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Search of human proteins with 194272161
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|194272161 1D-myo-inositol-trisphosphate 3-kinase B [Homo
sapiens]
(946 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|194272161 1D-myo-inositol-trisphosphate 3-kinase B [Homo sapi... 1924 0.0
gi|4504789 1D-myo-inositol-trisphosphate 3-kinase A [Homo sapiens] 423 e-118
gi|18643383 inositol 1,4,5-trisphosphate 3-kinase C [Homo sapiens] 417 e-116
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 56 1e-07
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 56 1e-07
gi|37537554 hypothetical protein FLJ37538 [Homo sapiens] 52 3e-06
gi|163965366 nascent polypeptide-associated complex alpha subuni... 50 8e-06
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 49 2e-05
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 49 2e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 49 2e-05
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 49 2e-05
gi|239749196 PREDICTED: hypothetical protein XP_002346951 [Homo ... 48 5e-05
gi|239743276 PREDICTED: hypothetical protein XP_002342815 [Homo ... 48 5e-05
gi|239508959 PREDICTED: hypothetical protein [Homo sapiens] 48 5e-05
gi|91208420 bassoon protein [Homo sapiens] 47 6e-05
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 45 2e-04
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 45 2e-04
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 45 3e-04
gi|223633935 hypothetical protein LOC254427 [Homo sapiens] 45 4e-04
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 44 5e-04
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 44 5e-04
gi|22726201 inositol polyphosphate multikinase [Homo sapiens] 44 7e-04
gi|112821681 G protein-regulated inducer of neurite outgrowth 1 ... 44 7e-04
gi|18079216 CASK interacting protein 1 [Homo sapiens] 43 0.001
gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo ... 43 0.001
gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo ... 43 0.001
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 43 0.001
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 42 0.002
gi|148806908 fibronectin type III domain containing 1 [Homo sapi... 42 0.002
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 42 0.002
>gi|194272161 1D-myo-inositol-trisphosphate 3-kinase B [Homo
sapiens]
Length = 946
Score = 1924 bits (4984), Expect = 0.0
Identities = 946/946 (100%), Positives = 946/946 (100%)
Query: 1 MAVYCYALNSLVIMNSANEMKSGGGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPP 60
MAVYCYALNSLVIMNSANEMKSGGGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPP
Sbjct: 1 MAVYCYALNSLVIMNSANEMKSGGGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPP 60
Query: 61 AESLSPEEPRSPGGWRSGRRRLNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLS 120
AESLSPEEPRSPGGWRSGRRRLNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLS
Sbjct: 61 AESLSPEEPRSPGGWRSGRRRLNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLS 120
Query: 121 PPGPEEAKRKLRILQRELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCPF 180
PPGPEEAKRKLRILQRELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCPF
Sbjct: 121 PPGPEEAKRKLRILQRELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCPF 180
Query: 181 RSSSQPPGRVLVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLPGR 240
RSSSQPPGRVLVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLPGR
Sbjct: 181 RSSSQPPGRVLVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLPGR 240
Query: 241 AAPTGSEAQGPSAFVRMEKGIPASPRCGSPTAMEIDKRGSPTPGTRSCLAPSLGLFGASL 300
AAPTGSEAQGPSAFVRMEKGIPASPRCGSPTAMEIDKRGSPTPGTRSCLAPSLGLFGASL
Sbjct: 241 AAPTGSEAQGPSAFVRMEKGIPASPRCGSPTAMEIDKRGSPTPGTRSCLAPSLGLFGASL 300
Query: 301 TMATEVAARVTSTGPHRPQDLALTEPSGRARELEDLQPPEALVERQGQFLGSETSPAPER 360
TMATEVAARVTSTGPHRPQDLALTEPSGRARELEDLQPPEALVERQGQFLGSETSPAPER
Sbjct: 301 TMATEVAARVTSTGPHRPQDLALTEPSGRARELEDLQPPEALVERQGQFLGSETSPAPER 360
Query: 361 GGPRDGEPPGKMGKGYLPCGMPGSGEPEVGKRPEETTVSVQSAESSDSLSWSRLPRALAS 420
GGPRDGEPPGKMGKGYLPCGMPGSGEPEVGKRPEETTVSVQSAESSDSLSWSRLPRALAS
Sbjct: 361 GGPRDGEPPGKMGKGYLPCGMPGSGEPEVGKRPEETTVSVQSAESSDSLSWSRLPRALAS 420
Query: 421 VGPEEARSGAPVGGGRWQLSDRVEGGSPTLGLLGGSPSAQPGTGNVEAGIPSGRMLEPLP 480
VGPEEARSGAPVGGGRWQLSDRVEGGSPTLGLLGGSPSAQPGTGNVEAGIPSGRMLEPLP
Sbjct: 421 VGPEEARSGAPVGGGRWQLSDRVEGGSPTLGLLGGSPSAQPGTGNVEAGIPSGRMLEPLP 480
Query: 481 CWDAAKDLKEPQCPPGDRVGVQPGNSRVWQGTMEKAGLAWTRGTGVQSEGTWESQRQDSD 540
CWDAAKDLKEPQCPPGDRVGVQPGNSRVWQGTMEKAGLAWTRGTGVQSEGTWESQRQDSD
Sbjct: 481 CWDAAKDLKEPQCPPGDRVGVQPGNSRVWQGTMEKAGLAWTRGTGVQSEGTWESQRQDSD 540
Query: 541 ALPSPELLPQDPDKPFLRKACSPSNIPAVIITDMGTQEDGALEETQGSPRGNLPLRKLSS 600
ALPSPELLPQDPDKPFLRKACSPSNIPAVIITDMGTQEDGALEETQGSPRGNLPLRKLSS
Sbjct: 541 ALPSPELLPQDPDKPFLRKACSPSNIPAVIITDMGTQEDGALEETQGSPRGNLPLRKLSS 600
Query: 601 SSASSTGFSSSYEDSEEDISSDPERTLDPNSAFLHTLDQQKPRVSKSWRKIKNMVHWSPF 660
SSASSTGFSSSYEDSEEDISSDPERTLDPNSAFLHTLDQQKPRVSKSWRKIKNMVHWSPF
Sbjct: 601 SSASSTGFSSSYEDSEEDISSDPERTLDPNSAFLHTLDQQKPRVSKSWRKIKNMVHWSPF 660
Query: 661 VMSFKKKYPWIQLAGHAGSFKAAANGRILKKHCESEQRCLDRLMVDVLRPFVPAYHGDVV 720
VMSFKKKYPWIQLAGHAGSFKAAANGRILKKHCESEQRCLDRLMVDVLRPFVPAYHGDVV
Sbjct: 661 VMSFKKKYPWIQLAGHAGSFKAAANGRILKKHCESEQRCLDRLMVDVLRPFVPAYHGDVV 720
Query: 721 KDGERYNQMDDLLADFDSPCVMDCKMGIRTYLEEELTKARKKPSLRKDMYQKMIEVDPEA 780
KDGERYNQMDDLLADFDSPCVMDCKMGIRTYLEEELTKARKKPSLRKDMYQKMIEVDPEA
Sbjct: 721 KDGERYNQMDDLLADFDSPCVMDCKMGIRTYLEEELTKARKKPSLRKDMYQKMIEVDPEA 780
Query: 781 PTEEEKAQRAVTKPRYMQWRETISSTATLGFRIEGIKKEDGTVNRDFKKTKTREQVTEAF 840
PTEEEKAQRAVTKPRYMQWRETISSTATLGFRIEGIKKEDGTVNRDFKKTKTREQVTEAF
Sbjct: 781 PTEEEKAQRAVTKPRYMQWRETISSTATLGFRIEGIKKEDGTVNRDFKKTKTREQVTEAF 840
Query: 841 REFTKGNHNILIAYRDRLKAIRTTLEVSPFFKCHEVIGSSLLFIHDKKEQAKVWMIDFGK 900
REFTKGNHNILIAYRDRLKAIRTTLEVSPFFKCHEVIGSSLLFIHDKKEQAKVWMIDFGK
Sbjct: 841 REFTKGNHNILIAYRDRLKAIRTTLEVSPFFKCHEVIGSSLLFIHDKKEQAKVWMIDFGK 900
Query: 901 TTPLPEGQTLQHDVPWQEGNREDGYLSGLNNLVDILTEMSQDAPLA 946
TTPLPEGQTLQHDVPWQEGNREDGYLSGLNNLVDILTEMSQDAPLA
Sbjct: 901 TTPLPEGQTLQHDVPWQEGNREDGYLSGLNNLVDILTEMSQDAPLA 946
>gi|4504789 1D-myo-inositol-trisphosphate 3-kinase A [Homo sapiens]
Length = 461
Score = 423 bits (1088), Expect = e-118
Identities = 227/399 (56%), Positives = 276/399 (69%), Gaps = 7/399 (1%)
Query: 545 PELLPQDPDKPFLRKACSPSNIPAVIITDMGTQE-DGALEETQGSPRGNLPLRKLSSSSA 603
P LP+ P P + + + P V T G E + GS P R+LS+SS
Sbjct: 67 PNGLPRAPPAPVIPQLTVTAEEPDVPPTSPGPPERERDCLPAAGSSHLQQP-RRLSTSSV 125
Query: 604 SSTGFSSSYEDSEEDISSDPERTLDPNSAFLHTLDQQKPRVSKSWRKIKNMVHWSPFVMS 663
SSTG SS EDSE+D+ SD E N D + W+KI+ MV+ P +
Sbjct: 126 SSTGSSSLLEDSEDDLLSDSESRSRGNVQLEAGEDVGQ---KNHWQKIRTMVNL-PVISP 181
Query: 664 FKKKYPWIQLAGHAGSFKAAA-NGRILKKHCESEQRCLDRLMVDVLRPFVPAYHGDVVKD 722
FKK+Y W+QLAGH GSFKAA +G ILK+ E E+ CL RLM D LR VPA+HG V +D
Sbjct: 182 FKKRYAWVQLAGHTGSFKAAGTSGLILKRCSEPERYCLARLMADALRGCVPAFHGVVERD 241
Query: 723 GERYNQMDDLLADFDSPCVMDCKMGIRTYLEEELTKARKKPSLRKDMYQKMIEVDPEAPT 782
GE Y Q+ DLL FD PCV+DCKMG+RTYLEEELTKAR++P LRKDMY+KM+ VDPEAPT
Sbjct: 242 GESYLQLQDLLDGFDGPCVLDCKMGVRTYLEEELTKARERPKLRKDMYKKMLAVDPEAPT 301
Query: 783 EEEKAQRAVTKPRYMQWRETISSTATLGFRIEGIKKEDGTVNRDFKKTKTREQVTEAFRE 842
EEE AQRAVTKPRYMQWRE ISS+ TLGFRIEGIKK DG+ + DFK T++REQV F E
Sbjct: 302 EEEHAQRAVTKPRYMQWREGISSSTTLGFRIEGIKKADGSCSTDFKTTRSREQVLRVFEE 361
Query: 843 FTKGNHNILIAYRDRLKAIRTTLEVSPFFKCHEVIGSSLLFIHDKKEQAKVWMIDFGKTT 902
F +G+ +L Y +RL+ IR TLEVS FF+ HEVIGSSLLF+HD +A VW+IDFGKTT
Sbjct: 362 FVQGDEEVLRRYLNRLQQIRDTLEVSEFFRRHEVIGSSLLFVHDHCHRAGVWLIDFGKTT 421
Query: 903 PLPEGQTLQHDVPWQEGNREDGYLSGLNNLVDILTEMSQ 941
PLP+GQ L H PW+EGNREDGYL GL+NL+ IL +++
Sbjct: 422 PLPDGQILDHRRPWEEGNREDGYLLGLDNLIGILASLAE 460
>gi|18643383 inositol 1,4,5-trisphosphate 3-kinase C [Homo sapiens]
Length = 683
Score = 417 bits (1071), Expect = e-116
Identities = 219/432 (50%), Positives = 285/432 (65%), Gaps = 40/432 (9%)
Query: 528 SEGTWESQRQD-SDALPSPELLPQDPDKPFLRKA--------------CSP-SNIPAVII 571
++G+W D S P + L +P+ L + CSP +P +II
Sbjct: 273 TDGSWTQPSTDGSQTAPGTDCLLGEPEDGPLEEPEPGELLTHLYSHLKCSPLCPVPRLII 332
Query: 572 TDMGTQEDGALEETQGSPRGNLPLRKLSSSSASSTGFSS--SYEDSEEDISSDPERTLDP 629
T + + P+ S S GFSS S+++SE+D+ + DP
Sbjct: 333 TPETPEPEAQ------------PVGPPSRVEGGSGGFSSASSFDESEDDVVAGGGGASDP 380
Query: 630 NSAFLHTLDQQKPRVSKSWRKIKNMVHWSPFVMSFKKKYPWIQLAGHAGSFKAAANGRIL 689
SK W+K+K ++ +SPFV+SF+K YPW+QL+GHAG+F+A +GRIL
Sbjct: 381 EDR----------SGSKPWKKLKTVLKYSPFVVSFRKHYPWVQLSGHAGNFQAGEDGRIL 430
Query: 690 KKHCESEQRCLDRLMVDVLRPFVPAYHGDVVKDGERYNQMDDLLADFDSPCVMDCKMGIR 749
K+ C+ EQR L++LM D LRPFVPAY+G V++DG+ +NQM+DLLADF+ P +MDCKMG R
Sbjct: 431 KRFCQCEQRSLEQLMKDPLRPFVPAYYGMVLQDGQTFNQMEDLLADFEGPSIMDCKMGSR 490
Query: 750 TYLEEELTKARKKPSLRKDMYQKMIEVDPEAPTEEEKAQRAVTKPRYMQWRETISSTATL 809
TYLEEEL KAR++P RKDMY+KM+ VDP APT EE AQ AVTKPRYMQWRET+SST+TL
Sbjct: 491 TYLEEELVKARERPRPRKDMYEKMVAVDPGAPTPEEHAQGAVTKPRYMQWRETMSSTSTL 550
Query: 810 GFRIEGIKKEDGTVNRDFKKTKTREQVTEAFREFTKGNHNILIAYRDRLKAIRTTLEVSP 869
GFRIEGIKK DGT N +FKKT+ EQVT+ +F G+H IL Y L+ +R LE+SP
Sbjct: 551 GFRIEGIKKADGTCNTNFKKTQALEQVTKVLEDFVDGDHVILQKYVACLEELREALEISP 610
Query: 870 FFKCHEVIGSSLLFIHDKKEQAKVWMIDFGKTTPLPEGQTLQHDVPWQEGNREDGYLSGL 929
FFK HEV+GSSLLF+HD AKVWMIDFGKT LP+ QTL H +PW EGNREDGYL GL
Sbjct: 611 FFKTHEVVGSSLLFVHDHTGLAKVWMIDFGKTVALPDHQTLSHRLPWAEGNREDGYLWGL 670
Query: 930 NNLVDILTEMSQ 941
+N++ +L ++Q
Sbjct: 671 DNMICLLQGLAQ 682
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 56.2 bits (134), Expect = 1e-07
Identities = 103/419 (24%), Positives = 138/419 (32%), Gaps = 59/419 (14%)
Query: 17 ANEMKSGGGPGPSGSETPPPP------------RRAVLSPGSVFSPGRGASFLFPPAESL 64
A + G PGP G P P R A PG+ PG A + PP +
Sbjct: 854 AGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG-AAGRVGPPGSNG 912
Query: 65 SPEEPRSPG-GWRSGRRRLNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPG 123
+P P PG + G + SG + + P+ +G+ +G PPG
Sbjct: 913 NPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPG 972
Query: 124 PEEAKRKLRILQRELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCPFRSS 183
P+ + I VG+ + + P S G+ +P R
Sbjct: 973 PQGLAGQRGI-------------VGLPGQRGERGFPGLPGP-SGEPGKQGAPGASGDRGP 1018
Query: 184 SQPPGRVLVQGARSEERRTKSWGEQCP---ETSGTDSGRKGGPSLCSSQVKKGMPPLPGR 240
P G + G E R S G P + + G +G + G P PG
Sbjct: 1019 PGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGP 1078
Query: 241 AAPTGSE-------AQGPSAFVRMEKGIPASPR-CGSPTAMEIDKRGSPTPGTRSC---- 288
A PTG + AQGP M PA R P DK + PG R
Sbjct: 1079 AGPTGKQGDRGEAGAQGP-----MGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHR 1133
Query: 289 -LAPSLGLFGASLTMATEVAARVTS-TGPHRPQDLALTEPSGR--ARELEDLQPPEALVE 344
GL G + A+ +GP P PSG+ A + P
Sbjct: 1134 GFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPP--GPVGPSGKDGANGIPGPIGPPGPRG 1191
Query: 345 RQGQFLGSETSPAPERGGPRDGEPPGKMGKGYLPCGMPGSGEPEVGKRPEETTVSVQSA 403
R G ET PA G P PPG G G G G E G P + + Q+A
Sbjct: 1192 RSG-----ETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQYMRADQAA 1245
Score = 43.9 bits (102), Expect = 7e-04
Identities = 135/570 (23%), Positives = 177/570 (31%), Gaps = 132/570 (23%)
Query: 24 GGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFP--------------PAESLSPEEP 69
G PG +G PP P+ A PG+ PG +P ES SP E
Sbjct: 258 GKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGEN 317
Query: 70 RSPGGWRSGRRRLNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSP-------- 121
SPG G R L G + P+ A RG+ Q AG P
Sbjct: 318 GSPGPM--GPRGLPGERGR---------TGPAGAAGARGNDGQPGPAGPPGPVGPAGGPG 366
Query: 122 -PGPEEAKRKLRILQRELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCP- 179
PG AK + + + A P + + A+ + P
Sbjct: 367 FPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPG 426
Query: 180 ------FRSSSQPPGRVLVQGARSEERRTKS------WGEQCPETSGTDSGRKGGPSLCS 227
F PPG G + +T GEQ P+ +G +G P
Sbjct: 427 IAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAG 486
Query: 228 SQVKKGMPPLPGRAAPTG--SEAQGPSAFVRMEKGIPASPRCGSPTAMEIDKRGSPTPGT 285
+ K+G PG P G E P +G P P +G+P
Sbjct: 487 EEGKRGARGEPGGVGPIGPPGERGAPG-----NRGFPGQDGLAGP-------KGAPGERG 534
Query: 286 RSCLAPSLGLFGASLTMATEVAARVTSTGPHRPQDLALTEPSGRARELEDLQPPEALVER 345
S LA G G P RP + L G D P
Sbjct: 535 PSGLAGPKGANG----------------DPGRPGEPGLPGARGLTGRPGDAGP------- 571
Query: 346 QGQFLGSETSPAPERGGPRDGEPPGKMGKGYLP--CGMPG----SGEP-EVGKRPEETTV 398
QG+ +G +P E G P PPG G P G PG +GEP + G++
Sbjct: 572 QGK-VGPSGAPG-EDGRP---GPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAP 626
Query: 399 SVQSAESSDSLSWSRLPRALASVGPEEARSGAPVGGGRWQL----SDRVEGGSP------ 448
++ D + + P A E GAP G L EGG P
Sbjct: 627 GLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVP 686
Query: 449 ----TLGLLG-----------GSPSAQPGTGNVEAGIPSGRMLEPLPCWDAAKDLKEPQC 493
GL+G GSP AQ G+ R L P D K P
Sbjct: 687 GEAGAPGLVGPRGERGFPGERGSPGAQ--------GLQGPRGLPGTPGTDGPKGASGPAG 738
Query: 494 PPGDRVGVQPGNSRVWQGTMEKAGLAWTRG 523
PPG + P + G AG+A +G
Sbjct: 739 PPGAQ---GPPGLQGMPGERGAAGIAGPKG 765
Score = 43.1 bits (100), Expect = 0.001
Identities = 137/530 (25%), Positives = 175/530 (33%), Gaps = 109/530 (20%)
Query: 17 ANEMKSGGGPGPSGSE---TPPPPRRAVLSPGSVFSPGRGAS--FLFPPAESLSPEEPRS 71
A E G PGPSG + PP P PG PG + + P E P E S
Sbjct: 650 AGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGS 709
Query: 72 PGG-WRSGRRRLNSSSGSGSGSSGSSVSSPSWA------------------GRLRGDRQQ 112
PG G R L + G+ S + P A +GDR
Sbjct: 710 PGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGD 769
Query: 113 VVAAGTLSPPGPEEAKRKLRILQRELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRA 172
V G PG ++ R L N + G A S+ + R G
Sbjct: 770 VGEKGPEGAPG-KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGER-GET 827
Query: 173 RSPSPCPFRSSSQPPGRVLVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKK 232
P P F + PPG GA+ E+ ++G+KG Q
