Guide to the Human Genome
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Name: PLAC8 Sequence: fasta or formatted (115aa) NCBI GI: 195222737
Description:

placenta-specific 8

Referenced in:

Ovary, Uterus and Placenta

Other entries for this name:
alt mRNA [115aa] placenta-specific 8
alt mRNA [115aa] placenta-specific 8
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0          8           2
 C cysteine           13.9         16           2
 D aspartate           5.2          6           2
 E glutamate           0.9          1           1
 F phenylalanine       3.5          4           1
 G glycine             8.7         10           1
 H histidine           0.9          1           1
 I isoleucine          3.5          4           1
 K lysine              0.9          1           1
 L leucine             5.2          6           1
 M methionine          5.2          6           1
 N asparagine          3.5          4           1
 P proline             7.0          8           1
 Q glutamine           6.1          7           1
 R arginine            7.0          8           3
 S serine              3.5          4           1
 T threonine           7.8          9           1
 V valine              7.0          8           4
 W tryptophan          0.9          1           1
 Y tyrosine            2.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   placenta-specific 8 
PLAC8                 1.000   placenta-specific 8 
PLAC8                 1.000   placenta-specific 8 
CNFN                  0.247   cornifelin 
PLAC8L1               0.196   PLAC8-like 1 
KRTAP5-5              0.043   keratin associated protein 5-5 
KRTAP5-8              0.026   keratin associated protein 5-8 
KRTAP5-4              0.026   keratin associated protein 5-4 
LOC728318             0.021   PREDICTED: hypothetical protein 
KRTAP5-10             0.021   keratin associated protein 5-10 
MT4                   0.021   metallothionein 4 
KRTAP5-3              0.021   keratin associated protein 5-3 
LOC728318             0.021   PREDICTED: hypothetical protein 
LOC728318             0.021   PREDICTED: hypothetical protein 
ZNF837                0.021   zinc finger protein 837 isoform 1 
ZNF837                0.021   zinc finger protein 837 isoform 2 
KRTAP5-7              0.021   keratin associated protein 5-7 
LOC100289074          0.017   PREDICTED: hypothetical protein XP_002343632 
TWSG1                 0.013   twisted gastrulation 
MT3                   0.013   metallothionein 3 
KRTAP10-5             0.013   keratin associated protein 10-5 
KRTAP2-1              0.013   keratin associated protein KRTAP2.1A 
KRTAP2-4              0.013   keratin associated protein 2-4 
NFX1                  0.013   nuclear transcription factor, X-box binding 1 isofor...
NFX1                  0.013   nuclear transcription factor, X-box binding 1 isofor...
NFX1                  0.013   nuclear transcription factor, X-box binding 1 isofor...
LOC730755             0.013   PREDICTED: similar to keratin associated protein 2-...
CAD                   0.013   carbamoylphosphate synthetase 2/aspartate transcarba...
KRTAP1-1              0.013   keratin associated protein 1-1 
KRTAP10-8             0.009   keratin associated protein 10-8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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