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Search of human proteins with 190341082
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|190341082 HECT domain containing 2 isoform b [Homo sapiens]
(207 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|190341082 HECT domain containing 2 isoform b [Homo sapiens] 409 e-115
gi|190341084 HECT domain containing 2 isoform a [Homo sapiens] 395 e-110
gi|134948605 ankyrin repeat domain 12 isoform 2 [Homo sapiens] 33 0.13
gi|223555989 hypothetical protein LOC51101 [Homo sapiens] 32 0.29
gi|134948558 ankyrin repeat domain 12 isoform 1 [Homo sapiens] 32 0.29
gi|148762940 DVL-binding protein DAPLE [Homo sapiens] 32 0.38
gi|7662162 ALEX2 protein [Homo sapiens] 32 0.50
gi|29540562 ALEX2 protein [Homo sapiens] 32 0.50
gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens] 30 1.1
gi|38683851 round spermatid basic protein 1 [Homo sapiens] 30 1.1
gi|110431348 deleted in colorectal carcinoma [Homo sapiens] 30 1.4
gi|239754787 PREDICTED: hypothetical protein [Homo sapiens] 30 1.4
gi|239749297 PREDICTED: hypothetical protein XP_002346987 [Homo ... 30 1.4
gi|239743391 PREDICTED: hypothetical protein XP_002342836 [Homo ... 30 1.4
gi|239509088 PREDICTED: hypothetical protein [Homo sapiens] 30 1.4
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 30 1.4
gi|27735067 hypothetical protein LOC126353 [Homo sapiens] 30 1.4
gi|87578396 microtubule-associated protein 2 isoform 1 [Homo sap... 30 1.9
gi|239756768 PREDICTED: similar to hCG1774990 [Homo sapiens] 30 1.9
gi|239751271 PREDICTED: similar to hCG1774990 [Homo sapiens] 30 1.9
gi|239745760 PREDICTED: similar to hCG1774990 [Homo sapiens] 30 1.9
gi|22538470 eomesodermin [Homo sapiens] 29 2.5
gi|119943102 CREB binding protein isoform b [Homo sapiens] 29 2.5
gi|119943104 CREB binding protein isoform a [Homo sapiens] 29 2.5
gi|6912246 CD3E antigen, epsilon polypeptide associated protein ... 29 2.5
gi|183396787 BCL-6 interacting corepressor isoform c [Homo sapiens] 29 2.5
gi|40556370 PHD finger protein 15 [Homo sapiens] 29 2.5
gi|46195719 olfactomedin-like 2B [Homo sapiens] 29 3.2
gi|31377639 sialic acid binding Ig-like lectin 10 [Homo sapiens] 29 3.2
gi|153791492 eukaryotic translation initiation factor 3, subunit... 28 4.2
>gi|190341082 HECT domain containing 2 isoform b [Homo sapiens]
Length = 207
Score = 409 bits (1052), Expect = e-115
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MSEAVRVPSPATPLVVAAPAPEERKGKESEREKLPPIVSAGAGATAGLDRGAKGQISTFS 60
MSEAVRVPSPATPLVVAAPAPEERKGKESEREKLPPIVSAGAGATAGLDRGAKGQISTFS
Sbjct: 1 MSEAVRVPSPATPLVVAAPAPEERKGKESEREKLPPIVSAGAGATAGLDRGAKGQISTFS 60
Query: 61 SFISAVSPKKEAAENRSSPAHLVFPNIKNVREPPPICLDVRQKQRTSMDASSSEMKAPVL 120
SFISAVSPKKEAAENRSSPAHLVFPNIKNVREPPPICLDVRQKQRTSMDASSSEMKAPVL
Sbjct: 61 SFISAVSPKKEAAENRSSPAHLVFPNIKNVREPPPICLDVRQKQRTSMDASSSEMKAPVL 120
Query: 121 PEPILPIQPKTVKDFQEDVEKVKSSGDWKAVHDFYLTTFDSFPELNAAFKKDATASFNTI 180
PEPILPIQPKTVKDFQEDVEKVKSSGDWKAVHDFYLTTFDSFPELNAAFKKDATASFNTI
Sbjct: 121 PEPILPIQPKTVKDFQEDVEKVKSSGDWKAVHDFYLTTFDSFPELNAAFKKDATASFNTI 180
Query: 181 EDSGINAKFVNAVYDTLLNTVSIMTCK 207
EDSGINAKFVNAVYDTLLNTVSIMTCK
Sbjct: 181 EDSGINAKFVNAVYDTLLNTVSIMTCK 207
>gi|190341084 HECT domain containing 2 isoform a [Homo sapiens]
Length = 776
Score = 395 bits (1016), Expect = e-110
Identities = 200/200 (100%), Positives = 200/200 (100%)
Query: 1 MSEAVRVPSPATPLVVAAPAPEERKGKESEREKLPPIVSAGAGATAGLDRGAKGQISTFS 60
MSEAVRVPSPATPLVVAAPAPEERKGKESEREKLPPIVSAGAGATAGLDRGAKGQISTFS
Sbjct: 1 MSEAVRVPSPATPLVVAAPAPEERKGKESEREKLPPIVSAGAGATAGLDRGAKGQISTFS 60
Query: 61 SFISAVSPKKEAAENRSSPAHLVFPNIKNVREPPPICLDVRQKQRTSMDASSSEMKAPVL 120
