Guide to the Human Genome
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Name: PPP5C Sequence: fasta or formatted (499aa) NCBI GI: 5453958
Description:

protein phosphatase 5, catalytic subunit

Referenced in:

Serine / Threonine Protein Phosphatases
Tetratricopeptide Domains

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         36           2
 C cysteine            2.0         10           1
 D aspartate           6.2         31           2
 E glutamate           8.0         40           2
 F phenylalanine       4.4         22           1
 G glycine             6.6         33           2
 H histidine           2.6         13           1
 I isoleucine          4.8         24           2
 K lysine              7.8         39           2
 L leucine             8.6         43           2
 M methionine          3.0         15           2
 N asparagine          4.6         23           2
 P proline             4.4         22           2
 Q glutamine           4.2         21           1
 R arginine            4.6         23           2
 S serine              5.0         25           1
 T threonine           4.4         22           2
 V valine              5.4         27           2
 W tryptophan          0.6          3           1
 Y tyrosine            5.4         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein phosphatase 5, catalytic subunit 
PPEF1                 0.213   protein phosphatase with EF hand calcium-binding dom...
PPP2CB                0.210   protein phosphatase 2, catalytic subunit, beta isofo...
PPP2CB                0.210   protein phosphatase 2, catalytic subunit, beta isofor...
PPP2CA                0.206   protein phosphatase 2, catalytic subunit, alpha isofo...
PPEF1                 0.202   protein phosphatase with EF hand calcium-binding dom...
PPP4C                 0.196   protein phosphatase 4, catalytic subunit 
PPP3CB                0.189   protein phosphatase 3, catalytic subunit, beta isof...
PPP3CB                0.189   protein phosphatase 3, catalytic subunit, beta isof...
PPP3CB                0.189   protein phosphatase 3, catalytic subunit, beta isofo...
PPP3CA                0.187   protein phosphatase 3, catalytic subunit, alpha iso...
PPP3CA                0.187   protein phosphatase 3, catalytic subunit, alpha isofo...
PPP1CA                0.185   protein phosphatase 1, catalytic subunit, alpha isof...
PPP1CA                0.185   protein phosphatase 1, catalytic subunit, alpha isofo...
PPP1CC                0.184   protein phosphatase 1, catalytic subunit, gamma isofo...
PPP3CC                0.184   protein phosphatase 3, catalytic subunit, gamma [Hom...
PPP1CB                0.182   protein phosphatase 1, catalytic subunit, beta isofo...
PPP1CB                0.182   protein phosphatase 1, catalytic subunit, beta isofor...
PPP6C                 0.181   protein phosphatase 6, catalytic subunit isoform a ...
PPP6C                 0.181   protein phosphatase 6, catalytic subunit isoform b [H...
PPP1CA                0.180   protein phosphatase 1, catalytic subunit, alpha isof...
PPP3CA                0.178   protein phosphatase 3, catalytic subunit, alpha iso...
PPP6C                 0.150   protein phosphatase 6, catalytic subunit isoform c ...
PPEF1                 0.146   protein phosphatase with EF hand calcium-binding dom...
PPEF2                 0.139   serine/threonine protein phosphatase with EF-hand mo...
DNAJC7                0.064   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
LOC100128362          0.062   PREDICTED: similar to protein phosphatase 2, cataly...
SGTA                  0.061   small glutamine-rich tetratricopeptide 
LOC100128362          0.061   PREDICTED: similar to protein phosphatase 2, cataly...
LOC100128362          0.061   PREDICTED: similar to protein phosphatase 2, cataly...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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