Guide to the Human Genome
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Name: LIMS2 Sequence: fasta or formatted (363aa) NCBI GI: 238859658
Description:

LIM and senescent cell antigen-like domains 2 isoform 1

Referenced in:

LIM Domain Proteins

Other entries for this name:
alt prot [341aa] LIM and senescent cell antigen-like domains 2 isoform 3
alt prot [336aa] LIM and senescent cell antigen-like domains 2 isoform 5
alt prot [365aa] LIM and senescent cell antigen-like domains 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         28           3
 C cysteine            9.1         33           2
 D aspartate           3.3         12           1
 E glutamate           7.4         27           1
 F phenylalanine       5.5         20           1
 G glycine             7.2         26           1
 H histidine           4.7         17           1
 I isoleucine          2.5          9           2
 K lysine              8.0         29           2
 L leucine             8.0         29           1
 M methionine          1.9          7           1
 N asparagine          4.7         17           3
 P proline             4.4         16           1
 Q glutamine           2.5          9           1
 R arginine            6.3         23           2
 S serine              4.4         16           1
 T threonine           2.8         10           1
 V valine              5.2         19           2
 W tryptophan          1.4          5           1
 Y tyrosine            3.0         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LIM and senescent cell antigen-like domains 2 isofo... 
LIMS2                 0.931   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.930   LIM and senescent cell antigen-like domains 2 isofor...
LIMS2                 0.926   LIM and senescent cell antigen-like domains 2 isofo...
LIMS1                 0.796   LIM and senescent cell antigen-like domains 1 
LOC100288695          0.383   PREDICTED: hypothetical protein XP_002342298 
LOC100293468          0.201   PREDICTED: similar to LIM and senescent cell antige...
PXN                   0.156   paxillin isoform 3 
PXN                   0.156   paxillin isoform 2 
PXN                   0.156   paxillin isoform 1 
LPXN                  0.144   leupaxin isoform 1 
LPXN                  0.144   leupaxin isoform 2 
TGFB1I1               0.144   transforming growth factor beta 1 induced transcrip...
TGFB1I1               0.144   transforming growth factor beta 1 induced transcript...
PDLIM5                0.137   PDZ and LIM domain 5 isoform b 
PDLIM5                0.137   PDZ and LIM domain 5 isoform a 
PDLIM7                0.137   PDZ and LIM domain 7 isoform 2 
PDLIM7                0.137   PDZ and LIM domain 7 isoform 1 
FHL1                  0.122   four and a half LIM domains 1 isoform 2 
FHL1                  0.122   four and a half LIM domains 1 isoform 2 
FHL1                  0.122   four and a half LIM domains 1 isoform 3 
FHL1                  0.122   four and a half LIM domains 1 isoform 5 
FHL1                  0.122   four and a half LIM domains 1 isoform 2 
FHL2                  0.119   four and a half LIM domains 2 
FHL2                  0.119   four and a half LIM domains 2 
FHL2                  0.119   four and a half LIM domains 2 
FHL2                  0.119   four and a half LIM domains 2 
FHL3                  0.117   four and a half LIM domains 3 
ABLIM1                0.115   actin-binding LIM protein 1 isoform c 
ABLIM1                0.115   actin-binding LIM protein 1 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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