Guide to the Human Genome
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Name: TTC1 Sequence: fasta or formatted (292aa) NCBI GI: 4507711
Description:

tetratricopeptide repeat domain 1

Referenced in:

Tetratricopeptide Domains

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         17           3
 C cysteine            2.7          8           1
 D aspartate           6.8         20           2
 E glutamate          15.1         44           3
 F phenylalanine       2.7          8           1
 G glycine             4.1         12           1
 H histidine           1.4          4           1
 I isoleucine          4.1         12           1
 K lysine              8.9         26           2
 L leucine             8.9         26           2
 M methionine          2.4          7           1
 N asparagine          6.5         19           3
 P proline             4.1         12           2
 Q glutamine           5.1         15           1
 R arginine            5.8         17           2
 S serine              8.6         25           2
 T threonine           2.1          6           1
 V valine              2.4          7           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.4          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tetratricopeptide repeat domain 1 
SPAG1                 0.114   sperm associated antigen 1 
SPAG1                 0.114   sperm associated antigen 1 
TOMM34                0.105   translocase of outer mitochondrial membrane 34 [Homo...
TOMM70A               0.101   translocase of outer mitochondrial membrane 70 homol...
TTC12                 0.094   tetratricopeptide repeat domain 12 
UNC45B                0.094   cardiomyopathy associated 4 isoform 2 
UNC45B                0.094   cardiomyopathy associated 4 isoform 1 
RPAP3                 0.093   RNA polymerase II associated protein 3 isoform 2 [H...
RPAP3                 0.093   RNA polymerase II associated protein 3 isoform 1 [H...
DNAJC7                0.089   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
DNAJC7                0.089   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
UNC45A                0.089   smooth muscle cell associated protein-1 isoform 3 [H...
UNC45A                0.089   smooth muscle cell associated protein-1 isoform 2 [H...
STIP1                 0.082   stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi...
RPAP3                 0.080   RNA polymerase II associated protein 3 isoform 3 [H...
SGTA                  0.075   small glutamine-rich tetratricopeptide 
PPP5C                 0.071   protein phosphatase 5, catalytic subunit 
SGTB                  0.069   small glutamine-rich tetratricopeptide repeat (TPR)-...
TTC4                  0.066   tetratricopeptide repeat domain 4 
DNAJC3                0.064   DnaJ (Hsp40) homolog, subfamily C, member 3 
FKBPL                 0.059   WAF-1/CIP1 stabilizing protein 39 
FKBP5                 0.057   FK506 binding protein 5 isoform 1 
FKBP5                 0.057   FK506 binding protein 5 isoform 1 
FKBP5                 0.057   FK506 binding protein 5 isoform 1 
ST13                  0.057   heat shock 70kD protein binding protein 
FKBP4                 0.053   FK506 binding protein 52 
FKBP8                 0.053   FK506-binding protein 8 
WDTC1                 0.052   WD and tetratricopeptide repeats 1 
TTC28                 0.048   tetratricopeptide repeat domain 28 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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