Sbjct: 828 GPPGPAGF---AGPPGADGQPGAKGEQ---------------GEAGQKGDAGAPGPQGPS 869
Query: 233 GMPPLPGRAAPTGSE----AQGPSAFVRMEKGIP-ASPRCGSPTAMEIDKRGSPTPGTRS 287
G P G TG + AQGP G P A+ R G P + + PG
Sbjct: 870 GAPGPQGPTGVTGPKGARGAQGPPG----ATGFPGAAGRVGPPGS-------NGNPGPPG 918
Query: 288 CLAPSLGLFGASLTMATEVAARVTSTGPHRPQDLALTEPSGRARELEDLQPPEALVERQG 347
PS G G AR S P R + L P+G P E
Sbjct: 919 PPGPS-GKDGPK-------GARGDSGPPGRAGEPGLQGPAG--------PPGEKGEPGDD 962
Query: 348 QFLGSETSPAPERGGPRDG--EPPGKMGKGYLPCGMPG-SGEPEVGKRPEETTVSVQSAE 404
G+E P P+ + G PG+ G+ P G+PG SGEP GK+ A
Sbjct: 963 GPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFP-GLPGPSGEP--GKQ------GAPGAS 1013
Query: 405 SSDSLSWSRLPRALASVGPEEARSGAPVG-------GGRWQLSDRVEGGSPTLGLLG--- 454
P L E R G+P G DR E G+ +G G
Sbjct: 1014 GDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGA--VGAPGAPG 1071
Query: 455 --GSPSAQPGTGNV----EAGIPSGRMLEPLPCWDAAKDLKEPQCPPGDR 498
GSP TG EAG G M P A+ ++ PQ P GD+
Sbjct: 1072 PPGSPGPAGPTGKQGDRGEAG-AQGPMGPSGPA--GARGIQGPQGPRGDK 1118
Score = 42.4 bits (98), Expect = 0.002
Identities = 137/553 (24%), Positives = 182/553 (32%), Gaps = 95/553 (17%)
Query: 24 GGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSPEEPRSPGGWRSGRRRLN 83
G PGP+G + P P G+ PG G + PP E +P PG + L
Sbjct: 471 GEPGPAGPQGAPGPAGEEGKRGARGEPG-GVGPIGPPGERGAPGNRGFPG-----QDGLA 524
Query: 84 SSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPGPEEAKRKLRILQRELQNVQV 143
G+ S ++ P A GD G PG A R L +
Sbjct: 525 GPKGAPGERGPSGLAGPKGAN---GD------PGRPGEPGLPGA----RGLTGRPGDAGP 571
Query: 144 NQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCPFRSSSQP--------PGRVLVQGA 195
KVG A + P+ R P P ++ +P PG ++G
Sbjct: 572 QGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGL 631
Query: 196 RSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLPGRAAPTG-----SEAQG 250
++ T + G P + G +G P Q G P PG G EA
Sbjct: 632 PGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGA 691
Query: 251 PSAF-VRMEKGIPASPRCGSPTAMEID-KRGSP-TPGTRSCLAPSLGLFGASLTMATEVA 307
P R E+G P GSP A + RG P TPGT G GAS A
Sbjct: 692 PGLVGPRGERGFPGER--GSPGAQGLQGPRGLPGTPGTD-------GPKGAS-----GPA 737
Query: 308 ARVTSTGPHRPQDL-------ALTEPSGRARELEDLQPPEALVERQGQFL-GSETSPAPE 359
+ GP Q + + P G ++ + P A + G+ L G P P
Sbjct: 738 GPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPA 797
Query: 360 RGGPRDGE--PPGKMGKGYL--------------PCGMPG----SGEPEV-GKRPEETTV 398
GE PPG G P G G G+P G++ E
Sbjct: 798 GANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQK 857
Query: 399 SVQSAESSDSLSWSRLPRALASV-GPEEAR--SGAPVGGGRWQLSDRV-----EGGSPTL 450
A S + P+ V GP+ AR G P G + RV G
Sbjct: 858 GDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPP 917
Query: 451 GLLGGSPSAQPGTGNVEAGIPSGRMLEPLPCWDAAKDLKEPQCPPGDRVGVQPGNSRVWQ 510
G G S P ++G P GR EP L+ P PPG++ +
Sbjct: 918 GPPGPSGKDGPKGARGDSG-PPGRAGEP--------GLQGPAGPPGEKGEPGDDGPSGAE 968
Query: 511 GTMEKAGLAWTRG 523
G GLA RG
Sbjct: 969 GPPGPQGLAGQRG 981
Score = 40.0 bits (92), Expect = 0.010
Identities = 123/516 (23%), Positives = 154/516 (29%), Gaps = 92/516 (17%)
Query: 24 GGPGPSGSETPPPPRRAVLSPGSVFSPG-RGASFLFPPAESLSPEEPRSPGG--WRSGRR 80
G GP G+ P P A PG PG RGA+ + P + P G + G R
Sbjct: 726 GTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGR 785
Query: 81 RLNSSSG----SGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPGPEEAKRKLRILQR 136
L G +G+ V P AG G R G PPGP
Sbjct: 786 GLTGPIGPPGPAGANGEKGEVGPPGPAGSA-GARGAPGERGETGPPGPAG------FAGP 838
Query: 137 ELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPR-----LGRARSPSPCPFRSSSQPPGRVL 191
+ Q K EA + + A P+ P G P R + PPG
Sbjct: 839 PGADGQPGAKGEQGEAGQKGDAGA-PGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATG 897
Query: 192 VQGARSEERRTKSWGEQCPE----TSGTDS-----------GRKGGPSLCSSQVKKGMPP 236
GA S G P SG D GR G P L G
Sbjct: 898 FPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKG 957
Query: 237 LPGRAAPTGSEAQGPSAFVRMEKGIPASPRCGSPTAMEIDKRGSPTPGTRSCLAPSLGLF 296
PG P+G+E + ++GI P + +RG P S G
Sbjct: 958 EPGDDGPSGAEGPPGPQGLAGQRGIVGLPG-------QRGERGFPGLPGPSGEPGKQGAP 1010
Query: 297 GASLTMATEVAARVTSTGPHRPQDLALTEPSGRARELEDLQPPEALVERQGQFLGSETSP 356
GAS GP P LT P+G G E SP
Sbjct: 1011 GASGDRG--------PPGPVGPP--GLTGPAGEP--------------------GREGSP 1040
Query: 357 APERGGPRDGEPPGKMGKGYL----------PCGMPGSGEPEVGKRPEETTVSVQSAESS 406
+ RDG K +G P G PG P GK+ + Q
Sbjct: 1041 GADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGP-TGKQGDRGEAGAQGPMGP 1099
Query: 407 DSLSWSRLPRALASVGPEEARSGAPVGGGRWQLSDRVEGGSPTLGLLGGSPSAQPGTGNV 466
+ +R GP+ R G + + G L L G P G
Sbjct: 1100 SGPAGAR-----GIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGAS 1154
Query: 467 EAGIPSGRMLEPLPCWDAAKD----LKEPQCPPGDR 498
PSG P P + KD + P PPG R
Sbjct: 1155 GPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPR 1190
Score = 36.6 bits (83), Expect = 0.11
Identities = 116/531 (21%), Positives = 150/531 (28%), Gaps = 98/531 (18%)
Query: 22 SGGGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSPEEPRSPGGWRSGRRR 81
+ G PGP G + P + ++ P PP P+ P G R R
Sbjct: 96 ASGQPGPKGQKGEPGDIKDIVGPKG------------PPG----PQGPAGEQGPRGDRGD 139
Query: 82 LNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPGPEEAKRKLRILQRELQNV 141
G +P G G PPGP N
Sbjct: 140 KGEKGAPGPRGRDGEPGTPGNPG----------PPGPPGPPGPPGLGG----------NF 179
Query: 142 QVNQKVGMFEAHIQAQSSAIQAPRSPR-----LGRARSPSPCPFRSSSQPPGRVLVQGAR 196
G E AQ +Q P P G A +P P F+ + PG V G
Sbjct: 180 AAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPM 239
Query: 197 S---------------EERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPL---- 237
E + GE+ P G G P L + +G P L
Sbjct: 240 GPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAK 299
Query: 238 -----PGRAAPTGSEAQGPSAFVRMEKGIPASPRCGSPTAMEIDKRGSPTPGTRSCLAPS 292
PG +GS + S +G+P P + PG P
Sbjct: 300 GEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPV 359
Query: 293 LGLFGASLTMATEVAARVTSTGPHRPQDLALTEPSGRARELEDLQP--------PEALVE 344
G A TG P+ P G P + +
Sbjct: 360 GPAGGPGFPGAPGAKGEAGPTGARGPE--GAQGPRGEPGTPGSPGPAGASGNPGTDGIPG 417
Query: 345 RQGQFLGSETSPAPERGGPRDGEPPGKMGKGYLPCGMPG-SGEP-------EVGKRPEET 396
+G + AP GPR PPG G P G G +GEP E G + E
Sbjct: 418 AKGSAGAPGIAGAPGFPGPRG--PPGPQG-ATGPLGPKGQTGEPGIAGFKGEQGPKGEPG 474
Query: 397 TVSVQSAESSDSLSWSR----LPRALASVGPEEARSGAPVGGGRWQLSDRVEGGSPTLGL 452
Q A R P + +GP R GAP G + D + G G
Sbjct: 475 PAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGER-GAP-GNRGFPGQDGLAGPKGAPGE 532
Query: 453 LGGSPSAQPGTGN------VEAGIPSGRMLEPLPCWDAAKDLKEPQCPPGD 497
G S A P N E G+P R L P + P PG+
Sbjct: 533 RGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGE 583
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 56.2 bits (134), Expect = 1e-07
Identities = 103/419 (24%), Positives = 138/419 (32%), Gaps = 59/419 (14%)
Query: 17 ANEMKSGGGPGPSGSETPPPP------------RRAVLSPGSVFSPGRGASFLFPPAESL 64
A + G PGP G P P R A PG+ PG A + PP +
Sbjct: 785 AGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG-AAGRVGPPGSNG 843
Query: 65 SPEEPRSPG-GWRSGRRRLNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPG 123
+P P PG + G + SG + + P+ +G+ +G PPG
Sbjct: 844 NPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPG 903
Query: 124 PEEAKRKLRILQRELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCPFRSS 183
P+ + I VG+ + + P S G+ +P R
Sbjct: 904 PQGLAGQRGI-------------VGLPGQRGERGFPGLPGP-SGEPGKQGAPGASGDRGP 949
Query: 184 SQPPGRVLVQGARSEERRTKSWGEQCP---ETSGTDSGRKGGPSLCSSQVKKGMPPLPGR 240
P G + G E R S G P + + G +G + G P PG
Sbjct: 950 PGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGP 1009
Query: 241 AAPTGSE-------AQGPSAFVRMEKGIPASPR-CGSPTAMEIDKRGSPTPGTRSC---- 288
A PTG + AQGP M PA R P DK + PG R
Sbjct: 1010 AGPTGKQGDRGEAGAQGP-----MGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHR 1064
Query: 289 -LAPSLGLFGASLTMATEVAARVTS-TGPHRPQDLALTEPSGR--ARELEDLQPPEALVE 344
GL G + A+ +GP P PSG+ A + P
Sbjct: 1065 GFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPP--GPVGPSGKDGANGIPGPIGPPGPRG 1122
Query: 345 RQGQFLGSETSPAPERGGPRDGEPPGKMGKGYLPCGMPGSGEPEVGKRPEETTVSVQSA 403
R G ET PA G P PPG G G G G E G P + + Q+A
Sbjct: 1123 RSG-----ETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQYMRADQAA 1176
Score = 43.9 bits (102), Expect = 7e-04
Identities = 135/570 (23%), Positives = 177/570 (31%), Gaps = 132/570 (23%)
Query: 24 GGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFP--------------PAESLSPEEP 69
G PG +G PP P+ A PG+ PG +P ES SP E
Sbjct: 189 GKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGEN 248
Query: 70 RSPGGWRSGRRRLNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSP-------- 121
SPG G R L G + P+ A RG+ Q AG P
Sbjct: 249 GSPGPM--GPRGLPGERGR---------TGPAGAAGARGNDGQPGPAGPPGPVGPAGGPG 297
Query: 122 -PGPEEAKRKLRILQRELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCP- 179
PG AK + + + A P + + A+ + P
Sbjct: 298 FPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPG 357
Query: 180 ------FRSSSQPPGRVLVQGARSEERRTKS------WGEQCPETSGTDSGRKGGPSLCS 227
F PPG G + +T GEQ P+ +G +G P
Sbjct: 358 IAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAG 417
Query: 228 SQVKKGMPPLPGRAAPTG--SEAQGPSAFVRMEKGIPASPRCGSPTAMEIDKRGSPTPGT 285
+ K+G PG P G E P +G P P +G+P
Sbjct: 418 EEGKRGARGEPGGVGPIGPPGERGAPG-----NRGFPGQDGLAGP-------KGAPGERG 465
Query: 286 RSCLAPSLGLFGASLTMATEVAARVTSTGPHRPQDLALTEPSGRARELEDLQPPEALVER 345
S LA G G P RP + L G D P
Sbjct: 466 PSGLAGPKGANG----------------DPGRPGEPGLPGARGLTGRPGDAGP------- 502
Query: 346 QGQFLGSETSPAPERGGPRDGEPPGKMGKGYLP--CGMPG----SGEP-EVGKRPEETTV 398
QG+ +G +P E G P PPG G P G PG +GEP + G++
Sbjct: 503 QGK-VGPSGAPG-EDGRP---GPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAP 557
Query: 399 SVQSAESSDSLSWSRLPRALASVGPEEARSGAPVGGGRWQL----SDRVEGGSP------ 448
++ D + + P A E GAP G L EGG P
Sbjct: 558 GLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVP 617
Query: 449 ----TLGLLG-----------GSPSAQPGTGNVEAGIPSGRMLEPLPCWDAAKDLKEPQC 493
GL+G GSP AQ G+ R L P D K P
Sbjct: 618 GEAGAPGLVGPRGERGFPGERGSPGAQ--------GLQGPRGLPGTPGTDGPKGASGPAG 669
Query: 494 PPGDRVGVQPGNSRVWQGTMEKAGLAWTRG 523
PPG + P + G AG+A +G
Sbjct: 670 PPGAQ---GPPGLQGMPGERGAAGIAGPKG 696
Score = 43.1 bits (100), Expect = 0.001
Identities = 137/530 (25%), Positives = 175/530 (33%), Gaps = 109/530 (20%)
Query: 17 ANEMKSGGGPGPSGSE---TPPPPRRAVLSPGSVFSPGRGAS--FLFPPAESLSPEEPRS 71
A E G PGPSG + PP P PG PG + + P E P E S
Sbjct: 581 AGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGS 640
Query: 72 PGG-WRSGRRRLNSSSGSGSGSSGSSVSSPSWA------------------GRLRGDRQQ 112
PG G R L + G+ S + P A +GDR
Sbjct: 641 PGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGD 700
Query: 113 VVAAGTLSPPGPEEAKRKLRILQRELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRA 172
V G PG ++ R L N + G A S+ + R G
Sbjct: 701 VGEKGPEGAPG-KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGER-GET 758
Query: 173 RSPSPCPFRSSSQPPGRVLVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKK 232
P P F + PPG GA+ E+ ++G+KG Q
Sbjct: 759 GPPGPAGF---AGPPGADGQPGAKGEQ---------------GEAGQKGDAGAPGPQGPS 800
Query: 233 GMPPLPGRAAPTGSE----AQGPSAFVRMEKGIP-ASPRCGSPTAMEIDKRGSPTPGTRS 287
G P G TG + AQGP G P A+ R G P + + PG
Sbjct: 801 GAPGPQGPTGVTGPKGARGAQGPPG----ATGFPGAAGRVGPPGS-------NGNPGPPG 849
Query: 288 CLAPSLGLFGASLTMATEVAARVTSTGPHRPQDLALTEPSGRARELEDLQPPEALVERQG 347
PS G G AR S P R + L P+G P E
Sbjct: 850 PPGPS-GKDGPK-------GARGDSGPPGRAGEPGLQGPAG--------PPGEKGEPGDD 893
Query: 348 QFLGSETSPAPERGGPRDG--EPPGKMGKGYLPCGMPG-SGEPEVGKRPEETTVSVQSAE 404
G+E P P+ + G PG+ G+ P G+PG SGEP GK+ A
Sbjct: 894 GPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFP-GLPGPSGEP--GKQ------GAPGAS 944
Query: 405 SSDSLSWSRLPRALASVGPEEARSGAPVG-------GGRWQLSDRVEGGSPTLGLLG--- 454
P L E R G+P G DR E G+ +G G
Sbjct: 945 GDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGA--VGAPGAPG 1002
Query: 455 --GSPSAQPGTGNV----EAGIPSGRMLEPLPCWDAAKDLKEPQCPPGDR 498
GSP TG EAG G M P A+ ++ PQ P GD+
Sbjct: 1003 PPGSPGPAGPTGKQGDRGEAG-AQGPMGPSGPA--GARGIQGPQGPRGDK 1049
Score = 42.4 bits (98), Expect = 0.002
Identities = 137/553 (24%), Positives = 182/553 (32%), Gaps = 95/553 (17%)
Query: 24 GGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSPEEPRSPGGWRSGRRRLN 83
G PGP+G + P P G+ PG G + PP E +P PG + L
Sbjct: 402 GEPGPAGPQGAPGPAGEEGKRGARGEPG-GVGPIGPPGERGAPGNRGFPG-----QDGLA 455
Query: 84 SSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPGPEEAKRKLRILQRELQNVQV 143
G+ S ++ P A GD G PG A R L +
Sbjct: 456 GPKGAPGERGPSGLAGPKGAN---GD------PGRPGEPGLPGA----RGLTGRPGDAGP 502
Query: 144 NQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCPFRSSSQP--------PGRVLVQGA 195
KVG A + P+ R P P ++ +P PG ++G
Sbjct: 503 QGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGL 562
Query: 196 RSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLPGRAAPTG-----SEAQG 250
++ T + G P + G +G P Q G P PG G EA
Sbjct: 563 PGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGA 622
Query: 251 PSAF-VRMEKGIPASPRCGSPTAMEID-KRGSP-TPGTRSCLAPSLGLFGASLTMATEVA 307
P R E+G P GSP A + RG P TPGT G GAS A
Sbjct: 623 PGLVGPRGERGFPGER--GSPGAQGLQGPRGLPGTPGTD-------GPKGAS-----GPA 668
Query: 308 ARVTSTGPHRPQDL-------ALTEPSGRARELEDLQPPEALVERQGQFL-GSETSPAPE 359
+ GP Q + + P G ++ + P A + G+ L G P P
Sbjct: 669 GPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPA 728
Query: 360 RGGPRDGE--PPGKMGKGYL--------------PCGMPG----SGEPEV-GKRPEETTV 398
GE PPG G P G G G+P G++ E
Sbjct: 729 GANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQK 788
Query: 399 SVQSAESSDSLSWSRLPRALASV-GPEEAR--SGAPVGGGRWQLSDRV-----EGGSPTL 450
A S + P+ V GP+ AR G P G + RV G
Sbjct: 789 GDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPP 848
Query: 451 GLLGGSPSAQPGTGNVEAGIPSGRMLEPLPCWDAAKDLKEPQCPPGDRVGVQPGNSRVWQ 510
G G S P ++G P GR EP L+ P PPG++ +
