Guide to the Human Genome
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Name: ST13 Sequence: fasta or formatted (369aa) NCBI GI: 19923193
Description:

heat shock 70kD protein binding protein

Referenced in:

Heat-Shock Proteins and Chaperonins
Tetratricopeptide Domains

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         40           2
 C cysteine            0.8          3           1
 D aspartate           6.8         25           1
 E glutamate          12.2         45           3
 F phenylalanine       2.4          9           1
 G glycine             6.8         25           3
 H histidine           1.6          6           1
 I isoleucine          4.1         15           1
 K lysine              8.9         33           2
 L leucine             6.2         23           2
 M methionine          4.9         18           2
 N asparagine          3.8         14           1
 P proline             6.5         24           2
 Q glutamine           4.6         17           1
 R arginine            6.2         23           2
 S serine              4.6         17           2
 T threonine           1.6          6           1
 V valine              4.6         17           1
 W tryptophan          0.8          3           1
 Y tyrosine            1.6          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heat shock 70kD protein binding protein 
LOC100292601          0.246   PREDICTED: similar to heat shock 70kD protein bindi...
LOC100289933          0.246   PREDICTED: hypothetical protein XP_002346852 
LOC100289653          0.246   PREDICTED: hypothetical protein XP_002342689 
LOC100292220          0.116   PREDICTED: similar to heat shock 70kD protein bindi...
SPAG1                 0.070   sperm associated antigen 1 
SPAG1                 0.070   sperm associated antigen 1 
TOMM70A               0.052   translocase of outer mitochondrial membrane 70 homol...
SGTB                  0.049   small glutamine-rich tetratricopeptide repeat (TPR)-...
RPAP3                 0.045   RNA polymerase II associated protein 3 isoform 2 [H...
RPAP3                 0.045   RNA polymerase II associated protein 3 isoform 1 [H...
STUB1                 0.045   STIP1 homology and U-box containing protein 1 
TTC1                  0.045   tetratricopeptide repeat domain 1 
STIP1                 0.042   stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi...
RPAP3                 0.041   RNA polymerase II associated protein 3 isoform 3 [H...
PPP5C                 0.041   protein phosphatase 5, catalytic subunit 
DNAJC7                0.039   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
DNAJC7                0.039   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
SGTA                  0.038   small glutamine-rich tetratricopeptide 
TTC28                 0.036   tetratricopeptide repeat domain 28 
KIF21A                0.034   kinesin family member 21A 
TTC12                 0.034   tetratricopeptide repeat domain 12 
NEFM                  0.031   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.031   neurofilament, medium polypeptide 150kDa isoform 2 ...
FAM184B               0.028   hypothetical protein LOC27146 
SLTM                  0.028   modulator of estrogen induced transcription isoform ...
SLTM                  0.028   modulator of estrogen induced transcription isoform ...
DNAJC3                0.027   DnaJ (Hsp40) homolog, subfamily C, member 3 
OGT                   0.027   O-linked GlcNAc transferase isoform 2 
OGT                   0.027   O-linked GlcNAc transferase isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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