Guide to the Human Genome
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Name: LOC100289933 Sequence: fasta or formatted (204aa) NCBI GI: 239748906
Description:

PREDICTED: hypothetical protein XP_002346852

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         10           1
 C cysteine            0.5          1           1
 D aspartate           5.4         11           1
 E glutamate          12.3         25           2
 F phenylalanine       3.4          7           1
 G glycine             3.9          8           2
 H histidine           1.0          2           1
 I isoleucine          4.4          9           2
 K lysine             10.8         22           3
 L leucine             7.4         15           1
 M methionine          4.4          9           1
 N asparagine          3.4          7           1
 P proline             6.4         13           2
 Q glutamine           5.4         11           2
 R arginine            5.9         12           2
 S serine              8.3         17           2
 T threonine           5.4         11           1
 V valine              4.9         10           1
 W tryptophan          0.5          1           1
 Y tyrosine            1.5          3           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346852 
LOC100292601          1.000   PREDICTED: similar to heat shock 70kD protein bindi...
LOC100289653          0.995   PREDICTED: hypothetical protein XP_002342689 
ST13                  0.463   heat shock 70kD protein binding protein 
TEC                   0.171   tec protein tyrosine kinase 
BMX                   0.100   BMX non-receptor tyrosine kinase 
BMX                   0.100   BMX non-receptor tyrosine kinase 
BTK                   0.089   Bruton agammaglobulinemia tyrosine kinase 
ITK                   0.084   IL2-inducible T-cell kinase 
AP3B1                 0.039   adaptor-related protein complex 3, beta 1 subunit [H...
RASA3                 0.037   RAS p21 protein activator 3 
DAXX                  0.034   death-domain associated protein isoform a 
DAXX                  0.034   death-domain associated protein isoform a 
DAXX                  0.034   death-domain associated protein isoform b 
NCL                   0.032   nucleolin 
C6orf10               0.032   chromosome 6 open reading frame 10 
RP1L1                 0.029   retinitis pigmentosa 1-like 1 
ANP32B                0.029   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
GON4L                 0.026   gon-4-like isoform a 
CTCF                  0.026   CCCTC-binding factor 
TXNDC2                0.026   thioredoxin domain-containing 2 isoform 1 
TXNDC2                0.026   thioredoxin domain-containing 2 isoform 2 
TXNDC2                0.026   thioredoxin domain-containing 2 isoform 1 
MYST4                 0.026   MYST histone acetyltransferase (monocytic leukemia)...
CNGB1                 0.024   cyclic nucleotide gated channel beta 1 isoform a [H...
TRIM44                0.024   DIPB protein 
NEFL                  0.024   neurofilament, light polypeptide 68kDa 
ARID4B                0.024   AT rich interactive domain 4B isoform 1 
PDAP1                 0.024   PDGFA associated protein 1 
DDX21                 0.024   DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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