Guide to the Human Genome
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Name: PLAC8L1 Sequence: fasta or formatted (177aa) NCBI GI: 71274180
Description:

PLAC8-like 1

Referenced in:

Ovary, Uterus and Placenta
Skin and Related Tissues

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         10           1
 C cysteine            7.9         14           2
 D aspartate           3.4          6           1
 E glutamate           5.1          9           1
 F phenylalanine       5.1          9           2
 G glycine             7.3         13           3
 H histidine           3.4          6           1
 I isoleucine          5.6         10           1
 K lysine              2.3          4           1
 L leucine             9.6         17           2
 M methionine          2.8          5           1
 N asparagine          2.3          4           1
 P proline             4.5          8           1
 Q glutamine           2.8          5           1
 R arginine            7.3         13           2
 S serine              7.9         14           2
 T threonine           6.2         11           2
 V valine              6.2         11           2
 W tryptophan          2.8          5           1
 Y tyrosine            1.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PLAC8-like 1 
CNFN                  0.216   cornifelin 
PLAC8                 0.129   placenta-specific 8 
PLAC8                 0.129   placenta-specific 8 
PLAC8                 0.129   placenta-specific 8 
LOC100133944          0.014   PREDICTED: similar to Fc fragment of IgG binding pr...
FCGBP                 0.014   Fc fragment of IgG binding protein 
ATP9B                 0.014   ATPase, class II, type 9B 
SFRP2                 0.011   secreted frizzled-related protein 2 precursor 
UNC5C                 0.008   unc5C 
MUTYH                 0.008   mutY homolog isoform 4 
MUTYH                 0.008   mutY homolog isoform 4 
MUTYH                 0.008   mutY homolog isoform 3 
MUTYH                 0.008   mutY homolog isoform 2 
MUTYH                 0.008   mutY homolog isoform 1 
MUTYH                 0.008   mutY homolog isoform 5 
TNFRSF12A             0.008   tumor necrosis factor receptor superfamily, member 12...
ADD1                  0.006   adducin 1 (alpha) isoform d 
ADD1                  0.006   adducin 1 (alpha) isoform c 
ADD1                  0.006   adducin 1 (alpha) isoform b 
ADD1                  0.006   adducin 1 (alpha) isoform a 
LOC100290309          0.006   PREDICTED: hypothetical protein XP_002348012 
ZMYND11               0.006   zinc finger, MYND domain containing 11 isoform a [H...
ZMYND11               0.006   zinc finger, MYND domain containing 11 isoform a [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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