Guide to the Human Genome
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Name: STUB1 Sequence: fasta or formatted (303aa) NCBI GI: 56181387
Description:

STIP1 homology and U-box containing protein 1

Referenced in:

Heat-Shock Proteins and Chaperonins
Tetratricopeptide Domains

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         27           3
 C cysteine            2.6          8           1
 D aspartate           6.3         19           2
 E glutamate          11.6         35           2
 F phenylalanine       2.6          8           2
 G glycine             5.9         18           3
 H histidine           3.0          9           1
 I isoleucine          5.3         16           1
 K lysine              6.6         20           3
 L leucine             8.6         26           1
 M methionine          2.3          7           1
 N asparagine          3.0          9           1
 P proline             3.6         11           1
 Q glutamine           5.9         18           2
 R arginine            8.3         25           2
 S serine              5.6         17           1
 T threonine           2.0          6           1
 V valine              3.3         10           1
 W tryptophan          0.7          2           1
 Y tyrosine            4.0         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   STIP1 homology and U-box containing protein 1 
SGTB                  0.084   small glutamine-rich tetratricopeptide repeat (TPR)-...
UNC45A                0.074   smooth muscle cell associated protein-1 isoform 2 [H...
TOMM34                0.073   translocase of outer mitochondrial membrane 34 [Homo...
TTC12                 0.071   tetratricopeptide repeat domain 12 
SGTA                  0.071   small glutamine-rich tetratricopeptide 
WDTC1                 0.069   WD and tetratricopeptide repeats 1 
STIP1                 0.066   stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi...
TOMM70A               0.066   translocase of outer mitochondrial membrane 70 homol...
UNC45A                0.066   smooth muscle cell associated protein-1 isoform 3 [H...
SPAG1                 0.066   sperm associated antigen 1 
SPAG1                 0.066   sperm associated antigen 1 
PPP5C                 0.066   protein phosphatase 5, catalytic subunit 
DNAJC7                0.064   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
RPAP3                 0.057   RNA polymerase II associated protein 3 isoform 2 [H...
RPAP3                 0.057   RNA polymerase II associated protein 3 isoform 1 [H...
LONRF3                0.057   LON peptidase N-terminal domain and ring finger 3 is...
RPAP3                 0.057   RNA polymerase II associated protein 3 isoform 3 [H...
DNAJC7                0.057   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
UNC45B                0.056   cardiomyopathy associated 4 isoform 2 
UNC45B                0.056   cardiomyopathy associated 4 isoform 1 
DYX1C1                0.054   dyslexia susceptibility 1 candidate 1 isoform a [Hom...
ST13                  0.054   heat shock 70kD protein binding protein 
FKBP5                 0.051   FK506 binding protein 5 isoform 1 
FKBP5                 0.051   FK506 binding protein 5 isoform 1 
FKBP5                 0.051   FK506 binding protein 5 isoform 1 
FKBP4                 0.047   FK506 binding protein 52 
LONRF3                0.046   LON peptidase N-terminal domain and ring finger 3 is...
TTC3                  0.044   tetratricopeptide repeat domain 3 
TTC3                  0.044   tetratricopeptide repeat domain 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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