Guide to the Human Genome
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Name: UTP20 Sequence: fasta or formatted (2785aa) NCBI GI: 120587023
Description:

down-regulated in metastasis

Referenced in:

Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8        162           3
 C cysteine            1.7         46           2
 D aspartate           4.4        122           2
 E glutamate           8.4        233           3
 F phenylalanine       4.5        125           2
 G glycine             3.6        101           2
 H histidine           2.8         77           1
 I isoleucine          6.4        178           2
 K lysine              8.5        238           4
 L leucine            14.2        395           3
 M methionine          2.5         69           1
 N asparagine          3.4         94           2
 P proline             4.1        114           2
 Q glutamine           4.5        125           2
 R arginine            4.0        112           2
 S serine              6.4        178           2
 T threonine           5.4        149           2
 V valine              6.2        173           2
 W tryptophan          0.8         22           1
 Y tyrosine            2.6         72           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   down-regulated in metastasis 
LOC653877             1.000   PREDICTED: similar to Temporarily Assigned Gene name...
KIF5C                 0.003   kinesin family member 5C 
LOC100294364          0.003   PREDICTED: hypothetical protein 
SRRM1                 0.003   serine/arginine repetitive matrix 1 
C9orf93               0.003   hypothetical protein LOC203238 
XIRP2                 0.003   xin actin-binding repeat containing 2 isoform 1 [Ho...
YTHDC1                0.002   splicing factor YT521-B isoform 2 
YTHDC1                0.002   splicing factor YT521-B isoform 1 
CENPF                 0.002   centromere protein F 
LUZP1                 0.002   leucine zipper protein 1 
LUZP1                 0.002   leucine zipper protein 1 
GOLGA4                0.002   golgi autoantigen, golgin subfamily a, 4 
KIF21A                0.002   kinesin family member 21A 
IFT140                0.002   intraflagellar transport 140 
LRRIQ1                0.002   leucine-rich repeats and IQ motif containing 1 isof...
LRRIQ1                0.002   leucine-rich repeats and IQ motif containing 1 isof...
MYST3                 0.002   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.002   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.002   MYST histone acetyltransferase (monocytic leukemia)...
PRDM2                 0.002   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.002   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.002   retinoblastoma protein-binding zinc finger protein i...
GOLGB1                0.002   golgi autoantigen, golgin subfamily b, macrogolgin ...
CTTNBP2               0.002   cortactin binding protein 2 
NUP188                0.002   nucleoporin 188kDa 
FILIP1                0.002   filamin A interacting protein 1 
TRIM39                0.001   tripartite motif-containing 39 isoform 1 
GGA1                  0.001   golgi associated, gamma adaptin ear containing, ARF b...
GGA1                  0.001   golgi associated, gamma adaptin ear containing, ARF ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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