Guide to the Human Genome
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Name: SLC39A12 Sequence: fasta or formatted (691aa) NCBI GI: 223633939
Description:

solute carrier family 39 (zinc transporter), member 12 isoform 1

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [654aa] solute carrier family 39 (zinc transporter), member 12 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         35           2
 C cysteine            2.3         16           1
 D aspartate           4.1         28           1
 E glutamate           5.6         39           2
 F phenylalanine       4.6         32           2
 G glycine             6.7         46           2
 H histidine           3.3         23           2
 I isoleucine          6.1         42           2
 K lysine              4.5         31           2
 L leucine            14.9        103           4
 M methionine          3.0         21           2
 N asparagine          3.6         25           2
 P proline             3.5         24           2
 Q glutamine           5.9         41           2
 R arginine            3.0         21           3
 S serine             11.1         77           4
 T threonine           5.5         38           3
 V valine              4.1         28           2
 W tryptophan          1.0          7           1
 Y tyrosine            2.0         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 39 (zinc transporter), member... 
SLC39A12              0.933   solute carrier family 39 (zinc transporter), member...
SLC39A4               0.197   solute carrier family 39 (zinc transporter), member...
SLC39A4               0.194   solute carrier family 39 (zinc transporter), member...
SLC39A14              0.130   solute carrier family 39 (zinc transporter), member...
SLC39A14              0.130   solute carrier family 39 (zinc transporter), member...
SLC39A14              0.126   solute carrier family 39 (zinc transporter), member...
SLC39A8               0.116   solute carrier family 39 (zinc transporter), member ...
SLC39A8               0.116   solute carrier family 39 (zinc transporter), member...
SLC39A14              0.116   solute carrier family 39 (zinc transporter), member...
SLC39A8               0.115   solute carrier family 39 (zinc transporter), member...
SLC39A5               0.106   solute carrier family 39 (metal ion transporter), m...
SLC39A5               0.106   solute carrier family 39 (metal ion transporter), m...
SLC39A8               0.104   solute carrier family 39 (zinc transporter), member...
SLC39A10              0.101   solute carrier family 39 (zinc transporter), member...
SLC39A10              0.101   solute carrier family 39 (zinc transporter), member ...
SLC39A6               0.097   solute carrier family 39 (zinc transporter), member...
SLC39A7               0.085   solute carrier family 39, member 7 
SLC39A7               0.085   solute carrier family 39, member 7 
SLC39A6               0.076   solute carrier family 39 (zinc transporter), member...
SLC39A13              0.056   solute carrier family 39 (zinc transporter), member ...
SLC39A13              0.053   solute carrier family 39 (zinc transporter), member...
SLC39A9               0.025   solute carrier family 39 (zinc transporter), member ...
SLC39A2               0.016   solute carrier family 39 (zinc transporter), member...
SLC39A1               0.013   solute carrier family 39 (zinc transporter), member ...
SLC39A11              0.009   solute carrier family 39, member 11 isoform 1 [Homo...
SLC39A11              0.007   solute carrier family 39, member 11 isoform 2 [Homo...
TAF1B                 0.005   TBP-associated factor 1B 
BCL2A1                0.005   BCL2-related protein A1 isoform 2 
BCL2A1                0.005   BCL2-related protein A1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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