Guide to the Human Genome
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Name: RPAP3 Sequence: fasta or formatted (631aa) NCBI GI: 225735593
Description:

RNA polymerase II associated protein 3 isoform 2

Referenced in:

RNA Polymerase and General Transcription Factors

Other entries for this name:
alt prot [665aa] RNA polymerase II associated protein 3 isoform 1
alt prot [506aa] RNA polymerase II associated protein 3 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         55           3
 C cysteine            0.8          5           1
 D aspartate           6.3         40           2
 E glutamate           9.8         62           2
 F phenylalanine       3.6         23           2
 G glycine             3.6         23           2
 H histidine           0.6          4           1
 I isoleucine          5.5         35           2
 K lysine             11.6         73           4
 L leucine             9.0         57           3
 M methionine          1.6         10           1
 N asparagine          5.4         34           2
 P proline             4.3         27           2
 Q glutamine           5.5         35           2
 R arginine            4.8         30           2
 S serine              6.8         43           2
 T threonine           4.4         28           2
 V valine              3.6         23           1
 W tryptophan          0.3          2           1
 Y tyrosine            3.5         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA polymerase II associated protein 3 isoform 2 [H... 
RPAP3                 0.986   RNA polymerase II associated protein 3 isoform 1 [H...
RPAP3                 0.724   RNA polymerase II associated protein 3 isoform 3 [H...
SPAG1                 0.073   sperm associated antigen 1 
SPAG1                 0.073   sperm associated antigen 1 
TOMM34                0.073   translocase of outer mitochondrial membrane 34 [Homo...
STIP1                 0.064   stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi...
SGTB                  0.059   small glutamine-rich tetratricopeptide repeat (TPR)-...
TOMM70A               0.056   translocase of outer mitochondrial membrane 70 homol...
DNAJC7                0.051   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
PPP5C                 0.047   protein phosphatase 5, catalytic subunit 
SGTA                  0.046   small glutamine-rich tetratricopeptide 
TTC12                 0.045   tetratricopeptide repeat domain 12 
TTC1                  0.043   tetratricopeptide repeat domain 1 
FKBP5                 0.042   FK506 binding protein 5 isoform 1 
FKBP5                 0.042   FK506 binding protein 5 isoform 1 
FKBP5                 0.042   FK506 binding protein 5 isoform 1 
DNAJC7                0.041   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
FKBP4                 0.040   FK506 binding protein 52 
TTC28                 0.037   tetratricopeptide repeat domain 28 
UNC45A                0.036   smooth muscle cell associated protein-1 isoform 3 [H...
UNC45A                0.036   smooth muscle cell associated protein-1 isoform 2 [H...
DNAJC3                0.035   DnaJ (Hsp40) homolog, subfamily C, member 3 
UNC45B                0.033   cardiomyopathy associated 4 isoform 2 
UNC45B                0.033   cardiomyopathy associated 4 isoform 1 
DYX1C1                0.031   dyslexia susceptibility 1 candidate 1 isoform a [Hom...
FKBPL                 0.031   WAF-1/CIP1 stabilizing protein 39 
STUB1                 0.028   STIP1 homology and U-box containing protein 1 
TTC6                  0.028   PREDICTED: tetratricopeptide repeat domain 6 
TTC6                  0.028   PREDICTED: tetratricopeptide repeat domain 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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