Guide to the Human Genome
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Name: LOC100287198 Sequence: fasta or formatted (528aa) NCBI GI: 239743276
Description:

PREDICTED: hypothetical protein XP_002342815

Not currently referenced in the text

Other entries for this name:
alt mRNA {528aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         60           3
 C cysteine            2.3         12           1
 D aspartate           1.3          7           1
 E glutamate           6.4         34           2
 F phenylalanine       1.7          9           1
 G glycine            11.4         60           3
 H histidine           2.1         11           1
 I isoleucine          1.9         10           1
 K lysine              1.5          8           1
 L leucine             9.1         48           2
 M methionine          0.4          2           1
 N asparagine          0.4          2           1
 P proline            11.0         58           3
 Q glutamine           4.7         25           1
 R arginine            8.1         43           4
 S serine             10.8         57           4
 T threonine           5.9         31           2
 V valine              6.8         36           2
 W tryptophan          1.5          8           1
 Y tyrosine            1.3          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342815 
LOC100291071          1.000   PREDICTED: hypothetical protein XP_002346951 
LOC100287198          1.000   PREDICTED: hypothetical protein 
MLL4                  0.028   myeloid/lymphoid or mixed-lineage leukemia 4 
SHANK1                0.026   SH3 and multiple ankyrin repeat domains 1 
LOC100133756          0.026   PREDICTED: hypothetical protein, partial 
MAP4                  0.026   microtubule-associated protein 4 isoform 5 
MAP4                  0.026   microtubule-associated protein 4 isoform 4 
MAP4                  0.026   microtubule-associated protein 4 isoform 2 
MAP4                  0.026   microtubule-associated protein 4 isoform 1 
FLJ22184              0.025   PREDICTED: hypothetical protein FLJ22184 
NACA                  0.024   nascent polypeptide-associated complex alpha subuni...
MAGEE1                0.023   melanoma antigen family E, 1 
SNX26                 0.022   sorting nexin 26 
ITPKB                 0.022   1D-myo-inositol-trisphosphate 3-kinase B 
SAMD1                 0.021   sterile alpha motif domain containing 1 
HCN4                  0.021   hyperpolarization activated cyclic nucleotide-gated p...
SF1                   0.021   splicing factor 1 isoform 3 
SF1                   0.021   splicing factor 1 isoform 2 
FLJ22184              0.020   PREDICTED: hypothetical protein FLJ22184 
LOC100127930          0.020   PREDICTED: hypothetical protein 
IRF2BP2               0.020   interferon regulatory factor 2 binding protein 2 is...
IRF2BP2               0.020   interferon regulatory factor 2 binding protein 2 is...
SF1                   0.020   splicing factor 1 isoform 1 
TAF4                  0.019   TBP-associated factor 4 
DACT3                 0.019   thymus expressed gene 3-like 
LOC729370             0.019   PREDICTED: hypothetical protein 
KDM6B                 0.019   lysine (K)-specific demethylase 6B 
SRRM1                 0.019   serine/arginine repetitive matrix 1 
WASL                  0.018   Wiskott-Aldrich syndrome gene-like protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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