Guide to the Human Genome
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Name: RFWD3 Sequence: fasta or formatted (774aa) NCBI GI: 71143112
Description:

ring finger and WD repeat domain 3

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         60           2
 C cysteine            3.1         24           2
 D aspartate           4.8         37           2
 E glutamate           5.6         43           3
 F phenylalanine       2.2         17           2
 G glycine             5.8         45           2
 H histidine           2.8         22           1
 I isoleucine          3.1         24           1
 K lysine              3.4         26           2
 L leucine            10.2         79           3
 M methionine          2.3         18           1
 N asparagine          3.5         27           1
 P proline             5.9         46           2
 Q glutamine           7.5         58           2
 R arginine            5.4         42           3
 S serine             11.0         85           4
 T threonine           5.8         45           2
 V valine              6.1         47           2
 W tryptophan          1.2          9           1
 Y tyrosine            2.6         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger and WD repeat domain 3 
RNF125                0.013   ring finger protein 125 
RNF13                 0.012   ring finger protein 13 
RNF13                 0.012   ring finger protein 13 
RNF103                0.012   ring finger protein 103 
RLIM                  0.012   ring finger protein, LIM domain interacting 
RLIM                  0.012   ring finger protein, LIM domain interacting 
RNF167                0.012   ring finger protein 167 
FSCB                  0.012   fibrous sheath CABYR binding protein 
RNF122                0.012   ring finger protein 122 
TRAIP                 0.011   TRAF interacting protein 
PEX10                 0.010   peroxisome biogenesis factor 10 isoform 1 
PEX10                 0.010   peroxisome biogenesis factor 10 isoform 2 
DZIP3                 0.010   DAZ interacting protein 3, zinc finger 
RNF165                0.010   ring finger protein 165 
LOC100128084          0.010   PREDICTED: hypothetical protein 
RNF185                0.010   ring finger protein 185 isoform 1 
RNF185                0.010   ring finger protein 185 isoform 1 
TRIM35                0.009   tripartite motif-containing 35 isoform 2 
RNF6                  0.009   ring finger protein 6 
RNF6                  0.009   ring finger protein 6 
RNF6                  0.009   ring finger protein 6 
RNF126                0.009   ring finger protein 126 
ATG16L2               0.009   ATG16 autophagy related 16-like 2 
LOC644006             0.008   PREDICTED: hypothetical LOC644006 
LOC100290804          0.008   PREDICTED: hypothetical protein XP_002347917 
LOC644006             0.008   PREDICTED: hypothetical protein LOC644006 
RNF128                0.008   ring finger protein 128 isoform 1 
RNF128                0.008   ring finger protein 128 isoform 2 
RNF115                0.008   Rabring 7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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