Sbjct: 849 GPPGPSGKDGPKGARGDSG-PPGRAGEP--------GLQGPAGPPGEKGEPGDDGPSGAE 899
Query: 511 GTMEKAGLAWTRG 523
G GLA RG
Sbjct: 900 GPPGPQGLAGQRG 912
Score = 40.0 bits (92), Expect = 0.010
Identities = 123/516 (23%), Positives = 154/516 (29%), Gaps = 92/516 (17%)
Query: 24 GGPGPSGSETPPPPRRAVLSPGSVFSPG-RGASFLFPPAESLSPEEPRSPGG--WRSGRR 80
G GP G+ P P A PG PG RGA+ + P + P G + G R
Sbjct: 657 GTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGR 716
Query: 81 RLNSSSG----SGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPGPEEAKRKLRILQR 136
L G +G+ V P AG G R G PPGP
Sbjct: 717 GLTGPIGPPGPAGANGEKGEVGPPGPAGSA-GARGAPGERGETGPPGPAG------FAGP 769
Query: 137 ELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPR-----LGRARSPSPCPFRSSSQPPGRVL 191
+ Q K EA + + A P+ P G P R + PPG
Sbjct: 770 PGADGQPGAKGEQGEAGQKGDAGA-PGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATG 828
Query: 192 VQGARSEERRTKSWGEQCPE----TSGTDS-----------GRKGGPSLCSSQVKKGMPP 236
GA S G P SG D GR G P L G
Sbjct: 829 FPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKG 888
Query: 237 LPGRAAPTGSEAQGPSAFVRMEKGIPASPRCGSPTAMEIDKRGSPTPGTRSCLAPSLGLF 296
PG P+G+E + ++GI P + +RG P S G
Sbjct: 889 EPGDDGPSGAEGPPGPQGLAGQRGIVGLPG-------QRGERGFPGLPGPSGEPGKQGAP 941
Query: 297 GASLTMATEVAARVTSTGPHRPQDLALTEPSGRARELEDLQPPEALVERQGQFLGSETSP 356
GAS GP P LT P+G G E SP
Sbjct: 942 GASGDRG--------PPGPVGPP--GLTGPAGEP--------------------GREGSP 971
Query: 357 APERGGPRDGEPPGKMGKGYL----------PCGMPGSGEPEVGKRPEETTVSVQSAESS 406
+ RDG K +G P G PG P GK+ + Q
Sbjct: 972 GADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGP-TGKQGDRGEAGAQGPMGP 1030
Query: 407 DSLSWSRLPRALASVGPEEARSGAPVGGGRWQLSDRVEGGSPTLGLLGGSPSAQPGTGNV 466
+ +R GP+ R G + + G L L G P G
Sbjct: 1031 SGPAGAR-----GIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGAS 1085
Query: 467 EAGIPSGRMLEPLPCWDAAKD----LKEPQCPPGDR 498
PSG P P + KD + P PPG R
Sbjct: 1086 GPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPR 1121
Score = 34.7 bits (78), Expect = 0.43
Identities = 115/527 (21%), Positives = 148/527 (28%), Gaps = 98/527 (18%)
Query: 26 PGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSPEEPRSPGGWRSGRRRLNSS 85
PGP G + P + ++ P PP P+ P G R R
Sbjct: 31 PGPKGQKGEPGDIKDIVGPKG------------PPG----PQGPAGEQGPRGDRGDKGEK 74
Query: 86 SGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPGPEEAKRKLRILQRELQNVQVNQ 145
G +P G G PPGP N
Sbjct: 75 GAPGPRGRDGEPGTPGNPG----------PPGPPGPPGPPGLGG----------NFAAQM 114
Query: 146 KVGMFEAHIQAQSSAIQAPRSPR-----LGRARSPSPCPFRSSSQPPGRVLVQGARS--- 197
G E AQ +Q P P G A +P P F+ + PG V G
Sbjct: 115 AGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRG 174
Query: 198 ------------EERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPL-------- 237
E + GE+ P G G P L + +G P L
Sbjct: 175 PPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAG 234
Query: 238 -PGRAAPTGSEAQGPSAFVRMEKGIPASPRCGSPTAMEIDKRGSPTPGTRSCLAPSLGLF 296
PG +GS + S +G+P P + PG P
Sbjct: 235 APGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAG 294
Query: 297 GASLTMATEVAARVTSTGPHRPQDLALTEPSGRARELEDLQP--------PEALVERQGQ 348
G A TG P+ P G P + + +G
Sbjct: 295 GPGFPGAPGAKGEAGPTGARGPE--GAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGS 352
Query: 349 FLGSETSPAPERGGPRDGEPPGKMGKGYLPCGMPG-SGEP-------EVGKRPEETTVSV 400
+ AP GPR PPG G P G G +GEP E G + E
Sbjct: 353 AGAPGIAGAPGFPGPRG--PPGPQG-ATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGP 409
Query: 401 QSAESSDSLSWSR----LPRALASVGPEEARSGAPVGGGRWQLSDRVEGGSPTLGLLGGS 456
Q A R P + +GP R GAP G + D + G G G S
Sbjct: 410 QGAPGPAGEEGKRGARGEPGGVGPIGPPGER-GAP-GNRGFPGQDGLAGPKGAPGERGPS 467
Query: 457 PSAQPGTGN------VEAGIPSGRMLEPLPCWDAAKDLKEPQCPPGD 497
A P N E G+P R L P + P PG+
Sbjct: 468 GLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGE 514
>gi|37537554 hypothetical protein FLJ37538 [Homo sapiens]
Length = 841
Score = 52.0 bits (123), Expect = 3e-06
Identities = 111/448 (24%), Positives = 154/448 (34%), Gaps = 103/448 (22%)
Query: 5 CYALNSLVIMNSANEMKSGGGPGPSGSETPPP-PRRAVLSPGSVFSPGRGASFLFPPAES 63
C+++ S+ + SGG S + PP PRR + S+ PG GA PP++
Sbjct: 85 CHSVGSMDSVGGGPGGASGGLTEDSSTRRPPAKPRRHPSTKLSMVGPGSGAET--PPSKK 142
Query: 64 LSPEEPRSPGGWRSGRRRLNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPG 123
++P +P G S R+ P R + Q V+ PPG
Sbjct: 143 AGSQKP-TPEGRESSRK------------------VPPQKPRRSPNTQLSVSFDESCPPG 183
Query: 124 PEEAKRKLRILQRELQNVQV--NQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCPFR 181
P L LQR + +V + VG E + + R G + P
Sbjct: 184 PSPRGGNLP-LQRLTRGSRVAGDPDVGAQEEPVYIEMVGDVFRGGGRSGGGLAGPPLGGG 242
Query: 182 SSSQPPGRVLVQGARSEERRTKSWGEQC----PETSGTDSGRKGGPSLCSSQVKKGMPPL 237
+ P G A S+ +++ E+ PE +G GR GP PPL
Sbjct: 243 GPTPPAG------ADSDSEESEAIYEEMKYPLPEEAG--EGRANGP-----------PPL 283
Query: 238 PGRAAPTGSEAQGPSAFVRMEKGIPASPRCGSPT----------------------AMEI 275
+ P A P A R +P S R G+PT A
Sbjct: 284 TATSPPQQPHALPPHAHRRPASALP-SRRDGTPTKTTPCEIPPPFPNLLQHRPPLLAFPQ 342
Query: 276 DKRGSPTPGTRSCLAPSL--GLFGASLTMATEVAARVTSTGPHRPQ----DLALTEPSGR 329
K S TPG P L A T A +V AR T P P +L L PSGR
Sbjct: 343 AKSASRTPGDGVSRLPVLCHSKEPAGSTPAPQVPARERETPPPPPPPPAANLLLLGPSGR 402
Query: 330 ARELEDLQPPEALVERQG--QFLGSETSPAPERGGPRDGEP-PGKMGKG----------- 375
AR PP+ + +G + S + P+ G P P + G
Sbjct: 403 ARSHSTPLPPQGSGQPRGERELPNSHSMICPKAAGAPAAPPAPAALLPGPPKDKAVSYTM 462
Query: 376 -----------YLPCGMP-GSGEPEVGK 391
LP G P G+GEP+ K
Sbjct: 463 VYSAVKVTTHSVLPAGPPLGAGEPKTEK 490
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 50.4 bits (119), Expect = 8e-06
Identities = 106/429 (24%), Positives = 154/429 (35%), Gaps = 54/429 (12%)
Query: 26 PGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSPEEPRSPGGWRSGRRRLNSS 85
P P G PPP+ A +P + +G L P+ +P P + G S
Sbjct: 1157 PSPKGGLATPPPKGAPTTPAATPPSPKGG--LATPSPKGAPTTPAATPPSPKGGLATPSP 1214
Query: 86 SGS--------GSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPGPEEAKRKLRILQRE 137
G+ S G + SP A G +PP P+ A
Sbjct: 1215 KGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPATPP-PKGAPTPPAATPPS 1273
Query: 138 LQNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSP---SPCPFR----SSSQPPGRV 190
L+ H A + A+ P SP+ G A SP +P P S PG
Sbjct: 1274 LKGGLAT------PPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTP 1327
Query: 191 LVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLPGRAAPTGSEAQG 250
+GA + T + P T KGGP+ SS K+G P P A P S G
Sbjct: 1328 PPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSS--KEG--PTPPAATP--SHKGG 1381
Query: 251 PSAFVRMEKGIPASPR-CGSPTAMEI----DKRGSPTPGTRSCLA-PSLG-LFGASLTMA 303
P+ K PA P G PT+ + K+ TP TR A PS G L ++T
Sbjct: 1382 PAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPPAVTPV 1441
Query: 304 TEVAARVTSTGPHRPQDLALTEPSGRARELEDLQPPEALVERQGQFLGSETSPAPERGGP 363
+ A TS P+ T S L + PP + + + +SP
Sbjct: 1442 SLKKAPATSA----PKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSP------K 1491
Query: 364 RDGEPPGKMGKGYLPCGMPGS-----GEPEVGKRPEETTVSVQSAESSDSLS--WSRLPR 416
+ P MG LP +P S P + P T ++ S ++ +L+ + +P
Sbjct: 1492 KAPATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATLAPKEALIPP 1551
Query: 417 ALASVGPEE 425
A+ P++
Sbjct: 1552 AMTVPSPKK 1560
Score = 43.1 bits (100), Expect = 0.001
Identities = 109/501 (21%), Positives = 155/501 (30%), Gaps = 105/501 (20%)
Query: 15 NSANEMKSGGGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSP-------- 66
NS + S P + S TPP P+ A +P +V +P PP E+ +P
Sbjct: 839 NSLSFQGSKDSPATTHSPTPPSPKGAP-TPSAV-TPLSPKGVTLPPKETPTPSVVNLPFP 896
Query: 67 -EEPRSPGGWRSGRRRLNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPGPE 125
E P +P ++ + SSS + ++ + P+ + +G A GP
Sbjct: 897 KEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPA-SPSPKGAPTPPAATPPSPKGGPA 955
Query: 126 EAKRKLRILQRELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRAR-SPSPCPFRSSS 184
K A + P SP+ G A SP P ++
Sbjct: 956 TPSPKW------------------------APTPPAATPPSPKGGPATPSPKGAPTPPAA 991
Query: 185 QPPGRVLVQGARSEERRTKSWGEQCPETSG-------TDSGRKGGPSLCSSQVKKGMPPL 237
PP + G P G T KG P+ PP
Sbjct: 992 TPP--------------SPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPA 1037
Query: 238 PGRAAPTGSEAQGPSAFVRMEKGIPASPRCGSPTAMEIDKRGSPTPGTRSCLAPSLGLFG 297
+P GS A P + KG P +P P+ K G TP + P
Sbjct: 1038 ATPPSPKGSPAATP-----LPKGAPTTPAATLPSP----KGGPATPSLKGAPTPP----- 1083
Query: 298 ASLTMATEVAARVTSTGPHRPQDLALTEPSGRARELEDLQPPEALVERQGQFLGSETSPA 357
+ T + T + P A T PS + PP G+ T+PA
Sbjct: 1084 -AATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLAT---PPHK---------GAPTTPA 1130
Query: 358 PERGGPRDG--EPPGKMGKGYLPCGMPGSGEPEVGKRPEETTVSVQSAESSDSLSWSRLP 415
P+ G PP K G P P S + + P + + +A
Sbjct: 1131 ATPPSPKGGLATPPPK-GAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKG----- 1184
Query: 416 RALASVGPEEARSGAPVGGGRWQLSDRVEGGSPTLGLLGGSPSAQPGTGNVEAGIPSGRM 475
LA+ P+ GAP + SP GL SP P T P G +
Sbjct: 1185 -GLATPSPK----GAPT-------TPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGL 1232
Query: 476 LEPLPCWDAAKDLKEPQCPPG 496
P P P P G
Sbjct: 1233 ATPSPKGAPTTPAATPPSPKG 1253
Score = 42.0 bits (97), Expect = 0.003
Identities = 102/484 (21%), Positives = 158/484 (32%), Gaps = 98/484 (20%)
Query: 26 PGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSPEEPRSPGGWRSGRRRLNSS 85
P P G PP+ A P + +G+ PP + +P P + +
Sbjct: 1295 PSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTP 1354
Query: 86 SGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPGPEEAKRKLRILQRELQNVQVNQ 145
S G ++ SS P+ + ++PP P+
Sbjct: 1355 SSKGGPTTPSSKEGPTPPAATPSHK----GGPAMTPPSPK-------------------- 1390
Query: 146 KVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCPFRSSSQPPGRVLVQGARSEERRTKSW 205
+ AI +P+ G SP+ P P V +GA T S
Sbjct: 1391 -----------RGPAIPSPK----GDPTSPAVIPLSPKKAPATPVTREGA-----ATPSK 1430
Query: 206 GEQCP--------ETSGTDSGRKGGPSLCSSQVKKGMPPLPGRAAPTGSEAQGPS--AFV 255
G+ P + + S KGGP+ SS KG P LP P+ E P A
Sbjct: 1431 GDLTPPAVTPVSLKKAPATSAPKGGPATPSS---KGDPTLPAVTPPSPKEPPAPKQVATS 1487
Query: 256 RMEKGIPASPR-CGSPTAMEI----DKRGSPTPGTR----------------SCLAPSLG 294
K PA+P G+PT + K TP +R + LAP
Sbjct: 1488 SSPKKAPATPAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATLAPKEA 1547
Query: 295 LFGASLTMAT-----------EVAARVTSTGPHRPQDLALTEPSGRARELEDLQPPEAL- 342
L ++T+ + E A +S P + + G E L PP
Sbjct: 1548 LIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTS 1607
Query: 343 -VERQGQFLGSETSPAPERGGPRDGEPPGKMGKGYLPCGMPGSGEPEVGKRPEETTVSVQ 401
++ + T P+PE+G P G P P S + + P T +
Sbjct: 1608 PSPKEAPTPPAVTPPSPEKG----PATPAPKGTPTSPPVTPSSLK-DSPTSPASVTCKMG 1662
Query: 402 SA--ESSDSLSWSRLPRALASVGPEEARSGAPVGGGRWQLSDRVEGGSPTLGLLGGSPSA 459
+ ++S L + P AL V A P+ + + + S T + PSA
Sbjct: 1663 ATVPQASKGLPAKKGPTALKEVLVAPAPESTPIITAPTRKGPQTKKSSATSPPICPDPSA 1722
Query: 460 QPGT 463
+ G+
Sbjct: 1723 KNGS 1726
Score = 39.7 bits (91), Expect = 0.013
Identities = 96/465 (20%), Positives = 143/465 (30%), Gaps = 57/465 (12%)
Query: 59 PPAESLSPEEPRSPGGWRSGRRRLNSSSGSGSGSSGSSVSS------PSWAGRLRGDRQQ 112
P S+SP+ R P ++ ++ + G+ S VS P + +G +
Sbjct: 796 PLGVSVSPQTKRPP------TKKGSAGPDTPIGNLSSPVSPVEASFLPENSLSFQGSKDS 849
Query: 113 VVAAGTLSPPGPEEAKRKLRILQRELQNVQVNQKV----GMFEAHIQAQSSAIQAPRSPR 168
+ +PP P+ A + + V + K + + A AP+
Sbjct: 850 PATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQAP 909
Query: 169 LGRARSPSPCPFRSSSQPPGRVLVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSS 228
S SP R++ P G + + S + G P + T KGGP+ S
Sbjct: 910 ALSMTSSSPKKARATPAPKG---IPASPSPK------GAPTPPAA-TPPSPKGGPATPSP 959
Query: 229 Q----VKKGMPPLP--GRAAPTGSEAQGPSAFVRMEKGIPASPRCGSPTAMEIDKRGSPT 282
+ PP P G A P+ A P A P SP+ G T +G+PT
Sbjct: 960 KWAPTPPAATPPSPKGGPATPSPKGAPTPPA------ATPPSPKGGPATP---SPKGAPT 1010
Query: 283 PGTRSCLAPSLGLFGASLTMATEVAARVTSTGPHRPQDLALTEPSGRARELEDLQPPEAL 342
P + +P T P + A P G P
Sbjct: 1011 PPAVTPPSPKGSPAATPFPKGASTPPAATPPSP-KGSPAATPLPKGAPTTPAATLPSPKG 1069
Query: 343 VERQGQFLGSETSPAPERGGPRDGEP-PGKMGKGYLPCGMPGSGEPEVGKRPEETTVSVQ 401
G+ T PA P+ G P G P P S + + P + +
Sbjct: 1070 GPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTP 1129
Query: 402 SAESSDSLSWSRLPRALASVGPEEARSGAPVGGGRWQLSDRVEGGSPTL----------G 451
+A P + A +P GG L+ G+PT G
Sbjct: 1130 AATPPSPKGGLATPPPKGAPTTPAATPPSPKGG----LATPPPKGAPTTPAATPPSPKGG 1185
Query: 452 LLGGSPSAQPGTGNVEAGIPSGRMLEPLPCWDAAKDLKEPQCPPG 496
L SP P T P G + P P P P G
Sbjct: 1186 LATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKG 1230
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 49.3 bits (116), Expect = 2e-05
Identities = 122/504 (24%), Positives = 158/504 (31%), Gaps = 91/504 (18%)
Query: 19 EMKSGGGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSPEE-----PRSPG 73
E + G PGP G P+ A SPG G + PP + +P + P P
Sbjct: 732 ERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGP-IGPPGPAGAPGDKGESGPSGPA 790
Query: 74 GWRSGRRRLNSSSGSGSGSSGSSVSSPSWAGR--LRGDRQQVVAAGTLSPPGPEEAKRKL 131
G R G P G+ +G+ A G PPGP
Sbjct: 791 GPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGP------- 843
Query: 132 RILQRELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCPFRSSSQPPGRVL 191
+ P P +G +P R S+ PPG
Sbjct: 844 ---------------------------AGPAGPPGP-IGNVGAPGAKGARGSAGPPGATG 875
Query: 192 VQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLPGRAAPTGSEAQGP 251
GA G P +G++GG + + G PG P G GP
Sbjct: 876 FPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGK---GPRGETGPAGRPGEVGPPG--PPGP 930
Query: 252 SAFVRMEKGIPASPRCGSPTAMEIDKRGSP-TPGTRSCLAPSLGLFGASLTMATEVAARV 310
+ EKG SP P G+P TPG + +A G+ G + + R
Sbjct: 931 AG----EKG---SPGADGPA-------GAPGTPGPQG-IAGQRGVVG----LPGQRGERG 971
Query: 311 TSTGPHRPQDLALTEPSGRARELEDLQP--PEALVERQGQFLGSETSPAPERGGPRDGEP 368
P + PSG + E P P L G+ G E +P E RDG P
Sbjct: 972 FPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGE-SGREGAPGAEGSPGRDGSP 1030
