Guide to the Human Genome
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Name: LOC100292220 Sequence: fasta or formatted (183aa) NCBI GI: 239753617
Description:

PREDICTED: similar to heat shock 70kD protein binding protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         17           2
 C cysteine            1.1          2           1
 D aspartate           3.3          6           2
 E glutamate           4.9          9           2
 F phenylalanine       2.7          5           1
 G glycine             7.1         13           2
 H histidine           2.2          4           2
 I isoleucine          3.8          7           1
 K lysine              4.9          9           1
 L leucine            10.4         19           2
 M methionine          2.7          5           1
 N asparagine          3.8          7           1
 P proline             8.2         15           2
 Q glutamine           3.8          7           1
 R arginine            7.7         14           2
 S serine             10.4         19           3
 T threonine           2.7          5           1
 V valine              7.1         13           1
 W tryptophan          0.5          1           1
 Y tyrosine            3.3          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to heat shock 70kD protein bindi... 
ST13                  0.243   heat shock 70kD protein binding protein 
UBAC1                 0.038   ubiquitin associated domain containing 1 
STIP1                 0.023   stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi...
LOC100133305          0.015   PREDICTED: hypothetical protein 
LOC100133305          0.015   PREDICTED: hypothetical protein 
PUS3                  0.012   pseudouridylate synthase 3 
LOC100131973          0.009   PREDICTED: hypothetical protein 
CASC5                 0.009   cancer susceptibility candidate 5 isoform 1 
C9orf131              0.009   hypothetical protein LOC138724 isoform D 
C9orf131              0.009   hypothetical protein LOC138724 isoform C 
C9orf131              0.009   hypothetical protein LOC138724 isoform B 
C9orf131              0.009   hypothetical protein LOC138724 isoform A 
CPT1A                 0.006   carnitine palmitoyltransferase 1A liver isoform 2 [H...
CPT1A                 0.006   carnitine palmitoyltransferase 1A liver isoform 1 [H...
ZFPM1                 0.006   zinc finger protein, multitype 1 
PIK3C2B               0.006   phosphoinositide-3-kinase, class 2 beta polypeptide...
RICS                  0.006   Rho GTPase-activating protein isoform 1 
RICS                  0.006   Rho GTPase-activating protein isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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