Guide to the Human Genome
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Name: EIF2S2 Sequence: fasta or formatted (333aa) NCBI GI: 29826335
Description:

eukaryotic translation initiation factor 2 beta

Referenced in:

Translation Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         14           1
 C cysteine            1.8          6           1
 D aspartate           9.9         33           2
 E glutamate          10.5         35           2
 F phenylalanine       4.5         15           2
 G glycine             4.5         15           1
 H histidine           1.2          4           1
 I isoleucine          4.5         15           1
 K lysine             14.1         47           8
 L leucine             7.2         24           2
 M methionine          2.4          8           1
 N asparagine          4.2         14           2
 P proline             4.2         14           2
 Q glutamine           4.5         15           2
 R arginine            4.5         15           2
 S serine              4.5         15           1
 T threonine           6.6         22           1
 V valine              4.8         16           2
 W tryptophan          0.3          1           1
 Y tyrosine            1.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   eukaryotic translation initiation factor 2 beta [Hom... 
LOC100294088          0.051   PREDICTED: hypothetical protein, partial 
CYLC1                 0.049   cylicin, basic protein of sperm head cytoskeleton 1...
EIF5                  0.043   eukaryotic translation initiation factor 5 
EIF5                  0.043   eukaryotic translation initiation factor 5 
EIF5B                 0.035   eukaryotic translation initiation factor 5B 
CCAR1                 0.034   cell-cycle and apoptosis regulatory protein 1 
MYST3                 0.032   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.032   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.032   MYST histone acetyltransferase (monocytic leukemia)...
PCLO                  0.032   piccolo isoform 2 
PCLO                  0.032   piccolo isoform 1 
LOC100133698          0.031   PREDICTED: hypothetical protein 
WDR87                 0.031   NYD-SP11 protein 
MDN1                  0.029   MDN1, midasin homolog 
HTATSF1               0.029   HIV-1 Tat specific factor 1 
HTATSF1               0.029   HIV-1 Tat specific factor 1 
NCL                   0.029   nucleolin 
KTN1                  0.029   kinectin 1 isoform b 
KTN1                  0.029   kinectin 1 isoform a 
KTN1                  0.029   kinectin 1 isoform c 
KTN1                  0.029   kinectin 1 isoform a 
TOP1                  0.029   DNA topoisomerase I 
ATRX                  0.029   transcriptional regulator ATRX isoform 2 
ATRX                  0.029   transcriptional regulator ATRX isoform 1 
C14orf174             0.029   hypothetical protein LOC161394 
AP3B2                 0.028   adaptor-related protein complex 3, beta 2 subunit [H...
CHD7                  0.028   chromodomain helicase DNA binding protein 7 
CYLC2                 0.026   cylicin 2 
CALD1                 0.026   caldesmon 1 isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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