Guide to the Human Genome
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Name: SPIRE1 Sequence: fasta or formatted (622aa) NCBI GI: 191250775
Description:

spire homolog 1 isoform c

Referenced in:

Cytoskeleton

Other entries for this name:
alt prot [742aa] spire homolog 1 isoform b
alt prot [756aa] spire homolog 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         30           2
 C cysteine            2.6         16           2
 D aspartate           3.7         23           2
 E glutamate          10.6         66           3
 F phenylalanine       2.9         18           2
 G glycine             2.4         15           2
 H histidine           1.8         11           2
 I isoleucine          4.7         29           3
 K lysine              8.4         52           2
 L leucine             9.2         57           2
 M methionine          2.7         17           1
 N asparagine          2.4         15           1
 P proline             7.4         46           2
 Q glutamine           3.9         24           2
 R arginine            8.2         51           2
 S serine             11.1         69           4
 T threonine           5.3         33           2
 V valine              4.7         29           1
 W tryptophan          0.6          4           1
 Y tyrosine            2.7         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   spire homolog 1 isoform c 
SPIRE1                1.000   spire homolog 1 isoform b 
SPIRE1                0.993   spire homolog 1 isoform a 
SPIRE2                0.353   spire homolog 2 
NEFH                  0.014   neurofilament, heavy polypeptide 200kDa 
SRRM2                 0.013   splicing coactivator subunit SRm300 
C14orf174             0.012   hypothetical protein LOC161394 
UTP14C                0.012   UTP14, U3 small nucleolar ribonucleoprotein, homolog...
NHSL2                 0.012   NHS-like 2 
DPCR1                 0.012   diffuse panbronchiolitis critical region 1 protein ...
FAM47C                0.012   hypothetical protein LOC442444 
LOC100294236          0.012   PREDICTED: similar to diffuse panbronchiolitis crit...
PRG4                  0.011   proteoglycan 4 isoform D 
PRG4                  0.011   proteoglycan 4 isoform C 
PRG4                  0.011   proteoglycan 4 isoform B 
PRG4                  0.011   proteoglycan 4 isoform A 
MLLT6                 0.011   myeloid/lymphoid or mixed-lineage leukemia (trithora...
TTN                   0.010   titin isoform N2-A 
MKL2                  0.010   megakaryoblastic leukemia 2 protein 
KIAA2018              0.010   hypothetical protein LOC205717 
LOC100128719          0.010   PREDICTED: hypothetical protein, partial 
LOC100128719          0.010   PREDICTED: hypothetical protein, partial 
DLGAP5                0.010   discs large homolog 7 isoform b 
DLGAP5                0.010   discs large homolog 7 isoform a 
C15orf42              0.009   leucine-rich repeat kinase 1 
SRRM1                 0.009   serine/arginine repetitive matrix 1 
RAPGEF1               0.009   guanine nucleotide-releasing factor 2 isoform b [Hom...
RAPGEF1               0.009   guanine nucleotide-releasing factor 2 isoform a [Hom...
CENPC1                0.009   centromere protein C 1 
ZNF828                0.009   zinc finger protein 828 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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