Query: 369 PGKMGKGYL-PCGMPGSGEPEVGKRPEETTVSVQSAESSDSLSWSRLPRALASVGPEEAR 427
K +G P G PG+ P V A S + VGP AR
Sbjct: 1031 GAKGDRGETGPAGPPGAPGAPGAPGP------VGPAGKSGDRGETGPAGPAGPVGPVGAR 1084
Query: 428 SGAPVGGGRWQLSDRVEGGSPTL-------GLLG--GSPSAQPGTGNVEAGIPSGRMLEP 478
A G R + E G + GL G G P + G A P+G P
Sbjct: 1085 GPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPP 1144
Query: 479 ----LPCWDAAKDLKEPQCPPGDR 498
P D L P PPG R
Sbjct: 1145 GSAGAPGKDGLNGLPGPIGPPGPR 1168
Score = 44.3 bits (103), Expect = 5e-04
Identities = 128/530 (24%), Positives = 166/530 (31%), Gaps = 108/530 (20%)
Query: 24 GGPGPSGSETPPPPRRAVLSPGSVFSPG----RGASFLFPPAESLSPEEPRSPGGWRSGR 79
G PG G PP P+ A PG+ PG RG S L P P+ G
Sbjct: 236 GKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGEN 295
Query: 80 RRLNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPGPEEAKRKLRILQRELQ 139
G +P AG RG+ AAG P GP
Sbjct: 296 GAPGQMGPRGLPGERGRPGAPGPAGA-RGNDGATGAAGPPGPTGPAGPPG---------- 344
Query: 140 NVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCPFRSSSQPPGRVLVQGARSEE 199
F + A+ A P+ PR S P R PPG G
Sbjct: 345 ----------FPGAVGAKGEA--GPQGPR----GSEGPQGVRGEPGPPGPAGAAGPAGNP 388
Query: 200 RRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLPGRAAPTGSEAQGPSAFVRMEK 259
G + G G P + G P PG P+G + G +
Sbjct: 389 GADGQPGAK---------GANGAPGIA------GAPGFPGARGPSGPQGPGGPPGPKGNS 433
Query: 260 GIPASPRCGSPT-----------------AMEIDKRGS-PTPGTRSCLAP--------SL 293
G P +P T A E KRG+ PG P S
Sbjct: 434 GEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSR 493
Query: 294 GLFGASLTMATE-VAARVTSTGPHRPQDLALTEPSGRARELEDLQPPEALVERQGQFLGS 352
G GA + A S GP P+ P R P EA + GS
Sbjct: 494 GFPGADGVAGPKGPAGERGSPGPAGPKG----SPGEAGR------PGEAGLPGAKGLTGS 543
Query: 353 ETSPAPE-RGGP-----RDGE-----PPGKMGKGYLPCGMPG----SGEP-EVGKRPEET 396
SP P+ + GP +DG PPG G+ + G PG +GEP + G+R
Sbjct: 544 PGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGV-MGFPGPKGAAGEPGKAGERGVPG 602
Query: 397 TVSVQSAESSDSLSWSRLPRALASVGPEEARSGAPVGGGRWQLSDRVEGGSPTLGLLGGS 456
D + ++ P A E G P G +Q + G + G G
Sbjct: 603 PPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQG-PAGSPGFQ---GLPGPAGPPG-EAGK 657
Query: 457 PSAQPGTGNVEAGIPSGRMLEPLPCWDAAKDLKEPQCPPGDR-VGVQPGN 505
P Q G++ A PSG E + + ++ P P G R PGN
Sbjct: 658 PGEQGVPGDLGAPGPSGARGE--RGFPGERGVQGPPGPAGPRGANGAPGN 705
Score = 42.0 bits (97), Expect = 0.003
Identities = 76/288 (26%), Positives = 91/288 (31%), Gaps = 50/288 (17%)
Query: 16 SANEMKSGGGPGPSGSETPPPP------RRAVLSPGSVFSPG----RG--ASFLFPPAES 63
S + + G PGP G + PP P R A PG PG RG S FP A+
Sbjct: 441 SKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADG 500
Query: 64 LSPEEPRSPGGWRSGRRRLNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPG 123
++ P+ P G R G P G L G G PPG
Sbjct: 501 VA--GPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKG-LTGSPGSPGPDGKTGPPG 557
Query: 124 PEEAKRKLRILQRELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCPFRSS 183
P + G A QA P+ G A P R
Sbjct: 558 PAGQDGR-------------PGPPGPPGARGQAGVMGFPGPK----GAAGEPGKAGERGV 600
Query: 184 SQPPGRVLVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLPGRAAP 243
PPG V G E G Q P +G +G S G LPG A P
Sbjct: 601 PGPPGAVGPAGKDGEA------GAQGPPGPAGPAGERGEQGPAGS---PGFQGLPGPAGP 651
Query: 244 TGSEAQGPSAFVRMEKGIPASPRCGSPTAMEIDKRGSPTPGTRSCLAP 291
G EA P E+G+P P+ +RG PG R P
Sbjct: 652 PG-EAGKPG-----EQGVPGDLGAPGPSGAR-GERG--FPGERGVQGP 690
Score = 41.2 bits (95), Expect = 0.005
Identities = 66/284 (23%), Positives = 90/284 (31%), Gaps = 27/284 (9%)
Query: 17 ANEMKSGGGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSPEEPRSPGGWR 76
A E S G GP+G+ P P+ G V PG+ FP S E +
Sbjct: 931 AGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGA 990
Query: 77 SGRRRLNSSSG----------SGSGSSGSSVSSPSWAGR--LRGDRQQVVAAGTLSPPGP 124
SG R G SG + + SP G +GDR + AG PG
Sbjct: 991 SGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGA 1050
Query: 125 EEAKRKLRILQRELQNVQVNQ-----KVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCP 179
A + + + VG A A P+ PR + +
Sbjct: 1051 PGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPA------GPQGPRGDKGETGE--- 1101
Query: 180 FRSSSQPPGRVLVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLPG 239
+ G G + S GEQ P + +G +G P + K G+ LPG
Sbjct: 1102 -QGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPG 1160
Query: 240 RAAPTGSEAQGPSAFVRMEKGIPASPRCGSPTAMEIDKRGSPTP 283
P G + A G P P P + D P P
Sbjct: 1161 PIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFLPQP 1204
Score = 40.8 bits (94), Expect = 0.006
Identities = 124/503 (24%), Positives = 154/503 (30%), Gaps = 87/503 (17%)
Query: 22 SGGGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSPE----EPRSPGGWRS 77
+ G PGP+G PP AV + G G P S P+ EP PG +
Sbjct: 330 AAGPPGPTGPAGPPGFPGAVGAKGEAGPQG--------PRGSEGPQGVRGEPGPPGPAGA 381
Query: 78 GRRRLNSSSGSGSGSSGSSVSSPSWAGR--LRGDRQQVVAAGTLSPPGPEEAKRKLRILQ 135
N + G+ G++ +P AG G R G PPGP+
Sbjct: 382 AGPAGNPGADGQPGAKGAN-GAPGIAGAPGFPGARGPSGPQGPGGPPGPK---------- 430
Query: 136 RELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPR-LGRARSPSPCPFRSSSQPPGRVLVQG 194
S AP S G P P + P G +G
Sbjct: 431 --------------------GNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRG 470
Query: 195 ARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLPGRAAPTGS--EAQGP- 251
AR E T G G G + + G PG A P GS EA P
Sbjct: 471 ARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPG 530
Query: 252 SAFVRMEKGIPASPRCGSPTAMEIDKRGSPTPGTRSCLAPSLGLFGASLTMATEVAARVT 311
A + KG+ SP P K G P P + G G A A +
Sbjct: 531 EAGLPGAKGLTGSPGSPGPDG----KTGPPGPAGQDGRPGPPGPPG-----ARGQAGVMG 581
Query: 312 STGPHRPQDLALTEPSGRARELEDLQPPEAL------VERQGQFLGSETSPAPERGGPRD 365
GP A EP G+A E PP A+ E Q PA ERG
Sbjct: 582 FPGPKG----AAGEP-GKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGP 636
Query: 366 GEPPGKMGKGYLPCGMPGSGEPEVGKRPEETTVSVQSAESSDSLSWSR-LPRALASVGPE 424
PG G P G PG E GK E+ A R P GP
Sbjct: 637 AGSPGFQGLPG-PAGPPG----EAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPP 691
Query: 425 EARSGAPVGGGRWQLSDRVEGGSPTLGLLGGSPSAQ--PGTGNVEAGIP---------SG 473
G + + G+P G+P Q PG AG+P
Sbjct: 692 GPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGA-AGLPGPKGDRGDAGP 750
Query: 474 RMLEPLPCWDAAKDLKEPQCPPG 496
+ + P D + L P PPG
Sbjct: 751 KGADGSPGKDGVRGLTGPIGPPG 773
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 49.3 bits (116), Expect = 2e-05
Identities = 100/356 (28%), Positives = 127/356 (35%), Gaps = 73/356 (20%)
Query: 191 LVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLPGRAAPTGSEAQG 250
L Q + + + R + CP+ + G G L G P LPGR G +
Sbjct: 1233 LCQASFTTQPRPEPCPVYCPKGQKGEPGEMG---LRGQVGPPGDPGLPGRTGAPGPQGPP 1289
Query: 251 PSAFVRMEKGIP-ASPRCGSPTAMEIDKRGSP-TPGTRSCLAPSLGLFGASLTMATEVAA 308
SA + E+G P A R GSP + G+P TPG L S GL G
Sbjct: 1290 GSATAKGERGFPGADGRPGSP-----GRAGNPGTPGAPG-LKGSPGLPGP--------RG 1335
Query: 309 RVTSTGPHRPQDLALTEPSGRARELEDLQPPEALVERQGQFLGSETSPAPER-GGPRDGE 367
GP P+ EP GQ +G E P R G P
Sbjct: 1336 DPGERGPRGPKG----EPGA-----------------PGQVIGGEGPGLPGRKGDPGPSG 1374
Query: 368 PPGKMG-------KGYLPCGMPGSG-EPEVGKRPEETTVSVQSAESSDSLSWSRLPRALA 419
PPG G +G P G+PG+ + + G R E E + LP
Sbjct: 1375 PPGPRGPLGDPGPRG--PPGLPGTAMKGDKGDRGERGPPG--PGEGGIAPGEPGLPGLPG 1430
Query: 420 SVGPEEARSGAPVG--GGRWQLSDRVEGGSPTLGLLGGSPSAQPGTGNVEAGIPSGRMLE 477
S GP+ PVG G + + D E G+P L GSP Q G A P G
Sbjct: 1431 SPGPQ-----GPVGPPGKKGEKGDS-EDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGF 1484
Query: 478 PLPCWDAAKDLKEPQCPPGDRVGVQPGNSRVWQGTMEKAGLAWTRG----TGVQSE 529
P P +A + K + PPG P SR G + G G TG Q E
Sbjct: 1485 PGPLGEAGE--KGERGPPG------PAGSRGLPGVAGRPGAKGPEGPPGPTGRQGE 1532
Score = 43.1 bits (100), Expect = 0.001
Identities = 103/412 (25%), Positives = 138/412 (33%), Gaps = 66/412 (16%)
Query: 187 PGRVLVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLC---SSQVKKGMPPLPGRAAP 243
PG+ +G R GE+ + + GR G P + + G P PGR
Sbjct: 1651 PGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGPPGRLVD 1710
Query: 244 TGSEA-----------QGPSAFVRMEKGIPASPRCGSPTAMEIDK-RGSP----TPGTRS 287
TG A +GP R KG P P G+P I+ RG P PG R
Sbjct: 1711 TGPGAREKGEPGDRGQEGP----RGPKGDPGLP--GAPGERGIEGFRGPPGPQGDPGVRG 1764
Query: 288 CLAPSLGLFGASLTMATEVAARVTSTGPHRPQDLALTEPSGRARELEDLQPPEALVERQG 347
L + + + + GP + P+G A + D R
Sbjct: 1765 PAGEKGDRGPPGLDGRSGLDGKPGAAGP--------SGPNGAAGKAGDPGRDGLPGLRGE 1816
Query: 348 QFLGSETSPAPERGGPRDGEPPGKMGKGYLPCGMPGSGEPEVGKRPEETTVSVQSAESSD 407
Q L + P G P + PG GK P G PG E G++ E+ E D
Sbjct: 1817 QGLPGPSGPPGLPGKPGEDGKPGLNGKNGEP-GDPG----EDGRKGEKGDSGASGREGRD 1871
Query: 408 SLSWSR-LPRALASVGPE----------EARSGAPVG----GGRWQLSDRVEGGSPTLGL 452
R P L GP + G P G G R + + E G P
Sbjct: 1872 GPKGERGAPGILGPQGPPGLPGPVGPPGQGFPGVPGGTGPKGDRGETGSKGEQGLPGERG 1931
Query: 453 LGGSPSAQPGTGNV--EAGIPSGRMLEPLPCWDAAKDLKEP-----QCPPGDRVGVQPGN 505
L G P + P + AGI + + E + WD + P + P GD P
Sbjct: 1932 LRGEPGSVPNVDRLLETAGIKASALREIVETWDESSGSFLPVPERRRGPKGDSGEQGPPG 1991
Query: 506 SRVWQGTMEKAGLAWTRG-TGVQS-EGTWESQRQDSDALPSPELLPQDPDKP 555
G + GL RG G Q G +R P P L +P KP
Sbjct: 1992 KEGPIGFPGERGLKGDRGDPGPQGPPGLALGER----GPPGPSGLAGEPGKP 2039
Score = 42.4 bits (98), Expect = 0.002
Identities = 115/479 (24%), Positives = 155/479 (32%), Gaps = 126/479 (26%)
Query: 24 GGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSPEEPRSPGGWRSGRRRLN 83
G PGPSG PP PR + PG PG PG G +
Sbjct: 1368 GDPGPSG---PPGPRGPLGDPGPRGPPGL-------------------PGTAMKGDKGDR 1405
Query: 84 SSSGS-GSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPGPEEAKRKLRILQRELQNVQ 142
G G G G + P G Q G + PPG + K
Sbjct: 1406 GERGPPGPGEGGIAPGEPGLPGLPGSPGPQ----GPVGPPGKKGEKG------------- 1448
Query: 143 VNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCPFRSSSQPPGRVLVQGARSEERRT 202
S AP P G+ SP + PPG + +G R
Sbjct: 1449 ---------------DSEDGAPGLP--GQPGSPGE---QGPRGPPGAIGPKGDR------ 1482
Query: 203 KSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLPGRAAPTGSEAQGPSAFVRMEKGIP 262
G P + G +G P S +G+P + GR G E + EKG P
Sbjct: 1483 ---GFPGPLGEAGEKGERGPPGPAGS---RGLPGVAGRPGAKGPEGPPGPTGRQGEKGEP 1536
Query: 263 ASPRCGSPTAMEIDKRGSPTPGTRSCLAPSLGLFGASLTMATEVAARVTSTGPHRPQDLA 322
P G P + G G + + P+ G GA+ G P L
Sbjct: 1537 GRP--GDPAVVGPAVAG--PKGEKGDVGPA-GPRGATGVQ-----------GERGPPGLV 1580
Query: 323 LTEPSGRARELEDLQPPEALVERQGQFLGSETSPAPERGGPRDGEPPGKMGKGYLPCGMP 382
L G + D + P L R G ++ P E+G P PPG +G P
Sbjct: 1581 LPGDPGPKGDPGD-RGPIGLTGRAGP--PGDSGPPGEKGDPGRPGPPGPVG--------P 1629
Query: 383 GSGEPEVGKRPEETTVSVQSAESSDSLSWSRLPRALASVGPEEARSGAPVGGGRWQLSDR 442
+ EVG++ +E L E GAP G R + ++
Sbjct: 1630 RGRDGEVGEKGDEGPPG---------------DPGLPGKAGERGLRGAP--GVRGPVGEK 1672
Query: 443 VEGGSPTLGLLGGSP-SAQPGTGNVEAGIPS--GRMLEPLPCWDAAKDLKEPQCPPGDR 498
+ G P GSP S+ P E G P GR+++ P A++ E PGDR
Sbjct: 1673 GDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGPPGRLVDTGP---GAREKGE----PGDR 1724
Score = 42.0 bits (97), Expect = 0.003
Identities = 124/523 (23%), Positives = 166/523 (31%), Gaps = 92/523 (17%)
Query: 24 GGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSPEEPRSPGGWRSGRRRLN 83
G G G + PP PG+ PG PP +S +EP G L
Sbjct: 2067 GERGEQGRDGPPG------LPGTPGPPG-------PPGPKVSVDEPGPGLSGEQGPPGLK 2113
Query: 84 SSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPGPEEAKRKLRILQRELQNVQV 143
+ G + ++GDR + G PG L E
Sbjct: 2114 GAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPG----------LPGERGMAGP 2163
Query: 144 NQKVGMFEAHIQAQSSAIQAPRSP--RLGRARSPSPCPFRSSSQPPGRVLVQGARSEERR 201
K G +Q PR P +G P P + P G G + E
Sbjct: 2164 EGKPG------------LQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGE 2211
Query: 202 TKSWGEQCPETSGTDS-----------GRKGGPSLCSSQVKKGMPPLPGRAAPTGSEAQG 250
T G +G G +G P L + G P PGR +G +
Sbjct: 2212 TGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGD- 2270
Query: 251 PSAFVRMEKGIPASPRCGSPTAMEIDKRGSPTPGTRSCLAP-SLGLFGASLTMATEVAAR 309
R G+P SP P + + + PG P + G GA +A ++
Sbjct: 2271 -----RGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGE 2325
Query: 310 VTSTGPHRPQDLALTEPSGRARELEDLQPPEALVERQGQFLGSETSPAPE--RGGPRDGE 367
+ G D L P G E P E G + +P P+ +G P G
Sbjct: 2326 PGAKG-----DRGLPGPRGEKGEAGRAGEPGDPGED-----GQKGAPGPKGFKGDPGVGV 2375
Query: 368 P--PGKMG----KGYLPCGMPG-SGEPEVGKRPEETTVSVQSAESSDSLSWSRLPRALAS 420
P PG G KG L G+PG G P V P +T + + S R LA
Sbjct: 2376 PGSPGPPGPPGVKGDL--GLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGE-----RGLAG 2428
Query: 421 VGPEEARSGAPVGGGRWQLSDRVEGGSPTLGLLGGSPSAQPGTGNVEAGIPSGRMLEPLP 480
E G P+G S G S G G PG E G P R + P
Sbjct: 2429 PPGREGIPG-PLGPPGPPGSVGPPGASGLKGDKGDPGVGLPGPRG-ERGEPGIRGEDGRP 2486
Query: 481 CWDAAKDLKEPQCPPGDRVGVQPGNSRVWQGTMEKAGLAWTRG 523
+ + L PPG R R +G + AGL +G
Sbjct: 2487 GQEGPRGLTG---PPGSR------GERGEKGDVGSAGLKGDKG 2520
Score = 39.7 bits (91), Expect = 0.013
Identities = 96/397 (24%), Positives = 136/397 (34%), Gaps = 70/397 (17%)
Query: 24 GGPGPSGSE--TPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSPEEPRSPGGWRSGRR- 80
G PGPSG PP R + PG + PG S + PP S + PG G R
Sbjct: 2416 GQPGPSGERGLAGPPGREGI--PGPLGPPGPPGS-VGPPGASGLKGDKGDPGVGLPGPRG 2472
Query: 81 -----RLNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAG----------TLSPPGPE 125
+ G ++ P + RG++ V +AG L PPGP
Sbjct: 2473 ERGEPGIRGEDGRPGQEGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPGPR 2532
Query: 126 EAK-----RKLRILQREL----QNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPS 176
AK R R L + N K E + S+ + R LG P
Sbjct: 2533 GAKGDMGERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKG-SAGLPGLRG-LLGPQGQPG 2590
Query: 177 PCPFRSSSQPPGRVLVQGARSE--------------ERRTK-SWGEQCPETSGTDSGRKG 221
PG+ V G R E ER K + G + ++G G
Sbjct: 2591 AAGIPGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKGERGVKGACGLDGEKGDKGEAGPPG 2650
Query: 222 GPSLCSSQVKKGMPPLPGRAAPTGSEAQ-GPSAFVRMEKGIPASPRCGSPTAMEIDKRGS 280
