Guide to the Human Genome
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Name: C3orf34 Sequence: fasta or formatted (167aa) NCBI GI: 190885493
Description:

hypothetical protein LOC84984

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2          7           2
 C cysteine            2.4          4           1
 D aspartate           7.8         13           2
 E glutamate          10.2         17           2
 F phenylalanine       5.4          9           1
 G glycine             3.6          6           1
 H histidine           0.6          1           1
 I isoleucine          6.6         11           2
 K lysine              9.6         16           3
 L leucine             8.4         14           1
 M methionine          4.2          7           2
 N asparagine          3.6          6           2
 P proline             4.2          7           2
 Q glutamine           7.2         12           1
 R arginine            6.0         10           1
 S serine              6.6         11           1
 T threonine           3.6          6           2
 V valine              2.4          4           1
 W tryptophan          0.6          1           1
 Y tyrosine            3.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC84984 
CNTROB                0.038   centrobin, centrosomal BRCA2 interacting protein is...
CNTROB                0.038   centrobin, centrosomal BRCA2 interacting protein iso...
INCENP                0.038   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.032   inner centromere protein antigens 135/155kDa isofor...
INPP5F                0.025   inositol polyphosphate-5-phosphatase F 
POLR3GL               0.025   polymerase (RNA) III (DNA directed) polypeptide G (3...
ARHGAP10              0.016   Rho GTPase activating protein 10 
TSHZ3                 0.016   zinc finger protein 537 
SLC39A12              0.016   solute carrier family 39 (zinc transporter), member...
SLC39A12              0.016   solute carrier family 39 (zinc transporter), member...
CHORDC1               0.013   cysteine and histidine-rich domain-containing prote...
RFWD3                 0.013   ring finger and WD repeat domain 3 
CHD1                  0.013   chromodomain helicase DNA binding protein 1 
PCNT                  0.013   pericentrin 
DCUN1D3               0.013   DCN1, defective in cullin neddylation 1, domain cont...
FASTKD3               0.013   FAST kinase domains 3 
MYBPC2                0.010   myosin binding protein C, fast type 
MFAP1                 0.010   microfibrillar-associated protein 1 
EIF2S2                0.010   eukaryotic translation initiation factor 2 beta [Hom...
SPTBN5                0.010   spectrin, beta, non-erythrocytic 5 
GRIPAP1               0.010   GRIP1 associated protein 1 isoform 2 
GRIPAP1               0.010   GRIP1 associated protein 1 isoform 1 
DNAJC21               0.010   DnaJ homology subfamily A member 5 isoform 2 
CEP72                 0.010   centrosomal protein 72 kDa 
CCDC122               0.010   coiled-coil domain containing 122 
HDAC5                 0.010   histone deacetylase 5 isoform 3 
HDAC5                 0.010   histone deacetylase 5 isoform 1 
AKAP12                0.010   A kinase (PRKA) anchor protein 12 isoform 1 
POLR1B                0.010   RNA polymerase I polypeptide B isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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