Expect = 8.3
 Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 6/118 (5%)

Query: 196  PEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKAFSWASVTSKNLP 255
            P+    S  + ++L+  + ++ L++ +    TPP  EP      P +            P
Sbjct: 4209 PQLRHLSPQQQQQLQALLMQRQLQQSQAVRQTPPYQEP-GTQTSPLQGLLGCQPQLGGFP 4267

Query: 256  --PSGTVSSSGIPPHVKAPVSQPRVEAKPEVQSQPPRVREQRPRERPGFPPRGPRPGR 311
               +G +   G  P  + P   PR+ A P   S  P +    P   P  P    RP +
Sbjct: 4268 GPQTGPLQELGAGPRPQGP---PRLPAPPGALSTGPVLGPVHPTPPPSSPQEPKRPSQ 4322


>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
           sapiens]
          Length = 420

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 329 DSHQLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRI 388
           D  ++F+G L  D  + +L E+   FG VV+  I T  V G+   FGFV+F D+  V ++
Sbjct: 146 DDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV 205

Query: 389 LIAKPIMFRGEVRLNVEEKKTRAARERE 416
           L  K     G++   ++ K+ +A + +E
Sbjct: 206 LELKEHKLDGKL---IDPKRAKALKGKE 230



 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 36/144 (25%)

Query: 332 QLFVGNLPHDIDENELKEFFMSFGNV--VELRINTKGVGGKLPNFGFVVFDDSEPVQRIL 389
           ++FVG L  D  E ++KE+F +FG +  +EL ++TK    +   F F+ + D EPV+++L
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTK--TNERRGFCFITYTDEEPVKKLL 291

Query: 390 IAKPIMF-RGEVRLNVEEKKTRAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRD 448
            ++      G+  + V + K    ++++ + GG                RG   GG    
Sbjct: 292 ESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGG----------------RGAAAGG---- 331

Query: 449 RDGRGPPPRGGMAQKLGSGRGTGQ 472
                   RGG     G GRG GQ
Sbjct: 332 --------RGGTR---GRGRGQGQ 344


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 52.8 bits (125), Expect = 7e-07
 Identities = 57/202 (28%), Positives = 82/202 (40%), Gaps = 18/202 (8%)

Query: 140 DSEPELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEES------S 193
           D + +  ++ E E   E+ ER  SP   +  + S    + PV    +     S      S
Sbjct: 148 DEDKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSSPVRRERKRSHSRSPRHRTKS 207

Query: 194 HEPEPEPESETKTEEL-KPQVEEKNLEELEEKSTTP----PPAEPVSLPQE--PPKAFSW 246
             P P PE + KT EL +P V+ K     E  ST+     P  EP+  P+E  P K    
Sbjct: 208 RSPSPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKK 267

Query: 247 ASVTSKNLPPSGTVSSSGIPPHVKAPV-SQPRVEAKPEVQSQPPRVR---EQRPRERPGF 302
                K  P S + S S      ++P  ++PR   +   +S  PR R    +RP  R   
Sbjct: 268 EKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRT 327

Query: 303 PPRG-PRPGRGDMEQNDSDNRR 323
           PPR  P P R    ++    RR
Sbjct: 328 PPRRMPPPPRHRRSRSPVRRRR 349



 Score = 38.1 bits (87), Expect = 0.018
 Identities = 39/172 (22%), Positives = 60/172 (34%), Gaps = 6/172 (3%)

Query: 143 PELDEESEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPES 202
           P     S       +  R P+P P +   +       P       P++   + P P P+ 
Sbjct: 554 PTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRR-YSPSPPPKR 612

Query: 203 ETKTEELKPQVEEKNLEELEEKSTTPPPAEPVSLPQEPPKAFSWASVTSKNLPPSGTVSS 262
            T +    P+         + + +  PP +  S P    ++ S +S   K   PS +   
Sbjct: 613 RTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTRE 672

Query: 263 SGIPPHVKAPVSQPRVEAKPEVQSQPPRVR---EQRPRERPGFPPRGPRPGR 311
           +  P   K     PR  A P+  S PP VR      P+ R   P    RP R
Sbjct: 673 ARSPQPNKRHSPSPRPRA-PQTSSSPPPVRRGASSSPQRRQS-PSPSTRPIR 722