P L + + G P +PG++ G E GP ++G P P + +K
Sbjct: 2651 RPGLAGHKGEMGEPGVPGQSGAPGKEGLIGPKG----DRGFDGQP---GPKGDQGEKGER 2703
Query: 281 PTPGTRSCLAPSLGLFGASLTMATEVAARVTSTGPHRPQDLALTEPSGRARELEDLQPPE 340
TPG PS G G++ S GP P+ L + ++ E P E
Sbjct: 2704 GTPGIGGFPGPS-GNDGSA-----GPPGPPGSVGPRGPEGL-------QGQKGERGPPGE 2750
Query: 341 ALVERQGQFLGSETSPAPERGGPRDGEPPGKMGKGYL 377
+V G + E+G P P G+ G+ L
Sbjct: 2751 RVVGAPG--VPGAPGERGEQGRPGPAGPRGEKGEAAL 2785
Score = 37.7 bits (86), Expect = 0.051
Identities = 122/519 (23%), Positives = 162/519 (31%), Gaps = 108/519 (20%)
Query: 24 GGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSPEEPRSPGGWRSGRRRLN 83
G PG G + PP PG V PG+G P PGG +G +
Sbjct: 1878 GAPGILGPQGPPG------LPGPVGPPGQGF--------------PGVPGG--TGPKGDR 1915
Query: 84 SSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPGPEEAKRKLRILQRELQNVQV 143
+GS G G L G+R G PG +L E ++
Sbjct: 1916 GETGS-KGEQG-----------LPGER------GLRGEPGSVPNVDRLL----ETAGIKA 1953
Query: 144 NQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCPFRSSSQPPGRVLVQGARSEERRTK 203
+ + E ++ S + P R + S PPG+ G E
Sbjct: 1954 SALREIVETWDESSGSFLPVPERRRGPKGDS-------GEQGPPGKEGPIGFPGERGLKG 2006
Query: 204 SWGEQCPE-TSGTDSGRKG--GPS-LCSSQVKKGMPPLPGRAAPTGSEAQGPSAFVRMEK 259
G+ P+ G G +G GPS L K G+P LPGRA G + R EK
Sbjct: 2007 DRGDPGPQGPPGLALGERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEK 2066
Query: 260 ------------GIPASPRCGSPTAMEIDKRGSPTPGTRSCLAPSLGLFGASLTMAT--- 304
G+P +P P ++ P PG P GL GA +
Sbjct: 2067 GERGEQGRDGPPGLPGTPGPPGPPGPKVSV-DEPGPGLSGEQGPP-GLKGAKGEPGSNGD 2124
Query: 305 -----------------EVAARVTSTGPHRPQDLALTEPSGRARELEDLQPPEALVERQG 347
E R P P + + P G+ PP
Sbjct: 2125 QGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGP------ 2178
Query: 348 QFLGSETSPAPERGGPRDGEPPGKMGKGYLPCGMPG-SGEPEVGKRPEETTVSVQSAESS 406
+G P P G P P G G L G PG +G P G V +
Sbjct: 2179 --VGGHGDPGPP-GAPGLAGPAGPQGPSGLK-GEPGETGPPGRGLTGPTGAVGLPGPPGP 2234
Query: 407 DSLSWSRLPRALASVGPEEARSGAP-VGGGRWQLSDRVEGGSP-TLGLLG-----GSPSA 459
L + L E + GAP G + DR G P + GL G G P
Sbjct: 2235 SGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGP 2294
Query: 460 QPGTGNVEAGIPSGRMLEPLPCWDAAKDLKEPQCPPGDR 498
G G+P + + P A + EP GDR
Sbjct: 2295 TGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGA-KGDR 2332
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 48.9 bits (115), Expect = 2e-05
Identities = 114/486 (23%), Positives = 155/486 (31%), Gaps = 59/486 (12%)
Query: 20 MKSGGGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSPEEPRSPGG----- 74
M + G PGP+G+ P R PG + G P E P PG
Sbjct: 410 MGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPG----PRGERGEAGIPGVPGAKGEDG 465
Query: 75 --WRSGRRRLNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPGPEEAKRK-- 130
G N G+ P+ + G++ G P GP A +
Sbjct: 466 KDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPG 525
Query: 131 ---------LRILQRELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCPFR 181
+R + + K G + ++ P PR P P
Sbjct: 526 RDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKG 585
Query: 182 SSSQP--------PGRVLVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKG 233
+ P PG QG + T G P G D G G P +G
Sbjct: 586 NDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPG------PQG 639
Query: 234 MPPLPGRAAPTGSEAQGPSAFVRMEKGIPASPRCGSPTAMEIDKRGSPTPGTRSCLAPSL 293
+ LPG P G + + + G P +P G A +RG P LA +
Sbjct: 640 LQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPG-GKGDAGAPGERGPPG------LAGAP 692
Query: 294 GLFGASLTMATEVAARVTSTGPHRPQDLALTEP-SGRARELEDLQPPEALVERQGQFLGS 352
GL G + E + GP P A T G E L P ++ G+ G
Sbjct: 693 GLRGGAGPPGPE--GGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDK-GEPGGP 749
Query: 353 ETSPAPERGGPRDGEPPGKMGKGYLPCGMPGSGEPEVGKRPEETTVSVQSAESSDSLSWS 412
P + GPR P G +G P G PG + G+ + S
Sbjct: 750 GADGVPGKDGPRG--PTGPIGPPG-PAGQPG----DKGEGGAPGLPGIAGPRGSPGERGE 802
Query: 413 RLPRALASVGPEEARSGAPVG-GGRWQLSDRVEGGSP-TLGLLGGS-PSAQPGTGNV--E 467
P A ++G P G G R ++ EGG P G GGS P+ PG V E
Sbjct: 803 TGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGE 862
Query: 468 AGIPSG 473
G P G
Sbjct: 863 RGSPGG 868
Score = 45.1 bits (105), Expect = 3e-04
Identities = 141/553 (25%), Positives = 191/553 (34%), Gaps = 102/553 (18%)
Query: 24 GGPGPSGSETPPPPRRAVLSPGSVFSPG----RGASFL-FPPAESLSPEEPRSPGGWRSG 78
G PGP G P R PG+ + G RG+ PP + P SPG
Sbjct: 294 GAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGA---- 349
Query: 79 RRRLNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPGPEEAKRKLRILQREL 138
+ + + GS + P G AG PPGP
Sbjct: 350 KGEVGPAGSPGSNGAPGQRGEPGPQGH----------AGAQGPPGPPGI----------- 388
Query: 139 QNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCPFRSSSQPPGRVLVQGARSE 198
N K M A I P +P L AR P P P ++ P ++G E
Sbjct: 389 -NGSPGGKGEMGPAGI---------PGAPGLMGARGP-PGPAGANGAPG----LRGGAGE 433
Query: 199 ERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLPG----------RAAPTGSEA 248
+ + GE P ++G G P K G P PG R AP
Sbjct: 434 PGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGP 493
Query: 249 QGPSAFVRMEKGIPASPRCGSP-------TAMEIDKRGSP-TPGTRSCLAPSLGLFGA-- 298
GP+ + EKG PA R G+P A E + G P PG R + S G G+
Sbjct: 494 AGPNG-IPGEKG-PAGER-GAPGPAGPRGAAGEPGRDGVPGGPGMRG-MPGSPGGPGSDG 549
Query: 299 --SLTMATEVAARVTSTGPHRPQD----LALTEPSGR----ARELEDLQP----PEALVE 344
+ + R GP P+ + P G + E P P+
Sbjct: 550 KPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPG 609
Query: 345 RQGQFLGSETSPAPERGGPRDGE--PPGKMGKGYLP--CGMPG-SGEP-EVGKRPEETTV 398
+ G+ G + P P G G+ PPG G LP G PG +G+P E G + +
Sbjct: 610 KNGE-TGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAP 668
Query: 399 SVQSAESSDSLSWSRLPRALASVGPEEARSGA-PVG--GGRWQLSDRVEGGSPTLGLLGG 455
+ R P LA G R GA P G GG+ G+ L G
Sbjct: 669 GAPGGKGDAGAPGERGPPGLA--GAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQG 726
Query: 456 SPSAQPGTGNV----EAGIPSGRMLEPLPCWDAAKDLKEPQCPPGDRVGVQPGNSRVWQG 511
P + G G+ + G P G + +P D + P PPG QPG+ + G
Sbjct: 727 MPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGP--AGQPGD-KGEGG 783
Query: 512 TMEKAGLAWTRGT 524
G+A RG+
Sbjct: 784 APGLPGIAGPRGS 796
Score = 40.4 bits (93), Expect = 0.008
Identities = 71/256 (27%), Positives = 86/256 (33%), Gaps = 61/256 (23%)
Query: 24 GGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAESL-----SPEEPRSPGGWRSG 78
G PG SG PP P+ GS PG FP A L S P PG S
Sbjct: 843 GPPGGSGPAGPPGPQGVKGERGSPGGPGAAG---FPGARGLPGPPGSNGNPGPPGPSGSP 899
Query: 79 RRRLNSSSGSGSGSSGS-SVSSPSWAGRLRGDRQQVVAAGTLSPPGPEEAKRKLRILQRE 137
+ +G+ GS VS P +GD Q G+ GP A L I
Sbjct: 900 GKDGPPGPAGNTGAPGSPGVSGP------KGDAGQPGEKGSPGAQGPPGAPGPLGI---- 949
Query: 138 LQNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCPFRSSSQPPGRVLVQGARS 197
G+ A A + PR SP P + S PG + G R
Sbjct: 950 ---------AGITGARGLAGPPGMPGPRG-------SPGPQGVKGESGKPGANGLSGERG 993
Query: 198 EERRTKSWGEQ-CPETSGT--DSGRKGGPSLCSSQVKKGMPPLPGRAAPTGSEAQGPSAF 254
G Q P +GT + GR G P G LPGR G +
Sbjct: 994 PP------GPQGLPGLAGTAGEPGRDGNP---------GSDGLPGRDGSPGGKGD----- 1033
Query: 255 VRMEKGIPASPRCGSP 270
R E G P +P G+P
Sbjct: 1034 -RGENGSPGAP--GAP 1046
Score = 38.9 bits (89), Expect = 0.023
Identities = 31/101 (30%), Positives = 36/101 (35%), Gaps = 6/101 (5%)
Query: 24 GGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSPEEPRSPGGWRSGRRRLN 83
G G SG PP P+ G+ PGR + P P SPGG G R N
Sbjct: 984 GANGLSGERGPPGPQGLPGLAGTAGEPGRDGN----PGSDGLPGRDGSPGG--KGDRGEN 1037
Query: 84 SSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPGP 124
S G+ P GDR + AG PGP
Sbjct: 1038 GSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGP 1078
Score = 35.4 bits (80), Expect = 0.25
Identities = 134/550 (24%), Positives = 165/550 (30%), Gaps = 121/550 (22%)
Query: 24 GGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAE--SLSPEEPRSPGGWRSGRRR 81
G PGP+G PP P PGS SPG + PP E P P P G
Sbjct: 171 GYPGPAGPPGPPGPPGTSGHPGSPGSPG----YQGPPGEPGQAGPSGPPGPPG------- 219
Query: 82 LNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPGPEEAKRKLRILQRELQNV 141
+ SG P G RG G PG K R +
Sbjct: 220 --AIGPSGPAGKDGESGRPGRPGE-RGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKG 276
Query: 142 QVNQKVGMFEAHIQAQSSAIQAPRSPR-----LGRARSPSPCPFRSSS------------ 184
+ E + ++ A P PR GR P R +
Sbjct: 277 ETGAPGLKGENGLPGENGA-PGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPP 335
Query: 185 QPPGRVLVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLPG-RAAP 243
PPG G+ + G P ++G G++G P +G P PG +P
Sbjct: 336 GPPGTAGFPGSPGAKGEVGPAGS--PGSNGA-PGQRGEPGPQGHAGAQGPPGPPGINGSP 392
Query: 244 TGSEAQGPSAFVRMEKGIPASPRCGSPTAMEIDKRGSPTPGTRSCLAPSLGLFGASLTMA 303
G GP+ GIP +P + RG P P + AP GL G +
Sbjct: 393 GGKGEMGPA-------GIPGAPGL-------MGARGPPGPAGANG-AP--GLRGGAGEPG 435
Query: 304 TEVAARVTSTGPHRPQDLALTEPSGRARELEDLQP--------PEALVERQGQ-FLG--- 351
A R + P + + +D P P A ER F G
Sbjct: 436 KNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAG 495
Query: 352 -----SETSPAPERGGPRDGEPPGKMGK--------GYLPCGMPGS--GEPEVGKRPEET 396
E PA ERG P P G G+ G GMPGS G GK
Sbjct: 496 PNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPG 555
Query: 397 TVSVQSAESSDSLSWSR-LPRALASVGPEEARSGAPVGGGRWQLSDRVEGGSPTLGLLGG 455
+ S R P + GP + GAP G E G P G
Sbjct: 556 SQGESGRPGPPGPSGPRGQPGVMGFPGP-KGNDGAPGKNG--------ERGGPG----GP 602
Query: 456 SPSAQPGTGNVEAGIPSGRMLEPLPCWDAAKDLKEPQCPPGDRVGVQPGNSRVWQGTMEK 515
P PG N E G PQ PPG PG + G
Sbjct: 603 GPQGPPGK-NGETG---------------------PQGPPGP---TGPGGDKGDTGPPGP 637
Query: 516 AGLAWTRGTG 525
GL GTG
Sbjct: 638 QGLQGLPGTG 647
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 48.9 bits (115), Expect = 2e-05
Identities = 137/571 (23%), Positives = 185/571 (32%), Gaps = 100/571 (17%)
Query: 26 PGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSPEEP---RSP--GGWRSGRR 80
P P TPP P S P A PP +SP P RSP G + G+
Sbjct: 111 PTPKPIVTPPGPAAGESSAMEGMFPVHWAGRGSPPPALISPASPATQRSPGEGAQQPGKC 170
Query: 81 RLNSSSG-SGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLS------PP-------GPEE 126
+ SSG S G++ S+ + + AG+ Q V +G S PP PEE
Sbjct: 171 LVCPSSGNSERGTNTSAELALALAGKREMQGCQRVCSGDRSVRRRAHPPVHAPARSHPEE 230
Query: 127 AKR---------KLRILQRELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSP 177
A+ LR+ R + + + H A P G R+ P
Sbjct: 231 ARALALPAPTRVHLRLAARCVGRRRRERSDPPGSYHDPALGLRTPGPILEGRG-PRAAGP 289
Query: 178 CPFRSSS---QPPGRVLVQGARSEERRTKSWGEQCPETSGTD----SGRKGGPSLCSSQV 230
CP +++ G V G +RR + G+ S R PS+C
Sbjct: 290 CPANTAAVDKTQGGWRAVSGRAEAQRRAADHHSRLRTALGSGLRVCSSRPAAPSVCP--- 346
Query: 231 KKGMPPLPGRA-APTGSEAQGPSAFVRMEKGIPASPRCGSPTAMEIDKRGSPTPGTRSCL 289
+G PP PG + G+ A R PA R A +RG R+
Sbjct: 347 VRGPPPRPGTVRSQLGARANEGGGAPRP----PAGARVFGVWARGRLRRGCHKCADRAPR 402
Query: 290 APSLGLFGASLTMATEVAARVTSTGPHRPQDLALTEPSGRARE-----LEDLQPPEALVE 344
AP A T P P+ P+ R L+ L P +
Sbjct: 403 APKAAAKAAPAKRTARRRXXXXDTVPAAPEGAGAARPAAPLRPTSFSVLDILDPNKFNSR 462
Query: 345 RQGQFLGSETSP---APERGGP------RDGEPP-----------GKMGKGYLPCGMPGS 384
R+ L +P AP P G PP G G G P +
Sbjct: 463 RRRCVLLGPVAPAACAPCASAPCAPAPAASGRPPRAEELERRALAGAGGVGAAGAEPPNA 522
Query: 385 GEP-EVGKRPEETTVSVQ--------SAESSDSL------SWSRLPRALASVGPEEARSG 429
G+P + G+ T SA+S D + P A+ G EEAR G
Sbjct: 523 GDPFKAGEAETNDTNGYSSGGGGHSPSADSGDEVPDDEDDDEDEAPETEAARGAEEARGG 582
Query: 430 APVGGGRWQLSDRVEGGSPTLGLLGGSPSAQPGTGNVEAGIPSGRMLEPL---PCWDAAK 486
GGG +G + T A PG EA P R P+ P AA
Sbjct: 583 ---GGGLGARGSGCQGAAET--------DASPGATVDEAAAPGPRENSPVAPGPPGGAAA 631
Query: 487 DLKEPQCPPGDRVGVQPGNSRVWQGTMEKAG 517
P G +P R G+ K+G
Sbjct: 632 PGGAGTTPQGTATAAKPKRKRT--GSDSKSG 660
>gi|239749196 PREDICTED: hypothetical protein XP_002346951 [Homo
sapiens]
Length = 528
Score = 47.8 bits (112), Expect = 5e-05
Identities = 59/195 (30%), Positives = 73/195 (37%), Gaps = 30/195 (15%)
Query: 174 SPSPCPFRSSSQPPGRVLVQGARSEERRTKSWGEQCPETSGTDSG----RKGGPSLCSSQ 229
SP+ CP RS +L ARS RR + G PE S SG G P +
Sbjct: 189 SPASCPSRSCPSAAVFILAVAARSCSRRRRV-GTSGPEASTLSSGLLTCSAGEPPTTGGK 247
Query: 230 VKKGMPPLPGRAAPTGSEAQGPSAFVRMEKGI--PASPRCGSPTAMEIDKRGSPTPGTRS 287
+ G L AP + P +R G P SP G D RG+PTPG
Sbjct: 248 L-TGPARLRSSRAPPPARRPLPCESLRTPSGTAGPRSPASGP------DARGAPTPGR-- 298
Query: 288 CLAPSLGLFGASLTMATEVAARVTSTGPHRPQDLALTEPSGRARELEDLQPPEALVERQG 347
G + AT + GP RPQ L + S R R + P A+V R
Sbjct: 299 ------ARGGGASWSATPTT--IPGPGPPRPQLLVIPRTS-RCRLV-----PAAVVGRSS 344
Query: 348 QFLGSETSPAPERGG 362
+ PA RGG
Sbjct: 345 SVTIDHSRPASSRGG 359
>gi|239743276 PREDICTED: hypothetical protein XP_002342815 [Homo
sapiens]
Length = 528
Score = 47.8 bits (112), Expect = 5e-05
Identities = 59/195 (30%), Positives = 73/195 (37%), Gaps = 30/195 (15%)
Query: 174 SPSPCPFRSSSQPPGRVLVQGARSEERRTKSWGEQCPETSGTDSG----RKGGPSLCSSQ 229
SP+ CP RS +L ARS RR + G PE S SG G P +
Sbjct: 189 SPASCPSRSCPSAAVFILAVAARSCSRRRRV-GTSGPEASTLSSGLLTCSAGEPPTTGGK 247
Query: 230 VKKGMPPLPGRAAPTGSEAQGPSAFVRMEKGI--PASPRCGSPTAMEIDKRGSPTPGTRS 287
+ G L AP + P +R G P SP G D RG+PTPG
Sbjct: 248 L-TGPARLRSSRAPPPARRPLPCESLRTPSGTAGPRSPASGP------DARGAPTPGR-- 298
Query: 288 CLAPSLGLFGASLTMATEVAARVTSTGPHRPQDLALTEPSGRARELEDLQPPEALVERQG 347
G + AT + GP RPQ L + S R R + P A+V R
Sbjct: 299 ------ARGGGASWSATPTT--IPGPGPPRPQLLVIPRTS-RCRLV-----PAAVVGRSS 344
Query: 348 QFLGSETSPAPERGG 362
+ PA RGG
Sbjct: 345 SVTIDHSRPASSRGG 359
>gi|239508959 PREDICTED: hypothetical protein [Homo sapiens]
Length = 528
Score = 47.8 bits (112), Expect = 5e-05
Identities = 59/195 (30%), Positives = 73/195 (37%), Gaps = 30/195 (15%)
Query: 174 SPSPCPFRSSSQPPGRVLVQGARSEERRTKSWGEQCPETSGTDSG----RKGGPSLCSSQ 229
SP+ CP RS +L ARS RR + G PE S SG G P +
Sbjct: 189 SPASCPSRSCPSAAVFILAVAARSCSRRRRV-GTSGPEASTLSSGLLTCSAGEPPTTGGK 247
Query: 230 VKKGMPPLPGRAAPTGSEAQGPSAFVRMEKGI--PASPRCGSPTAMEIDKRGSPTPGTRS 287
+ G L AP + P +R G P SP G D RG+PTPG
Sbjct: 248 L-TGPARLRSSRAPPPARRPLPCESLRTPSGTAGPRSPASGP------DARGAPTPGR-- 298
