Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LIMS1 Sequence: fasta or formatted (325aa) NCBI GI: 13518026
Description:

LIM and senescent cell antigen-like domains 1

Referenced in:

LIM Domain Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         24           1
 C cysteine           10.2         33           2
 D aspartate           3.4         11           1
 E glutamate           8.0         26           1
 F phenylalanine       6.5         21           1
 G glycine             6.8         22           2
 H histidine           4.9         16           1
 I isoleucine          3.7         12           2
 K lysine              8.9         29           2
 L leucine             7.4         24           1
 M methionine          1.8          6           1
 N asparagine          5.2         17           2
 P proline             4.3         14           1
 Q glutamine           3.4         11           2
 R arginine            5.2         17           2
 S serine              1.5          5           1
 T threonine           2.2          7           1
 V valine              5.2         17           2
 W tryptophan          0.9          3           1
 Y tyrosine            3.1         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   LIM and senescent cell antigen-like domains 1 
LIMS2                 0.882   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.882   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.882   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.882   LIM and senescent cell antigen-like domains 2 isofor...
LOC100288695          0.500   PREDICTED: hypothetical protein XP_002342298 
LOC100293468          0.263   PREDICTED: similar to LIM and senescent cell antige...
PXN                   0.178   paxillin isoform 3 
PXN                   0.178   paxillin isoform 2 
PXN                   0.178   paxillin isoform 1 
LPXN                  0.165   leupaxin isoform 1 
LPXN                  0.165   leupaxin isoform 2 
TGFB1I1               0.158   transforming growth factor beta 1 induced transcrip...
TGFB1I1               0.158   transforming growth factor beta 1 induced transcript...
PDLIM7                0.147   PDZ and LIM domain 7 isoform 2 
PDLIM7                0.147   PDZ and LIM domain 7 isoform 1 
PDLIM5                0.147   PDZ and LIM domain 5 isoform b 
PDLIM5                0.147   PDZ and LIM domain 5 isoform a 
FHL1                  0.136   four and a half LIM domains 1 isoform 2 
FHL1                  0.136   four and a half LIM domains 1 isoform 2 
FHL1                  0.136   four and a half LIM domains 1 isoform 3 
FHL1                  0.136   four and a half LIM domains 1 isoform 5 
FHL1                  0.136   four and a half LIM domains 1 isoform 2 
FHL2                  0.136   four and a half LIM domains 2 
FHL2                  0.136   four and a half LIM domains 2 
FHL2                  0.136   four and a half LIM domains 2 
FHL2                  0.136   four and a half LIM domains 2 
FHL3                  0.132   four and a half LIM domains 3 
LIMS3                 0.126   LIM and senescent cell antigen-like domains 3 
ABLIM1                0.124   actin-binding LIM protein 1 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press