 Score = 33.1 bits (74), Expect = 0.58
 Identities = 47/222 (21%), Positives = 72/222 (32%), Gaps = 48/222 (21%)

Query: 149 SEDEVEEEQEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEP-EPEPESETKTE 207
           S     E++E+    PEP  +       EA   ++ ++ P  E   EP EP PE  +K E
Sbjct: 209 SPSPAPEKKEKTPELPEPSVKVKEPSVQEATSTSDILKVPKPEPIPEPKEPSPEKNSKKE 268

Query: 208 ELKPQVEEKNLEELEEKSTT---------------------------------------- 227
           + K +   ++    + +S T                                        
Sbjct: 269 KEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTP 328

Query: 228 -----PPPAEPVSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVEAKP 282
                PPP    S      +  S AS++  +   S + S S      K   S PR   + 
Sbjct: 329 PRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRL 388

Query: 283 EVQSQPPRVREQRPRERPGFPPRGPRPGRGDMEQNDSDNRRI 324
              + PPR R  RP   P  PP   R      + N +   R+
Sbjct: 389 SPSASPPR-RRHRP-SPPATPPPKTRHSPTPQQSNRTRKSRV 428



 Score = 33.1 bits (74), Expect = 0.58
 Identities = 33/153 (21%), Positives = 53/153 (34%), Gaps = 12/153 (7%)

Query: 157 QEERQPSPEPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEK 216
           Q    PSP P +  A+         +     P    SH P P+  S   T+   P +  K
Sbjct: 601 QRRYSPSPPPKRRTASPPPPPKRRASPS-PPPKRRVSHSPPPKQRSSPVTKRRSPSLSSK 659

Query: 217 NLEELEEKSTTPPPAEPVSLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQP 276
           +      K ++P  +   +   +P K  S       +  P    +SS  PP  +   S P
Sbjct: 660 H-----RKGSSPSRSTREARSPQPNKRHS------PSPRPRAPQTSSSPPPVRRGASSSP 708

Query: 277 RVEAKPEVQSQPPRVREQRPRERPGFPPRGPRP 309
           +    P   ++P R   + P  +       P P
Sbjct: 709 QRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSP 741


>gi|169203146 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein A1-like [Homo sapiens]
          Length = 321

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 18/139 (12%)

Query: 320 DNRRIIRYPDSHQLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVF 379
           D++R   Y    ++FVG +  D +E+ L++++  +G    + I T    GK  +F FV F
Sbjct: 94  DSQRPGAYLTVKKIFVGGIKEDTEEHPLRDYYEQYGKTEVIEIMTDQGSGKKRDFAFVTF 153

Query: 380 DDSEPVQRILIAKPIMFRG---EVRLNVEEKKTRAA--RERETRGGGDDRRDIRRNDRGP 434
           D+ +   +I+I K  +  G   EVR  + ++K  +A   +R   G G+            
Sbjct: 154 DNHDSTDKIVIQKYHIVNGHNCEVRKALSKQKMASAPSSQRSRSGSGNF----------- 202

Query: 435 GGPRGIVGGGMMRDRDGRG 453
           GG RG  GG    D  G G
Sbjct: 203 GGGRG--GGFSGNDNFGHG 219



 Score = 33.9 bits (76), Expect = 0.34
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 332 QLFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIA 391
           +LF+G L  +  +  L+     +G + E  +       +   FGFV +   E V   + A
Sbjct: 15  KLFIGGLRFETSDESLRSHSEQWGTLTECVVMRDPNTNRSRGFGFVPYVTVEEVDAAMNA 74

Query: 392 KPIMFRGEVRLNVEEKKTRAARERETRGG 420
           +P    G     V E KT  +RE   R G
Sbjct: 75  RPHKMGG----RVVEPKTAVSREDSQRPG 99


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,926,229
Number of Sequences: 37866
Number of extensions: 1611320
Number of successful extensions: 19894
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 1204
Number of HSP's that attempted gapping in prelim test: 10818
Number of HSP's gapped (non-prelim): 6329
length of query: 482
length of database: 18,247,518
effective HSP length: 106
effective length of query: 376
effective length of database: 14,233,722
effective search space: 5351879472
effective search space used: 5351879472
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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