Query: 288 CLAPSLGLFGASLTMATEVAARVTSTGPHRPQDLALTEPSGRARELEDLQPPEALVERQG 347
G + AT + GP RPQ L + S R R + P A+V R
Sbjct: 299 ------ARGGGASWSATPTT--IPGPGPPRPQLLVIPRTS-RCRLV-----PAAVVGRSS 344
Query: 348 QFLGSETSPAPERGG 362
+ PA RGG
Sbjct: 345 SVTIDHSRPASSRGG 359
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 47.4 bits (111), Expect = 6e-05
Identities = 78/355 (21%), Positives = 121/355 (34%), Gaps = 64/355 (18%)
Query: 59 PPAESLSPEEPRSPGGWRSGRRRLNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGT 118
PP E L P + PG S + + G SG T
Sbjct: 3623 PPEEGLWPHDEGGPGRHASAKEHRHGDHGRHSGRH------------------------T 3658
Query: 119 LSPPGPEEAKRKLRILQRELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPC 178
PG AK R L G EA +Q S+ AP P+ G+ PS
Sbjct: 3659 GEEPGRRAAKPHARDL-------------GRHEARPHSQPSS--APAMPKKGQPGYPSSA 3703
Query: 179 PFRSSSQPPGRVLVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLP 238
+ SQP R + ++ G+ G +L S + P L
Sbjct: 3704 EY---SQP------------SRASSAYHHASDSKKGSRQAHSGPAALQSKAEPQAQPQLQ 3748
Query: 239 GR-AAPTGSEAQGPSAFVRMEKGIPASPRCGSPTAMEIDKRGSPTPGTRSCLAPSLGLFG 297
GR AAP ++Q PS+ + IP+ P + + P ++ L
Sbjct: 3749 GRQAAPGPQQSQSPSS-----RQIPSGAASRQPQTQQQQQGLGLQPPQQALTQARLQQQS 3803
Query: 298 ASLTMATEVAARVTSTGPH-RPQDLALTEPSGRAR-ELEDLQPPEALVERQGQFLGSETS 355
T + AA + P P +P+G R E + A +QG+ ++ +
Sbjct: 3804 QPTTRGSAPAASQPAGKPQPGPSTATGPQPAGPPRAEQTNGSKGTAKAPQQGRAPQAQPA 3863
Query: 356 PAPERGGPRDGEPPGKMGKGYLPCGMPGSGEPEVGKRPEETTVSVQSAESSDSLS 410
P P G + G PG G P G PG+ V + + Q+ + ++++S
Sbjct: 3864 PGPGPAGVKAGARPG--GTPGAPAGQPGADGESVFSKILPGGAAEQAGKLTEAVS 3916
Score = 35.8 bits (81), Expect = 0.19
Identities = 58/260 (22%), Positives = 89/260 (34%), Gaps = 29/260 (11%)
Query: 20 MKSGGGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAE-----SLSPEEP----R 70
MK GGP G T P A +S + S + P + ++P
Sbjct: 1301 MKQNGGPLTPG--TSPTQLAAPVSFSTPTSSDSSGGRVIPDVRVTQHFAKETQDPLKLHS 1358
Query: 71 SPGGWRSGRRRLNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPGPEEAKRK 130
SP S + + G G+ ++ +P AG RG AG+ P P
Sbjct: 1359 SPASPSSASKEIGMPFSQGPGTPATTAVAPCPAGLPRGYMTPASPAGSERSPSPSSTAHS 1418
Query: 131 LRILQRELQNVQVNQKVGMFEAHIQAQS-SAIQAPRSPRLGRARSPSPC---PFRSSSQP 186
+ + + + A +A + P S G +P P + +SS P
Sbjct: 1419 YGHSPTTANYGSQTEDLPQAPSGLAAAGRAAREKPLSASDGEGGTPQPSRAYSYFASSSP 1478
Query: 187 PGRVLVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLPGRAAPTGS 246
P + + E T S G+ P + S + P+ S MP PG P+
Sbjct: 1479 P----LSPSSPSESPTFSPGKMGPRATAEFSTQTPSPAPASD-----MPRSPGAPTPSPM 1529
Query: 247 EAQGPSAFVRMEKGIPASPR 266
AQG R P++PR
Sbjct: 1530 VAQGTQTPHR-----PSTPR 1544
Score = 33.5 bits (75), Expect = 0.96
Identities = 52/223 (23%), Positives = 78/223 (34%), Gaps = 22/223 (9%)
Query: 163 APRSPRLGRARSPSPCPFRSSSQPPGRVLVQGARSEERRTKSWGEQCPETSGTDSGRKGG 222
APRS + SP+ P S ++ P G +ER G Q G+
Sbjct: 233 APRSKSQQQLHSPALSPAHSPAKQP-----LGKPDQERSRGPGGPQ----PGSRQAETAR 283
Query: 223 PSLCSSQVKKGMPPLPGRAAPTGSEAQGPSAFVRMEKGIPASPRCGSPTAMEIDKRGSPT 282
+ + PP GR +P + PS + P + + +A + T
Sbjct: 284 ATSVPGPAQAAAPPEVGRVSPQPPQPTKPST----AEPRPPAGEAPAKSATAVPAGLGAT 339
Query: 283 PGTRSCLAPSLGLFGASLTMATEVAARVTSTGPHRPQDLALTEPSGRARELEDLQPPEAL 342
T+ L L GASL A+ + S P G + + + +A
Sbjct: 340 EQTQEGLTGKLFGLGASLLTQ---ASTLMSVQPEADTQGQPAPSKGTPKIVFN----DAS 392
Query: 343 VERQGQFLGSETSPAPERGGPRDGEPPGKMGKGYLPCGMPGSG 385
E + LGS P P G EP +MG G P +P +G
Sbjct: 393 KEAGPKPLGSGPGPGPAPGAKT--EPGARMGPGSGPGALPKTG 433
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 45.4 bits (106), Expect = 2e-04
Identities = 73/272 (26%), Positives = 94/272 (34%), Gaps = 70/272 (25%)
Query: 161 IQAPRSPRLGRARSPSPCPFRSSSQPPGRVLVQGARSEERRTKSWGEQCPETSGTDSGRK 220
+Q P P+ + + CP G V R + K GEQ PE G G+
Sbjct: 710 VQGPAGPKGEKGDGCTACPSLQ-----GTVTDMAGRPGQPGPK--GEQGPEGVGRP-GKP 761
Query: 221 GGPSLCSSQVKKGMPPLPGRAAPTGSEAQGPSAFVRMEKGIPASPRC-GSPTAMEIDKRG 279
G P L Q G+ + G P G QGP E G P P G P RG
Sbjct: 762 GQPGLPGVQGPPGLKGVQGEPGPPGRGVQGPQG----EPGAPGLPGIQGLP-----GPRG 812
Query: 280 SPTPGTRSCLAPSLGLFGASLTMATEVAARVTSTGPHRPQDLALTEPSGRAREL------ 333
P P S G+ GA TGP P +++ P GR +
Sbjct: 813 PPGPTGEKGAQGSPGVKGA--------------TGPVGPPGASVSGPPGRDGQQGQTGLR 858
Query: 334 ----------EDLQPPEALVERQGQ------------FLGSETSPAPERGGPRDGEPPGK 371
E +P E QG ++GS P P+ G P PPG
Sbjct: 859 GTPGEKGPRGEKGEPGECSCPSQGDLIFSGMPGAPGLWMGSSWQPGPQ-GPPGIPGPPGP 917
Query: 372 MGKGYLPCGMPGS----GEP----EVGKRPEE 395
G L G+PG+ G+P E+G P E
Sbjct: 918 PGVPGLQ-GVPGNNGLPGQPGLTAELGSLPIE 948
Score = 35.0 bits (79), Expect = 0.33
Identities = 26/105 (24%), Positives = 37/105 (35%), Gaps = 9/105 (8%)
Query: 170 GRARSPSPCPFRSSSQPPGRVLVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQ 229
G P P PPG +G R + + G+Q G +G P
Sbjct: 1114 GEKGEPGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQ---------GFQGQPGFPGPP 1164
Query: 230 VKKGMPPLPGRAAPTGSEAQGPSAFVRMEKGIPASPRCGSPTAME 274
G P G P G +A+ S +R G+P SP P ++
Sbjct: 1165 GPPGFPGKVGSPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQ 1209
Score = 32.7 bits (73), Expect = 1.6
Identities = 124/541 (22%), Positives = 166/541 (30%), Gaps = 100/541 (18%)
Query: 24 GGPGPSGSETPPPPRRAVLSPGSVFSPG-------RGASFLF-------PPAESLSPEEP 69
G PG GS PP P PG+V SPG RG + L PP + P
Sbjct: 1036 GPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPGAT 1095
Query: 70 RSPG--GWRSGRRRLNSSSGSGSGSSGSSVSSPSWAGRL--------------RGDRQQV 113
PG G + R S+ G S P G +GD+
Sbjct: 1096 GPPGLPGIKGERGYTGSAGEKGEPGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQ 1155
Query: 114 VAAGTLSPPGPEEAKRKLRI-----LQRELQNVQVNQKVGMFEAHIQAQSSAIQAP---- 164
G PPGP K+ Q E + + G+ + IQ P
Sbjct: 1156 GQPGFPGPPGPPGFPGKVGSPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQGPAGLD 1215
Query: 165 ----RSPRLGRARSPSPCPFRSSSQPPGRVLVQGARSEERRTKSWGEQCPETSGTDSGRK 220
+ + G P P PPG G G+ P S G +
Sbjct: 1216 GLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSTGRPGAE 1275
Query: 221 GGPSLCSSQVKKGMPPLPGRAAPTGSEAQ-GPSAFVRM----------EKGIPASPRCGS 269
G P Q G P PG P G Q GP+ + E+G+ P
Sbjct: 1276 GEPGAMGPQ---GRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGATGERGLAGLPGQPG 1332
Query: 270 PTAMEIDKRGSPTPGTRSCLAPSLGLFGASLTMATEVAARVTSTGPHRPQ-DLALTEPSG 328
P G P P + G G + GP P+ D G
Sbjct: 1333 PP-------GHPGPPGEPGTDGAAGKEGP--------PGKQGFYGPPGPKGDPGAAGQKG 1377
Query: 329 RARELEDLQPPEALVERQGQFLGSETSPAPERGGPRDGEPPGKMGKGYLPCGMPGS---- 384
+A E P + PA ERG P PG G LP G+PGS
Sbjct: 1378 QAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHP---GAPGPSGSPGLP-GVPGSMGDM 1433
Query: 385 -GEPEVGKRPEETTVSVQSAESSDSLSWSRLPRALASV----GP--EEARSGAPVGGGRW 437
E+ + + + + + S + P +A+ GP ++ G P G
Sbjct: 1434 VNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKDGAPGRPGAPGSP 1493
Query: 438 QLSDRVEGGSPTLGLLG--GSPSAQPGTGNVEAGIPSGRMLEPLPCWDAAKDLKEPQCPP 495
L ++ G GL G G P + G++ GI L P PQ PP
Sbjct: 1494 GLPGQI-GREGRQGLPGVRGLPGTKGEKGDIGIGIAGENGLPGPP---------GPQGPP 1543
Query: 496 G 496
G
Sbjct: 1544 G 1544
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 45.4 bits (106), Expect = 2e-04
Identities = 108/443 (24%), Positives = 145/443 (32%), Gaps = 68/443 (15%)
Query: 28 PSGSETPPPPRRAVLSPGSV---------FSPGRGASFLFPPAESLSPEEPRSPGGWRSG 78
PS TPPP R +P SPGR + + + E+ SP
Sbjct: 401 PSPPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKV---TKHKGTEKRESPSPAPKP 457
Query: 79 RRRLNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPGPEEAKRKLRILQREL 138
R+ S S G ++ S + R QQ + S +E ++ +
Sbjct: 458 RKVELSESEEDKGGKMAAADSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVK---- 513
Query: 139 QNVQVNQKVGMFEAHIQAQSSAI-----QAPRSPRLGRARSPSPCPFR----SSSQPPGR 189
N +VG H ++S++ Q SPR R RSPSP P R S PP R
Sbjct: 514 -----NGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPR 568
Query: 190 VLVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLPGRAAPTGSEAQ 249
RRT + + S R P S +++ P P T S
Sbjct: 569 ---------RRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPP 619
Query: 250 GPSAFVRMEKGIPASPRCG-SPTAMEIDKRGSPTPGTRSCLAPSLGLFGASLTMATEVAA 308
P R P R SP + R SP RS S G+S + +T A
Sbjct: 620 PPKR--RASPSPPPKRRVSHSPPPKQ---RSSPVTKRRSPSLSSKHRKGSSPSRSTREAR 674
Query: 309 RVTSTGPHRPQDLALTEPSGRARELEDLQPPEALVERQGQFLGSETSPA--PERGGPRDG 366
H P P RA + PP SP+ P R R
Sbjct: 675 SPQPNKRHSP------SPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSRTP 728
Query: 367 EP--------PGKMGKGYLPCGMPGSGEPE-VGKRPEETTVSVQSAESSDSLSWS-RLPR 416
EP P + SG PE K+P VQS S S +WS +P
Sbjct: 729 EPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQS--QSPSTNWSPAVPV 786
Query: 417 ALA---SVGPEEARSGAPVGGGR 436
A + P R+ GGG+
Sbjct: 787 KKAKSPTPSPSPPRNSDQEGGGK 809
Score = 32.7 bits (73), Expect = 1.6
Identities = 66/299 (22%), Positives = 110/299 (36%), Gaps = 39/299 (13%)
Query: 122 PGPEEAKRKLRILQRELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSP---- 177
P PE+ +K + ++ + K + +++S + PR R+RS SP
Sbjct: 259 PSPEKNSKKEKEKEKTRPRSRSRSKS---RSRTRSRSPSHTRPRRRHRSRSRSYSPRRRP 315
Query: 178 CPFRSSSQ----PPGRVLVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKG 233
P R S PP R+ RR++S + +S + SG S S+
Sbjct: 316 SPRRRPSPRRRTPPRRM---PPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPK 372
Query: 234 MPPLPGRAAPTGSEAQGPSAFVRMEKGIPASPRCGSPTAMEIDKRGSPTP-----GTRSC 288
PP + P + PSA + P+ P P R SPTP +S
Sbjct: 373 KPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPKT-----RHSPTPQQSNRTRKSR 427
Query: 289 LAPSLGLFGASLTMATEVAARVTSTGPHRPQDLALT---EPSGRARELEDLQPPEALVER 345
++ S G +T R + + +P+ + L+ E G D R
Sbjct: 428 VSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKGGKMAAADSVQQRRQYRR 487
Query: 346 QGQFLGSETSPA-------PERGGPRDGEPPGKMGKGYLPCGMPGSGEPEVGKRPEETT 397
Q Q S++ + P+R ++GE + + + P S P KR +ET+
Sbjct: 488 QNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRR--RRHSP---SRSASPSPRKRQKETS 541
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 45.1 bits (105), Expect = 3e-04
Identities = 67/290 (23%), Positives = 99/290 (34%), Gaps = 37/290 (12%)
Query: 24 GGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSPEEPRSPGGWRSGRRRLN 83
G PG G PP + PG + PG PP P P PG
Sbjct: 694 GDPGNRGLPGPPGKKGQAGPPGVMGPPG-------PPG----PPGPPGPGCTMGLGFEDT 742
Query: 84 SSSGSGSGSSGSSVSSPSWAGRLRGDR--------QQVVAAGTLSPPGPEEAKRKLRILQ 135
SGS + +S P+ A L+G++ + + A + PPGP +++L
Sbjct: 743 EGSGSTQLLNEPKLSRPTAAIGLKGEKGDRGPKGERGMDGASIVGPPGPRGPPGHIKVLS 802
Query: 136 RELQNV--------QVNQKVGMFEAHIQAQSSAIQAPRSPR--LGRARSPSPCPFRSSSQ 185
L N+ + + VG PR P+ G P +
Sbjct: 803 NSLINITHGFMNFSDIPELVGPPGPDGLPGLPGFPGPRGPKGDTGLPGFPGLKGEQGEKG 862
Query: 186 PPGRVLVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLPGRAAPTG 245
PG +L + E K GE + G KG P + + G+P PGR G
Sbjct: 863 EPGAILTEDIPLERLMGKK-GEPGMHGAPGPMGPKGPP---GHKGEFGLPGRPGRPGLNG 918
Query: 246 SEAQ--GPSAFVRMEKGIPASPRCGSPTAMEIDKRGS--PTPGTRSCLAP 291
+ P ++ G+P P P I+ +G+ P P C P
Sbjct: 919 LKGTKGDPGVIMQGPPGLPGPPGPPGPPGAVINIKGAIFPIPVRPHCKMP 968
>gi|223633935 hypothetical protein LOC254427 [Homo sapiens]
Length = 435
Score = 44.7 bits (104), Expect = 4e-04
Identities = 63/238 (26%), Positives = 91/238 (38%), Gaps = 24/238 (10%)
Query: 28 PSGSETPPPPRRAVLSPG----------SVFSP---GRGASFLFPPAESLSPEEPRSPGG 74
P TP PPRR + +P SV +P + S E+LSP P G
Sbjct: 162 PPLPSTPDPPRRELRAPSPPVEHPRLLRSVPTPLVMAQKISERMAGNEALSPTSPFREG- 220
Query: 75 WRSGRRRLNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPGPEEAKRKLRIL 134
R G R ++ G SG G S P+ R +V G P ++ + +
Sbjct: 221 -RPGEWRTPAARGPRSGDPGPGPSHPAQPKAPRFPSNIIVTNGAAREPRRTLSRAAVSVQ 279
Query: 135 QRELQNV-QVNQKVGMFEAHIQAQSSAIQAPRSP-RLGRARS-PSPC-PFRSSSQPP-GR 189
+R Q + ++ G F A A A SP R+ R R P P R+ Q P G
Sbjct: 280 ERRAQVLATIHGHAGAFPAAGDAGEGAPGGGSSPERVARGRGLPGPAESLRAGGQAPRGP 339
Query: 190 VLVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLPGRAAPTGSE 247
L G S KS +G + GP+L S++ ++ PG P G++
Sbjct: 340 ALANGFPSAHEALKS-APSSFAPAGKSLCFRPGPALPSTRARQS---FPGPRQPNGAQ 393
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 44.3 bits (103), Expect = 5e-04
Identities = 39/133 (29%), Positives = 53/133 (39%), Gaps = 16/133 (12%)
Query: 166 SPRLGRARSPSPCPFRSSSQPPGRVLVQGARSEER--RTKSWGEQCPETSGTDSGRKGGP 223
SPRL R P P P +S PP GA + R RT +G G + GP
Sbjct: 754 SPRLVRRPPPGPAPAAASPGPPPPASPPGAPASPRAPRTSPYG-------GLPAAPLAGP 806
Query: 224 SLCSSQVKKGMPPLPGRAAPTGSEAQGPSAFVRMEKGIPASPRCGSPTAMEI-----DKR 278
+L + ++ + PL A GP+A R ++PR G A D+R
Sbjct: 807 ALPARRLSRASRPLSASQPSLPHGAPGPAASTRPASS--STPRLGPTPAARAAAPSPDRR 864
Query: 279 GSPTPGTRSCLAP 291
S +PG L P
Sbjct: 865 DSASPGAAGGLDP 877
Score = 34.7 bits (78), Expect = 0.43
Identities = 37/120 (30%), Positives = 43/120 (35%), Gaps = 20/120 (16%)
Query: 23 GGGPGPSGSETP-----------PPPRRAVLSPGSVFSPGRG-ASFLFPPAESLSPEEPR 70
GG PG S TP PP ++ P PG G A PP P E
Sbjct: 7 GGRPGESPGATPAPGPPPPPPPAPPQQQPPPPPPPAPPPGPGPAPPQHPPRAEALPPEAA 66
Query: 71 SPGGWRSGRRRLNSSSGSGSGSSGSSVSSPSWAGRL-RGDRQQVVAAGTLSPPGPEEAKR 129
GG R R +SS G +S + S G RG+ Q SP GPE R
Sbjct: 67 DEGGPRGRLRSRDSSCGRPGTPGAASTAKGSPNGECGRGEPQ-------CSPAGPEGPAR 119
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 44.3 bits (103), Expect = 5e-04
Identities = 101/405 (24%), Positives = 131/405 (32%), Gaps = 56/405 (13%)
Query: 44 PGSVFSPGRGASFLFPPAESLSP---EEPRSPGGWRSGRRRLNSSSGSGSGSSGSSVSSP 100
P S + RG + S SP ++ + GG R R++ S GSS
Sbjct: 144 PASCYRGHRGYRTKHWSSSSASPPPKKKKKKKGGHRRSRKKRRLESECSCGSSSPLRKKK 203
Query: 101 SWAGRLRGDRQQVVAAGTLSPPGPEEAKRKLRILQRELQNVQVNQKVGMFEAHIQAQSSA 160
+ R DR ++RK R R + + + H ++
Sbjct: 204 KSVKKHRRDRSD------------SGSRRKRRHRSRSSKCKRKEKNKEKKRPHTESPGRR 251
Query: 161 IQAPRSPRLGRARSPSPCPFRSSSQPPGRVLVQGARSEERRT---KSWGEQCPETSGTDS 217
S G + SPS S S+ P R L R E R+T +S G + P SG
Sbjct: 252 SHRHSS---GSSHSPSLSSHYSDSRSPSR-LSPKHRDEGRKTGSQRSSGSRSPSPSGGSG 307
Query: 218 G----RKGGPSLCSSQVKKGMPPLPGRAAPTGSEAQGPSAFVRMEKGIPASPRCGSPTAM 273
R GG S Q PG A + PS VR +K A+P +P A
