Guide to the Human Genome
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Name: FREQ Sequence: fasta or formatted (172aa) NCBI GI: 192447423
Description:

frequenin homolog isoform 2

Referenced in:

Neurons

Other entries for this name:
alt prot [190aa] frequenin homolog isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         11           2
 C cysteine            0.6          1           1
 D aspartate           9.3         16           1
 E glutamate           8.1         14           3
 F phenylalanine       8.1         14           2
 G glycine             6.4         11           1
 H histidine           0.0          0           0
 I isoleucine          5.8         10           1
 K lysine              7.6         13           1
 L leucine             7.6         13           1
 M methionine          2.9          5           2
 N asparagine          4.1          7           1
 P proline             3.5          6           1
 Q glutamine           5.8         10           2
 R arginine            3.5          6           1
 S serine              4.1          7           1
 T threonine           5.8         10           1
 V valine              5.8         10           1
 W tryptophan          1.2          2           1
 Y tyrosine            3.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   frequenin homolog isoform 2 
FREQ                  0.978   frequenin homolog isoform 1 
HPCAL1                0.591   hippocalcin-like 1 
HPCAL1                0.591   hippocalcin-like 1 
NCALD                 0.585   neurocalcin delta 
NCALD                 0.585   neurocalcin delta 
NCALD                 0.585   neurocalcin delta 
NCALD                 0.585   neurocalcin delta 
NCALD                 0.585   neurocalcin delta 
NCALD                 0.585   neurocalcin delta 
NCALD                 0.585   neurocalcin delta 
NCALD                 0.585   neurocalcin delta 
HPCA                  0.578   hippocalcin 
VSNL1                 0.545   visinin-like 1 
HPCAL4                0.526   hippocalcin-like protein 4 
KCNIP2                0.449   Kv channel interacting protein 2 isoform 5 
KCNIP2                0.449   Kv channel interacting protein 2 isoform 6 
KCNIP2                0.449   Kv channel interacting protein 2 isoform 3 
KCNIP2                0.449   Kv channel interacting protein 2 isoform 1 
KCNIP2                0.449   Kv channel interacting protein 2 isoform 2 
KCNIP4                0.446   Kv channel interacting protein 4 isoform 3 
KCNIP4                0.446   Kv channel interacting protein 4 isoform 5 
KCNIP4                0.446   Kv channel interacting protein 4 isoform 4 
KCNIP4                0.446   Kv channel interacting protein 4 isoform 3 
KCNIP4                0.446   Kv channel interacting protein 4 isoform 2 
KCNIP4                0.446   Kv channel interacting protein 4 isoform 1 
KCNIP1                0.437   Kv channel interacting protein 1 isoform 3 
KCNIP1                0.437   Kv channel interacting protein 1 isoform 1 
KCNIP1                0.437   Kv channel interacting protein 1 isoform 2 
KCNIP2                0.434   Kv channel interacting protein 2 isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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