Sbjct: 308 WGSPQRNGG----SGQRSGAHGGRPGSAHSPPDKPSSPSPRVR-DKAAAAAP---TPPA- 358
Query: 274 EIDKRGSPTPGTRSCLAPSLGLFGASLTMATEVAARVTSTGPHRPQDLALTEPSGRAREL 333
RG +P RS APS G A R R + + P R R
Sbjct: 359 ----RGKESPSPRS--APSSQ--GRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRR 410
Query: 334 EDLQPPEALVERQGQFLGSETS--------PAPERGGPRDGEPPGKMGKGYLPCGMPGSG 385
PP + S S P PE G R GK K P P S
Sbjct: 411 PRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARPAST 470
Query: 386 EPEVGKR-----PEETTVSVQSAESSDSLSWSRLPRALASVGPEE 425
P G PE + S S S SR P S E+
Sbjct: 471 SPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAEK 515
Score = 33.1 bits (74), Expect = 1.3
Identities = 27/78 (34%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 24 GGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSPEEPRSPGGWRSGRRRLN 83
GG G E PP R A SP SPG P +S S P W S R
Sbjct: 452 GGHGKRAKERPPRARPASTSP----SPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSK 507
Query: 84 SSSGSGSGSSGSSVSSPS 101
S S S S SPS
Sbjct: 508 SRSRSAEKRPHSPSRSPS 525
>gi|22726201 inositol polyphosphate multikinase [Homo sapiens]
Length = 416
Score = 43.9 bits (102), Expect = 7e-04
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 43/200 (21%)
Query: 699 CLDRLMVDVLRPFVPAYHG---DVVKDGERYNQMDDLLADFDSPCVMDCKMGIRTYLEEE 755
C D ++++ LR ++P Y+G + Y +++D+ F+ PC+MD K+G ++Y
Sbjct: 98 CFDGVLLE-LRKYLPKYYGIWSPPTAPNDLYLKLEDVTHKFNKPCIMDVKIGQKSY---- 152
Query: 756 LTKARKKPSLRKDMYQKMIEVDPEAPTEEEKAQRAVTKPRYMQWRETISSTATLGFRIEG 815
DP A EK Q+ V+K M+ LG R+
Sbjct: 153 ---------------------DPFA--SSEKIQQQVSKYPLME----EIGFLVLGMRVYH 185
Query: 816 IKKED-GTVNRDFKKTKTREQVTEAFREFTKGNHNILIAYRDRLKA-IRTTLEVSPFFKC 873
+ + T N+ + ++ T+E + + F HN +D + A I+ ++ +F+
Sbjct: 186 VHSDSYETENQHYGRSLTKETIKDGVSRFF---HNGYCLRKDAVAASIQKIEKILQWFEN 242
Query: 874 HEVI---GSSLLFIHDKKEQ 890
+ + SSLLF+++ Q
Sbjct: 243 QKQLNFYASSLLFVYEGSSQ 262
>gi|112821681 G protein-regulated inducer of neurite outgrowth 1
[Homo sapiens]
Length = 1008
Score = 43.9 bits (102), Expect = 7e-04
Identities = 96/394 (24%), Positives = 147/394 (37%), Gaps = 69/394 (17%)
Query: 10 SLVIMNSANEMKSGGGPGPSG--SETPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSPE 67
S V A+ SG SG +ET P + +PG GA L E+
Sbjct: 615 SPVTTTKADPRASGKAQPQSGGKAETKLPGQEGAAAPGEA-----GAVCL--KKETPQAS 667
Query: 68 EPRSPGGWRSGRRRLNSSSGSGSGSS-GSSVSSPSWAGRLRGDRQQVVAAGTLSPPGPEE 126
E PG S R+ +SG G S G + S+PS + V +L P
Sbjct: 668 EKVDPG---SCRKAEPLASGKGEPVSLGKADSAPS--RKTESPSLGKVVPLSLEKTKPSS 722
Query: 127 AKRKLRILQRELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGR------ARSPSPCPF 180
+ R+L ++ L + + + E ++ ++ + + + LG+ SPCP
Sbjct: 723 SSRQLD--RKALGSARSPEGARGSEGRVEPKAEPVSSTEASSLGQKDLEAAGAERSPCP- 779
Query: 181 RSSSQPPGRVLVQGARSEERRTK--SWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLP 238
+++ PPG R+ + TK SW P D+G + G C S M P
Sbjct: 780 EAAAPPPG------PRTRDNFTKAPSWEASAPPPPREDAGTQAGAQACVSVAVSPMSPQD 833
Query: 239 GRAAPTGSEAQGPSAFVRMEKGIPASPRCGSP-----TAMEIDKRGSPT------PGTRS 287
G G SAF A+PR SP +++ + T P T
Sbjct: 834 G---------AGGSAF-----SFQAAPRAPSPPSRRDAGLQVSLGAAETRSVATGPMTPQ 879
Query: 288 CLAPSLGLFGASLTMATEVAARVTSTGPHRP-QDLALTEPS------GRARELEDL-QPP 339
AP + + +AA V P P +D++ E G A E+E L
Sbjct: 880 AAAPP-AFPEVRVRPGSALAAAVAPPEPAEPVRDVSWDEKGMTWEVYGAAMEVEVLGMAI 938
Query: 340 EALVERQGQFLGSETSPAPERGGPRDGEPPGKMG 373
+ +ERQ + G + +PAP P PG+ G
Sbjct: 939 QKHLERQIEEHGRQGAPAPP---PAARAGPGRSG 969
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 43.1 bits (100), Expect = 0.001
Identities = 106/406 (26%), Positives = 144/406 (35%), Gaps = 77/406 (18%)
Query: 19 EMKSGGGPGPSGSETP---PPPRRAVLSPGSVFSPGRGASFLFPPAESLSPEEPRSPGGW 75
E+ S GG G + P P PR A SP PGR A+ L S+ +E PGG
Sbjct: 1009 ELSSIGGGGRAARRPPEGHPTPRPA--SP----EPGRVATVL----ASVKHKEAIGPGGE 1058
Query: 76 RSGRRRLNSSSGSG------SGSSGSSVSSP---SWAGRLRGDRQQVVAAGTLSPP-GPE 125
RRR S +G G S+ P GR R AG PP
Sbjct: 1059 VVNRRRTLSGPVTGLLATARRGPGESADPGPFVEDGTGRQRPRGPSKGEAGVEGPPLAKV 1118
Query: 126 EAKRKLRILQRELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCPFRSSSQ 185
EA L+ R QN Q N K I +S ++ R P+ + R P P
Sbjct: 1119 EASATLKRRIRAKQNQQENVK------FILTESDTVK--RRPK-AKEREAGPEP-----P 1164
Query: 186 PPGRVLVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLPGRAAPTG 245
PP V G + RR S PE + P+ + +PPLP P
Sbjct: 1165 PPLSVYHNGTGTVRRRPASEQAGPPELPPPPPPAEPPPTDLAH-----LPPLP----PPE 1215
Query: 246 SEAQGPSAFVRMEKGIPASPRCGSPTAMEIDK-RGSPTPGTRSCLAPSLGLFGASLTMAT 304
EA+ P+ P SP+ + K +GSPTP ++ P G + A
Sbjct: 1216 GEARKPAK-------PPVSPK--PVLTQPVPKLQGSPTPTSKKVPLPGPG--SPEVKRAH 1264
Query: 305 EVAARVTSTGPHRPQDLALTEPSGRARELEDLQPPEALVERQGQFLGSETSPAPERGGPR 364
V+ P P T P +P +A+ G +P+P R P
Sbjct: 1265 GTPPPVSPKPPPPP-----TAP----------KPVKAVAGLPSGSAGPSPAPSPARQPPA 1309
Query: 365 D-GEPPG-KMGKGYLPCGMPGSGEP--EVGKRPEETTVSVQSAESS 406
+PPG G P P G P V +P + +A ++
Sbjct: 1310 ALAKPPGTPPSLGASPAKPPSPGAPALHVPAKPPRAAAAAAAAAAA 1355
>gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo
sapiens]
Length = 321
Score = 43.1 bits (100), Expect = 0.001
Identities = 49/168 (29%), Positives = 67/168 (39%), Gaps = 18/168 (10%)
Query: 344 ERQGQFLGSETSPAPERGG--PRDGEPPGKMGKGYLPCGMPGSGEPEVGKRPEETTVSVQ 401
+ +GQ L S +PE G R G+P + + L PGSGE V + ++TV
Sbjct: 138 QARGQRLTSRGRESPEATGVPERRGDPETRRNRKSLT---PGSGEFGVRSQSCDSTVP-- 192
Query: 402 SAESSDSLSWSRLPRALASVGPEEARSGAPVGGGRWQLSDRVEGGSPTL-----GLLGGS 456
ES + W++ + GP A G GRW + G+ T L +
Sbjct: 193 --ESLERALWAQSSQLAG--GPGLAPRPGASGRGRWVSAPLPPKGTETFFCVLPSALRAA 248
Query: 457 PSAQPGTGNVEAGIPSGRMLEPLPCWDAAKDLKEPQCPPGDRVGVQPG 504
S P G E P R L P P A + P+CPPG PG
Sbjct: 249 LSCGPSWG--EDSGPRHRELRPDPDSRRASAERSPRCPPGSPRKAGPG 294
>gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo
sapiens]
Length = 321
Score = 43.1 bits (100), Expect = 0.001
Identities = 49/168 (29%), Positives = 67/168 (39%), Gaps = 18/168 (10%)
Query: 344 ERQGQFLGSETSPAPERGG--PRDGEPPGKMGKGYLPCGMPGSGEPEVGKRPEETTVSVQ 401
+ +GQ L S +PE G R G+P + + L PGSGE V + ++TV
Sbjct: 138 QARGQRLTSRGRESPEATGVPERRGDPETRRNRKSLT---PGSGEFGVRSQSCDSTVP-- 192
Query: 402 SAESSDSLSWSRLPRALASVGPEEARSGAPVGGGRWQLSDRVEGGSPTL-----GLLGGS 456
ES + W++ + GP A G GRW + G+ T L +
Sbjct: 193 --ESLERALWAQSSQLAG--GPGLAPRPGASGRGRWVSAPLPPKGTETFFCVLPSALRAA 248
Query: 457 PSAQPGTGNVEAGIPSGRMLEPLPCWDAAKDLKEPQCPPGDRVGVQPG 504
S P G E P R L P P A + P+CPPG PG
Sbjct: 249 LSCGPSWG--EDSGPRHRELRPDPDSRRASAERSPRCPPGSPRKAGPG 294
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 43.1 bits (100), Expect = 0.001
Identities = 133/620 (21%), Positives = 202/620 (32%), Gaps = 89/620 (14%)
Query: 63 SLSPEEPRSPGGWRSGRRRLNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPP 122
S SP+ P GW R + S SP+ GR R + G
Sbjct: 534 SRSPQRP----GWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRS--RTPARRGRSRSR 587
Query: 123 GPEEAKRKLRILQRELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCPFRS 182
P + + R R + + G + A+ + R R+RSP+ RS
Sbjct: 588 TPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRS 647
Query: 183 SSQPPGRVLVQGARSEERRTKSWGEQCPETSGTDSGR-------------KGGPSLCSSQ 229
S+ P R +R+ RR +S SG R + G S S
Sbjct: 648 RSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSL 707
Query: 230 VKKGM--PPLPGRAAPTGSEAQGPSAFVRMEKGIPASPRCGSPTAMEIDKR--------- 278
V++G P R +GS ++ R K + R S ++ E+ K
Sbjct: 708 VRRGRSHSRTPQRRGRSGSSSE------RKNKSRTSQRRSRSNSSPEMKKSRISSRRSRS 761
Query: 279 -GSPTPGTRSCLAPSLGLFGAS--LTMATEVAARVTSTGPHRPQDLALTEPSGRARELED 335
SP +S L+ L G+S ++ R + +G +P+ + T P R
Sbjct: 762 LSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPPRRSRSGSSQPKAKSRTPP--RRSRSSS 819
Query: 336 LQPPEALVERQGQFLGSETSPAPERGGPRDGEPPGKMGKGYLPCGMPGSGEPE----VGK 391
PP+ + + S +SP P+ + G PP + G P S P+
Sbjct: 820 SPPPKQKSKTPSRQSHSSSSPHPK---VKSGTPP-RQGSITSPQANEQSVTPQRRSCFES 875
Query: 392 RPEETTVSVQSAESSDSLSWSRLPRALASVGPEE--ARSGAPVGGGRWQLSDRVEGGSPT 449
P+ S S S S S PR +S P + +RS +P + +S R
Sbjct: 876 SPDPELKS--RTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQPKVKAIISPRQR----- 928
Query: 450 LGLLGGSPSAQPGTGNVEAGIPSGRMLEPLPCWDAAKDLKEPQCPPGDRVGVQPGNSRVW 509
S S+ P V + R PC +++ P G +++V
Sbjct: 929 ----SHSGSSSPSPSRVTSRTTPRRSRSVSPC----SNVESRLLPRYSHSGSSSPDTKVK 980
Query: 510 QGTMEKAGLAWTRGTGVQSEGTWESQRQDSDALPSPELLPQDPDKPFLRKACSPSNIPAV 569
T + Q P P++ Q P P L + SP P
Sbjct: 981 PETPPR-------------------QSHSGSISPYPKVKAQTPPGPSLSGSKSP--CPQE 1019
Query: 570 IITDMGTQE-DGALEETQGSPRGNLPLRK-LSSSSASSTGFSSSYEDSEEDISSDPERTL 627
D Q G+L G P SS G S + D D SS R
Sbjct: 1020 KSKDSLVQSCPGSLSLCAGVKSSTPPGESYFGVSSLQLKGQSQTSPDHRSDTSSPEVRQS 1079
Query: 628 DPNSAFLHTLDQQKPRVSKS 647
S L + Q P+ +S
Sbjct: 1080 HSESPSLQSKSQTSPKGGRS 1099
Score = 40.4 bits (93), Expect = 0.008
Identities = 68/277 (24%), Positives = 98/277 (35%), Gaps = 58/277 (20%)
Query: 46 SVFSPGRGASFLFPPAESLSPEEPRSPGGWRSGRRRLNSSSGSGSGSSGSSVSSPSWAGR 105
SV +PG S + P S ++P + + + R +SSS S S SS SS SS S +
Sbjct: 2495 SVPAPGVPHSDVGEPPASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSS 2554
Query: 106 LRGDRQQVVAAGTL-------------------------SPPGPEEAKRKLRILQRELQN 140
G +L PP P AKRK R +
Sbjct: 2555 SSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSS 2614
Query: 141 VQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPC---------PFRSSSQPPGRVL 191
+ + + SS+ + S + SPSP P PPG
Sbjct: 2615 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPG--- 2671
Query: 192 VQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMP-PLPGRAAPTGSEAQG 250
ERR++S + P S DS SL S V++ P P P S ++
Sbjct: 2672 -------ERRSRS--PRKPIDSLRDS-----RSLSYSPVERRRPSPQPSPRDQQSSSSER 2717
Query: 251 PSAFVRMEKGIPASP----RCGSPTAMEIDKRGSPTP 283
S R ++G SP R +P+ + R S +P
Sbjct: 2718 GSR--RGQRGDSRSPSHKRRRETPSPRPMRHRSSRSP 2752
Score = 39.3 bits (90), Expect = 0.018
Identities = 74/285 (25%), Positives = 101/285 (35%), Gaps = 55/285 (19%)
Query: 182 SSSQPPGRVLVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLPGRA 241
SS P V G S + + + P T R+ S S ++K G+P P R
Sbjct: 1383 SSELSPDAVEKAGMSSNQSISSPVLDAVPRTPS----RERSSSASSPEMKDGLPRTPSRR 1438
Query: 242 APTGSE------AQGPS--AFVRMEKGIPASPRCGSPTAMEIDKRGSP-----TPGTRS- 287
+ +GS + PS + G+ PR S E D P TP RS
Sbjct: 1439 SRSGSSPGLRDGSGTPSRHSLSGSSPGMKDIPRTPSRGRSECDSSPEPKALPQTPRPRSR 1498
Query: 288 ----------CLAPSLGLFGASLTMATEVAARVTSTGPHRPQDLALTEPSGRARELEDLQ 337
CL P G+ ++ + AR L SG ++EL D++
Sbjct: 1499 SPSSPELNNKCLTPQRERSGSESSVDQKTVART---------PLGQRSRSGSSQEL-DVK 1548
Query: 338 PPEALVERQGQFLGSETSP-------APERGGPRDGEPPGKMGKGYLPCGMPGSG-EPEV 389
P + ER S++SP P R R G P K L SG PEV
Sbjct: 1549 PSASPQERS----ESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSPRRSRSGSSPEV 1604
Query: 390 GKRPEETTVSVQSAESSDSLSWSRLPRALASVGPEEARSGAPVGG 434
+P QS S + PRAL P +RSG+ G
Sbjct: 1605 KDKP-RAAPRAQSGSDSSPEPKAPAPRAL----PRRSRSGSSSKG 1644
Score = 37.0 bits (84), Expect = 0.087
Identities = 75/301 (24%), Positives = 113/301 (37%), Gaps = 48/301 (15%)
Query: 21 KSGGGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSPE--EPRSPGGWRSG 78
+SG P P R S V R A P A+S S EP++P
Sbjct: 1578 RSGSSPEVDSKSRLSPRRSRSGSSPEVKDKPRAA----PRAQSGSDSSPEPKAPAPRALP 1633
Query: 79 RRRLNSSSGSGSG----SSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPGPEEAKRKLRIL 134
RR + SS G G S S+ SSP + R R+ G+ S P P+ R
Sbjct: 1634 RRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTARR-----GSRSSPEPKTKSRTPPRR 1688
Query: 135 QRELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSP---SPCPF---------RS 182
+ + ++ +K + A SS R+P R RSP SP P RS
Sbjct: 1689 RSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHR-RSPSVSSPEPAEKSRSSRRRRS 1747
Query: 183 SSQPPGRVL-------------VQGARSEERRTKSWGEQCPETSGT--DSGRKGGPSLCS 227
+S P + +Q +RS RR K+ + + SG+ + R+ S
Sbjct: 1748 ASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSR 1807
Query: 228 SQVKKGMPPLPGRAAPTGSEAQGPSAFVRMEKGIPASPRCGSPTAMEIDK-RGSPTPGTR 286
S+V + G + + + + R +G +P PT+ + + R SP P R
Sbjct: 1808 SRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTP----PTSRKRSRSRTSPAPWKR 1863
Query: 287 S 287
S
Sbjct: 1864 S 1864
Score = 34.7 bits (78), Expect = 0.43
Identities = 158/690 (22%), Positives = 225/690 (32%), Gaps = 126/690 (18%)
Query: 29 SGSETPPPPRRAVLSPGSVF--SPGRGASFLFPPAESLSPEEPRSPGGWRSGRRR---LN 83
S S TPP RR S + R S L S S PR+ G RS R +
Sbjct: 2018 SRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRS-RTPRTARGKRSLTRSPPAIR 2076
Query: 84 SSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGT----------LSP--------PGPE 125
S SGS S S ++P G R VA + +SP PG
Sbjct: 2077 RRSASGSSSDRSRSATPPATRNHSGSRTPPVALNSSRMSCFSRPSMSPTPLDRCRSPGML 2136
Query: 126 EAKRKLRILQRELQN------------VQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRAR 173
E R LQ + +Q+ + E H AQS A + LG AR
Sbjct: 2137 EPLGSSRTPMSVLQQAGGSMMDGPGPRIPDHQRTSVPENH--AQSRIALALTAISLGTAR 2194
Query: 174 SPSPCPFRS----SSQPPGRVLVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQ 229
P SQ P V + R+ + + P S +L S++
Sbjct: 2195 PPPSMSAAGLAARMSQVPAPVPLMSLRTAP--AANLASRIPAASAA------AMNLASAR 2246
Query: 230 VKKGMPPLPGRAAPTGSEAQGPSAFVRMEKGIP-----------ASPRCGSPTAMEIDKR 278
P +P A ++++ P+A M P A PR +PTA ++
Sbjct: 2247 T----PAIP--TAVNLADSRTPAAAAAMNLASPRTAVAPSAVNLADPR--TPTAPAVNLA 2298
Query: 279 GSPTPGTRSCLA------PSLGLFGASLTMATEVAARVTSTGPHRPQDLALTEPSGRARE 332
G+ TP + L+ P S + + A GP A +G +R
Sbjct: 2299 GARTPAALAALSLTGSGTPPTAANYPSSSRTPQAPASANLVGPRSAHATAPVNIAG-SRT 2357
Query: 333 LEDLQPPEALVERQGQFLGSE--TSP-----APERGGPRDGEPPGKMGKGYLPCGMPGSG 385
L P R L TSP A ER R P + P P
Sbjct: 2358 AAALAPASLTSARMAPALSGANLTSPRVPLSAYERVSGRTSPPLLDRARSRTPPSAPSQS 2417
Query: 386 EPEVGKRPEETTVSVQSAESSDSLSWSRLPRALASVGPEEARSGAPVGGGRWQLSDRVEG 445
+ P S+ + S S LP A ++ RS P SD+
Sbjct: 2418 RMTSERAPSP------SSRMGQAPSQSLLPPA-----QDQPRSPVPSA-----FSDQSRC 2461
Query: 446 GSPTLGLLGGSPSAQPG---TGNVEAGIPSGRMLEPLPCWDAAKDLKEPQCPPGDRVGVQ 502
+ GS S G T AG +G + P P + D+ EP G + Q
Sbjct: 2462 LIAQTTPVAGSQSLSSGAVATTTSSAGDHNGMLSVPAPGVPHS-DVGEPPASTGAQ---Q 2517
Query: 503 PGNSRVWQGTMEKAGLAWTRGTGVQSEGTWESQRQDSDALPSPE-----LLPQDPDKPFL 557
P Q E+ + + + S + S S + S LP P+ L
Sbjct: 2518 PSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVA-L 2576
Query: 558 RKACSPSNIPAVIITDMGTQEDGALEETQGSPRGNLPL-RKLSSSSASSTGFSSSYEDSE 616
++ SP+ P + + G P P RK SSS+SS+ SSS S
Sbjct: 2577 KRVPSPTPAPKEAVRE-------------GRPPEPTPAKRKRRSSSSSSSSSSSSSSSSS 2623
Query: 617 EDISSDPERTLDPNSAFLHTLDQQKPRVSK 646
SS + +S+ + P +K
Sbjct: 2624 SSSSSSSSSSSSSSSSSSSSSSSSSPSPAK 2653
Score = 34.3 bits (77), Expect = 0.56
Identities = 147/686 (21%), Positives = 232/686 (33%), Gaps = 124/686 (18%)
Query: 29 SGSETPP-------PPRRAVLSPGSVFSPGRGASFLFPPAESLSPEEPRSPGGWRSGRRR 81
SGS +P PPR++ GS+ SP PP SLS + P +S
Sbjct: 970 SGSSSPDTKVKPETPPRQS--HSGSI-SPYPKVKAQTPPGPSLSGSKSPCPQE-KSKDSL 1025
Query: 82 LNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPGPEEAKRKLRILQRELQNV 141
+ S GS S +G S+P Q+ SP + + +
Sbjct: 1026 VQSCPGSLSLCAGVKSSTPPGESYFGVSSLQLKGQSQTSPDH-----------RSDTSSP 1074
Query: 142 QVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCPFRSSSQP---------PGRVLV 192
+V Q +H ++ S ++ SP+ GR+RS SP +S P +L
Sbjct: 1075 EVRQ------SHSESPSLQSKSQTSPKGGRSRSSSPVTELASRSPIRQDRGEFSASPMLK 1128
Query: 193 QGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLPGRAAPTGSEAQGPS 252
G E+ R +S P + S+ K +PP A + S
Sbjct: 1129 SGMSPEQSRFQSDSSSYPTVDSNSLLGQSRLETAESKEKMALPPQEDATASPPRQKDKFS 1188
Query: 253 AFV---RMEKGI--------PASPRCGSPTAMEIDKRGSPTPGT------RSCLAPSLGL 295
F R E + P R G+ ++ E ++ S P + + S
Sbjct: 1189 PFPVQDRPESSLVFKDTLRTPPRERSGAGSSPETKEQNSALPTSSQDEELMEVVEKSEEP 1248
Query: 296 FGASLT-MATEVAARVTSTGPHRPQ-------DLALTEPSGRARELEDLQPPEALVERQG 347
G L+ +++E+ TS P+ L L + +A LE ++ P G
Sbjct: 1249 AGQILSHLSSELKEMSTSNFESSPEVEERPAVSLTLDQSQSQA-SLEAVEVPSMASSWGG 1307
Query: 348 QFLGSE-----TSPAPER--GGP---RDGEPPG-KMGKGYLPCGMPGSGEPEVGKRPEET 396
E SP E G P R+ P G +M G+ P + + +
Sbjct: 1308 PHFSPEHKELSNSPLRENSFGSPLEFRNSGPLGTEMNTGFSSEVKEDLNGPFLNQLETDP 1367
Query: 397 TVSV--QSAESSDSLSWSRLPRALASVGPEEARSGAPVGGGRWQLSDRVEGGSPTLGLLG 454
++ + QS SS S P A+ G +S SP L +
Sbjct: 1368 SLDMKEQSTRSSGHSSSELSPDAVEKAG----------------MSSNQSISSPVLDAVP 1411
Query: 455 GSPSAQPGTGNVEAGIPSGRMLEPLPCWDAAKDLKEPQCPPGDRVGVQPGNSRVWQGTME 514
+PS + + S M + LP + + R G PG R GT
Sbjct: 1412 RTPSRER-----SSSASSPEMKDGLPRTPSRR----------SRSGSSPG-LRDGSGTPS 1455
Query: 515 KAGLAWTRGTGVQSEGTWESQRQDSDALPSPELLPQDPDKPFLRKACSPSNIPAVIITDM 574
+ L+ + T R + D+ P P+ LPQ P +P R SP +
Sbjct: 1456 RHSLSGSSPGMKDIPRTPSRGRSECDSSPEPKALPQTP-RPRSRSPSSPELNNKCLTPQ- 1513
Query: 575 GTQEDGALEETQGSPRGNLPLRKLSSSSASS----TGFSSSYEDSEEDISSDP------- 623
+ G+ PL + S S +S +S E SE D S D
Sbjct: 1514 -RERSGSESSVDQKTVARTPLGQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTP 1572
Query: 624 --ERTLDPNSAFLHTLDQQKPRVSKS 647
+R+ +S + + + PR S+S
Sbjct: 1573 LRQRSRSGSSPEVDSKSRLSPRRSRS 1598
Score = 33.5 bits (75), Expect = 0.96
Identities = 72/338 (21%), Positives = 113/338 (33%), Gaps = 46/338 (13%)
Query: 163 APRSPRLGRARSPSPCPFRSSSQPPGRVLVQGARSEER---------RTKSWGEQCPETS 213
AP R+ R+PSP Q P + L+ A+ + R +++ Q +
Sbjct: 2413 APSQSRMTSERAPSPSS--RMGQAPSQSLLPPAQDQPRSPVPSAFSDQSRCLIAQTTPVA 2470
Query: 214 GTDSGRKGGPSLCSSQV--KKGMPPLPGRAAP--------TGSEAQGPSAFVRMEKGIPA 263
G+ S G + +S GM +P P + AQ PSA ++ PA
Sbjct: 2471 GSQSLSSGAVATTTSSAGDHNGMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQ---PA 2527
Query: 264 SPRCGSPTAMEIDKRGSPTPGTRSCLAPSLGLF----GASLTMATEVAA-RVTSTGPHRP 318
R S ++ S + + S + S G+SL + EVA RV S P
Sbjct: 2528 KERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPK 2587
Query: 319 QDLALTEP-------------SGRARELEDLQPPEALVERQGQFLGSETSPAPERGGPRD 365
+ + P S + + S +S +
Sbjct: 2588 EAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2647
Query: 366 GEPPGKMGKGYLPCGMPGSGEPEVGKRPEETTVSVQSAESSDSLSWSRLPRALAS--VGP 423
P K G LP P +R + S S SLS+S + R S P
Sbjct: 2648 SPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSP 2707
Query: 424 EEARSGAPVGGGRWQLSDRVEGGSPTLGLLGGSPSAQP 461
+ +S + G R R + SP+ +PS +P
Sbjct: 2708 RDQQSSSSERGSR--RGQRGDSRSPSHKRRRETPSPRP 2743
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 42.4 bits (98), Expect = 0.002
Identities = 53/227 (23%), Positives = 74/227 (32%), Gaps = 12/227 (5%)
Query: 23 GGGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSPEEPRSPGGWRSGRRRL 82
G P +GS P P PG G +F +S +P+ P + G
Sbjct: 2502 GSYPPAAGSSEPKAPWPKATDGDLAQEPGPGLTF----EDSGNPKSPDKAQAEQDGAEES 2557
Query: 83 NSSSGSGSGSSGSSVSSPS----WAGRLRGDRQQVVAAGTLSPPGPEEAKRKLRILQREL 138
SSS S SGSS SS SS S G GD+ GT + R
Sbjct: 2558 ESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSS 2617
Query: 139 QNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCPFRSSSQPPGRVLVQGARSE 198
+ + + + SS+ + S + S S SSS E
Sbjct: 2618 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--SSSTTDE 2675
Query: 199 ERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPL--PGRAAP 243
+ S E P + S + P+ + Q K P PG+ P
Sbjct: 2676 DSSCSSDDEAAPAPTAGPSAQAALPTKATKQAGKARPSAHSPGKKTP 2722
Score = 38.5 bits (88), Expect = 0.030
Identities = 85/460 (18%), Positives = 147/460 (31%), Gaps = 69/460 (15%)
Query: 184 SQPPGRVLVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLPGRAAP 243
++P +LV A+ R+T + T G+ GG + K GR
Sbjct: 2289 AEPSPALLVPSAKRRSRKT---------SKDTGEGKDGGTAGSEEPGAKAR----GRGRK 2335
Query: 244 TGSEAQGPSAFVRMEKG-----IPASPRCGSPTAMEIDKRGSPTPGTRSCLAPSLGLFGA 298
++A+G A +E+G +P++P P++ K+ P P + AP
Sbjct: 2336 PSAKAKGDRA-ATLEEGNPTDEVPSTPLALEPSSTPGSKKSPPEPVDKRAKAPK------ 2388
Query: 299 SLTMATEVAARVTSTGPHRPQDLALTEPSGRARELEDLQPPEALVERQGQFLGSETSPAP 358
A S P EP P L+ + + A
Sbjct: 2389 -----ARPAPPQPSPAPPAFTSCPAPEPFAELPAPATSLAPAPLITMPATRPKPKKARAA 2443
Query: 359 ERGGPRDGEPPGKMGKGYLPCGMPGSGEPEVGKRPEETTVSVQSAESSDSLSWSRLPRAL 418
E G + PG+ + + G P+ K E + E + W P++L
Sbjct: 2444 EESGAKGPRRPGEEAELLVKLDHEGVTSPKSKKAKEALLLR----EDPGAGGWQE-PKSL 2498
Query: 419 ASVGPEEARSGAPVGGGRWQLSDRVEGGSPTLGLLGGSPSAQPGTGNVEAGIPSGRMLEP 478
S+G +G+ W + T G L P PG ++G P
Sbjct: 2499 LSLGSYPPAAGSSEPKAPWPKA--------TDGDLAQEPG--PGLTFEDSGNP------- 2541
Query: 479 LPCWDAAKDLKEPQCPPGDRVGVQPGNSRVWQGTMEKAGLAWTRGTGVQSEGTWESQRQD 538
K P ++ G + S + + + + +G ++EG E +
Sbjct: 2542 ----------KSPDKAQAEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNG 2591
Query: 539 SDAL-------PSPELLPQDPDKPFLRKACSPSNIPAVIITDMGTQEDGALEETQGSPRG 591
+ P + S S+ + + + + + S
Sbjct: 2592 DGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2651
Query: 592 NLPLRKLSSSSASSTGFSSSYEDSEEDISSDPERTLDPNS 631
+ SSSS+SS+ SSS D + SSD E P +
Sbjct: 2652 SSSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTA 2691
Score = 33.5 bits (75), Expect = 0.96
Identities = 66/323 (20%), Positives = 103/323 (31%), Gaps = 56/323 (17%)
Query: 62 ESLSPEEPRSPGGWRSGRRRLNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSP 121
E+L E GGW+ + L S GS ++GSS W GD Q
Sbjct: 2479 EALLLREDPGAGGWQEPKSLL--SLGSYPPAAGSSEPKAPWPKATDGDLAQ--------E 2528
Query: 122 PGPEEAKRKLRILQRELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCPFR 181
PGP + + S P+SP +A
Sbjct: 2529 PGPG----------------------------LTFEDSG--NPKSPDKAQAEQDGAEESE 2558
Query: 182 SSSQPPGRVLVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLPGRA 241
SSS G+ S + S G ET G + G K G C + + A
Sbjct: 2559 SSSSSS-----SGSSSSSSSSSSSGS---ETEGEEEGDKNGDGGCGTGGRNCSAASSRAA 2610
Query: 242 APTGSEAQGPSAFVRMEKGIPASPRCGSPTAMEIDKRGSPTPGTRSCLAPSLGLFGASLT 301
+P S + S+ +S S ++ S + + S + S +S +
Sbjct: 2611 SPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2670
Query: 302 MATEVAARVTSTGPHRPQDLALTEPSGRARELEDLQPPEALVERQGQFLGSETSPAPERG 361
T+ + +S P A PS +A P ++ G+ S SP +
Sbjct: 2671 STTDEDSSCSSDDEAAPAPTA--GPSAQA------ALPTKATKQAGKARPSAHSPGKKTP 2722
Query: 362 GPRDGEPPGKMGKGYLPCGMPGS 384
P+ PP + + P G+
Sbjct: 2723 APQPQAPPPQPTQPLQPKAQAGA 2745
Score = 31.6 bits (70), Expect = 3.7
Identities = 27/87 (31%), Positives = 32/87 (36%)
Query: 15 NSANEMKSGGGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSPEEPRSPGG 74
+S+ S SGSET G + GR S A S + S
Sbjct: 2563 SSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSSSS 2622
Query: 75 WRSGRRRLNSSSGSGSGSSGSSVSSPS 101
S +SSS S S SS SS SS S
Sbjct: 2623 SSSSSSSSSSSSSSSSSSSSSSSSSSS 2649
>gi|148806908 fibronectin type III domain containing 1 [Homo sapiens]
Length = 1894
Score = 42.4 bits (98), Expect = 0.002
Identities = 74/296 (25%), Positives = 103/296 (34%), Gaps = 47/296 (15%)
Query: 26 PGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSPEEP--------RSPGGWR- 76
P + P PRR +PGR PP + S P RSP R
Sbjct: 982 PAARSQQHPSVPRR--------MTPGRAPQQQPPPPVATSQHHPGPQSRDAGRSPSQPRL 1033
Query: 77 ----SGRRRLNSSSGSGSGSSGSSVSSPSWA------------GRLRGDRQQVVAAGTLS 120
+GR R S S S S + SS G D +V A +
Sbjct: 1034 SLTQAGRPRPTSQGRSHSSSDPYTASSRGMLPTALQNQDEDAQGSYDDDSTEVEAQDVRA 1093
Query: 121 PPGPEEAKRKLRILQRELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCPF 180
P AK L + Q V+ G H + A R R G +S + P
Sbjct: 1094 PAHAARAKEAAASLPKH-QQVESPTGAGAGGDHRSQRGHAASPARPSRPGGPQSRARVPS 1152
Query: 181 RSS---SQPPGRVLVQGARSEERRTKSWGEQCPETSGTDSGRKGGPSLCSSQVKKGMPPL 237
R++ S+PP + + S+ +++ S + E +G G G L SS V P
Sbjct: 1153 RAAPGKSEPPSK---RPLSSKSQQSVSAEDDEEEDAGFFKG--GKEDLLSSSV----PKW 1203
Query: 238 PGRAAPTGS-EAQGPSAFVRMEKGIPASPRCGSPTAMEIDKRGSPTPGTRSCLAPS 292
P + P G +A G A E I +PR GS ++ P R+ PS
Sbjct: 1204 PSSSTPRGGKDADGSLAKEEREPAIALAPRGGSLAPVKRPLPPPPGSSPRASHVPS 1259
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 42.4 bits (98), Expect = 0.002
Identities = 90/398 (22%), Positives = 120/398 (30%), Gaps = 59/398 (14%)
Query: 21 KSGGGPGPSGSETPPPPRRAVLSPGSVFSPGRGASFLFPPAESLSPEEPRSPG------- 73
K G P P G PPP+ G PG+ PP P+ P PG
Sbjct: 46 KPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQG--PPPQGGNKPQGPPPPGKPQGPPP 103
Query: 74 -GWRSGRRRLNSSSGSGSGSSGSSVSSPSWAGRLRGDRQQVVAAGTLSPPG-PEEAKRKL 131
G +S R S G G + P G Q G P G P K +
Sbjct: 104 QGDKS--RSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQG 161
Query: 132 RILQRELQNVQVNQKVGMFEAHIQAQSSAIQAPRSPRLGRARSPSPCPFRSSSQPPGRVL 191
Q + ++ G + + Q P P G+ + P P PP
Sbjct: 162 PPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPP-GKPQGPPPQGGNKPQGPPPPGK 220
Query: 192 VQGA------RSEERRTKSWGEQCPETSGTDS--------GRKGGPSLCSSQVKKGMPPL 237
QG +S+ R+ Q P G + G+ GP +G PP
Sbjct: 221 PQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPP- 279
Query: 238 PGRAAPTGSEAQGPSAFVRMEKGIPASPRCGSPTAMEIDKRGSPTPGTRSCLAPSLGLFG 297
PG+ P G QG S R + P P+ P + P PG P G
Sbjct: 280 PGK--PQGPPPQGGSK-SRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGG--- 333
Query: 298 ASLTMATEVAARVTSTGPHRPQDLALTEPSGRARELEDLQPPEALVERQGQFLGSETSPA 357
GP P P G ++ PP G P
Sbjct: 334 ------------NKPQGPPPPGKPQGPPPQGGSKSRSARSPP-----------GKPQGPP 370
Query: 358 PERGGPRDGEPPGKMGKGYLPCGMPGSGEPEVGKRPEE 395
+ G G PP G P P +G+P+ RP +
Sbjct: 371 QQEGNNPQGPPPPAGGNPQQP-QAPPAGQPQGPPRPPQ 407
Score = 39.7 bits (91), Expect = 0.013
Identities = 73/315 (23%), Positives = 99/315 (31%), Gaps = 28/315 (8%)
Query: 206 GEQCPETSGTDSGRKGGPSLCSSQVKKGMPPLPGR----AAPTGSEAQGPSAFVRMEKGI 261
G P+ + G+ GP +G PP PG+ G++ QGP + +
Sbjct: 43 GGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP 102
Query: 262 PASPRCGSPTAMEIDKRGSPTPGTRSCLAPSLGLFGASLTMATEVAARVTSTGPHRPQDL 321
P + SP + +G P G P GP P
Sbjct: 103 PQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPP---PPGKPQGPPPQGGNKPQGPPPPGKP 159
Query: 322 ALTEPSGRARELEDLQPPEALVERQGQFLGSETSPAPERGGPRDGEPPGKMGKGYLPCGM 381
P G + PP Q P P G P+ P G G P G
Sbjct: 160 QGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG----GNKPQGP 215
Query: 382 PGSGEPEVGKRPEETTVSVQSAESSDSLSWSRLPRA-----LASVGPEEARSGAPVGGGR 436
P G+P+ G P+ S QSA S P+ P + + P GG +
Sbjct: 216 PPPGKPQ-GPPPQGDNKS-QSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK 273
Query: 437 WQLSDRVEGGSPTLGLLGGSPSAQPGTGNVEAGIPSGRMLEPLPCWDAAKDLKEPQCPPG 496
Q G P G G P Q G+ + + P G+ P P + P PPG
Sbjct: 274 PQ-------GPPPPGKPQG-PPPQGGSKSRSSRSPPGKPQGPPP--QGGNQPQGPPPPPG 323
Query: 497 DRVGVQPGNSRVWQG 511
G P QG
Sbjct: 324 KPQGPPPQGGNKPQG 338
Score = 32.3 bits (72), Expect = 2.1
Identities = 66/269 (24%), Positives = 84/269 (31%), Gaps = 44/269 (16%)
Query: 344 ERQGQFLGSETSPAPERGGPRDGEPPGKMGKGY--------------LPCGMPGSGEPEV 389
E + AP +GG + PP GK P G P P+
Sbjct: 26 EESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG 85
Query: 390 GKRPEETTVSVQSAESSDSLSWSRLPRALASVGPEEARSGAPVGGGRWQLSDRVEGGSPT 449
G +P+ + SR PR+ P G P GG ++ +G P
Sbjct: 86 GNKPQGPPPPGKPQGPPPQGDKSRSPRS-----PPGKPQGPPPQGG-----NQPQGPPPP 135
Query: 450 LGLLGGSPSAQPGTGNVEAG-IPSGRMLEPLPCWDAAKDLKEPQCPPGDRVGVQPGNSRV 508
G G P P GN G P G+ P P D + + PPG G P
Sbjct: 136 PGKPQGPP---PQGGNKPQGPPPPGKPQGPPPQGD--NKSRSSRSPPGKPQGPPPQGGNQ 190
Query: 509 WQGTMEKAGLAWTRGTGVQSEGTWESQRQDSDALPSPELLPQDPDKPFLRK---ACSPSN 565
QG G + G +G + Q P P PQ P K A SP
Sbjct: 191 PQGPPPPPG----KPQGPPPQGGNKPQG------PPPPGKPQGPPPQGDNKSQSARSPPG 240
Query: 566 IPAVIITDMGTQEDGALEETQGSPRGNLP 594
P G Q G G P+G P
Sbjct: 241 KPQGPPPQGGNQPQGP-PPPPGKPQGPPP 268
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.131 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,414,945
Number of Sequences: 37866
Number of extensions: 2856768
Number of successful extensions: 15674
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 731
Number of HSP's that attempted gapping in prelim test: 12380
Number of HSP's gapped (non-prelim): 3454
length of query: 946
length of database: 18,247,518
effective HSP length: 112
effective length of query: 834
effective length of database: 14,006,526
effective search space: 11681442684
effective search space used: 11681442684
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.