SFISAVSPKKEAAENRSSPAHLVFPNIKNVREPPPICLDVRQKQRTSMDASSSEMKAPVL
Sbjct: 61 SFISAVSPKKEAAENRSSPAHLVFPNIKNVREPPPICLDVRQKQRTSMDASSSEMKAPVL 120
Query: 121 PEPILPIQPKTVKDFQEDVEKVKSSGDWKAVHDFYLTTFDSFPELNAAFKKDATASFNTI 180
PEPILPIQPKTVKDFQEDVEKVKSSGDWKAVHDFYLTTFDSFPELNAAFKKDATASFNTI
Sbjct: 121 PEPILPIQPKTVKDFQEDVEKVKSSGDWKAVHDFYLTTFDSFPELNAAFKKDATASFNTI 180
Query: 181 EDSGINAKFVNAVYDTLLNT 200
EDSGINAKFVNAVYDTLLNT
Sbjct: 181 EDSGINAKFVNAVYDTLLNT 200
>gi|134948605 ankyrin repeat domain 12 isoform 2 [Homo sapiens]
Length = 2039
Score = 33.5 bits (75), Expect = 0.13
Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 15/136 (11%)
Query: 12 TPLVVAAPAPEERKGKESEREKLPPIVSAGAGATAGLDRGAKGQISTFSSFISAVSPKKE 71
TP + + +E K K S + KLP +S D +G KKE
Sbjct: 40 TPKIERSDVSKEMKEKSSMKRKLPFTISPSRNEERDSDTEKEGP--------EKKKTKKE 91
Query: 72 AAENRSSPAHLVFPNIKNVREPPPICLDVRQKQRTSMDASSSEMKAPVLPEPILPIQPKT 131
A +S+P ++F + R+ + + Q T+ D +S P P P Q KT
Sbjct: 92 AGNKKSTPVSILFGYPLSERKQMALLM-----QMTARD--NSPDSTPNHPSQTTPAQKKT 144
Query: 132 VKDFQEDVEKVKSSGD 147
+KV +
Sbjct: 145 PSSSSRQKDKVNKRNE 160
>gi|223555989 hypothetical protein LOC51101 [Homo sapiens]
Length = 325
Score = 32.3 bits (72), Expect = 0.29
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 95 PICLDVRQKQRTSMDASSSEMKAPVLPEPILPIQPKTVKDFQEDVEKVKSSGDWKAVHDF 154
PIC K+R + D+S + +P TVK + E K +W+ H+
Sbjct: 36 PICQKTATKKRKTFDSSRQRAEGTDIP---------TVKPLKPRPEPPKKPSNWRRKHEE 86
Query: 155 YLTTFDSFPELNAAFKK 171
++ T + L+ A K+
Sbjct: 87 FIATIRAAKGLDQALKE 103
>gi|134948558 ankyrin repeat domain 12 isoform 1 [Homo sapiens]
Length = 2062
Score = 32.3 bits (72), Expect = 0.29
Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 22/151 (14%)
Query: 12 TPLVVAAPAPEERKGKESEREKLPPIVSAGAGATAGLDRGA----------KGQISTFSS 61
TP + + +E K K S + KLP +S D + + IS++ +
Sbjct: 40 TPKIERSDVSKEMKEKSSMKRKLPFTISPSRNEERDSDTDSDPGHTSENWGERLISSYRT 99
Query: 62 FISAVSP-----KKEAAENRSSPAHLVFPNIKNVREPPPICLDVRQKQRTSMDASSSEMK 116
+ P KKEA +S+P ++F + R+ + + Q T+ D +S
Sbjct: 100 YSEKEGPEKKKTKKEAGNKKSTPVSILFGYPLSERKQMALLM-----QMTARD--NSPDS 152
Query: 117 APVLPEPILPIQPKTVKDFQEDVEKVKSSGD 147
P P P Q KT +KV +
Sbjct: 153 TPNHPSQTTPAQKKTPSSSSRQKDKVNKRNE 183
>gi|148762940 DVL-binding protein DAPLE [Homo sapiens]
Length = 2028
Score = 32.0 bits (71), Expect = 0.38
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 18 APAPEERKGKESEREKLPPIVSAGAGATAGLDRGAKGQISTFSSFISAVSPKKEAAENRS 77
AP EER + P I +AGAGA A G+ Q+ FS + + K A RS
Sbjct: 1889 APPKEERLAPLHQSATAPAIATAGAGAAAA-GSGSNSQLLHFSPAAAPAARTKPKAPPRS 1947
Query: 78 SPAHLVFP 85
+ P
Sbjct: 1948 GEVATITP 1955
>gi|7662162 ALEX2 protein [Homo sapiens]
Length = 632
Score = 31.6 bits (70), Expect = 0.50
Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 2 SEAVRVPSPATPLVVAAP--APEERKGKESEREKLPPIVSAGAGATAGLDRGA 52
+EA P PATP AAP A E S R + P SA AT G GA
Sbjct: 215 TEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPGTSAAKKATPGAHTGA 267
>gi|29540562 ALEX2 protein [Homo sapiens]
Length = 632
Score = 31.6 bits (70), Expect = 0.50
Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 2 SEAVRVPSPATPLVVAAP--APEERKGKESEREKLPPIVSAGAGATAGLDRGA 52
+EA P PATP AAP A E S R + P SA AT G GA
Sbjct: 215 TEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPGTSAAKKATPGAHTGA 267
>gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens]
Length = 547
Score = 30.4 bits (67), Expect = 1.1
Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 16/148 (10%)
Query: 4 AVRVPSPATPLVVAAPAPEE---------RKGKESEREKLPPIVSAGAGATAGLDRGAKG 54
A R PSP++P AA AP E R+ ES R P + D+
Sbjct: 100 AARGPSPSSPTPPAAAAPAEQAPRAKGRPRRSPESHRRSSSPERRSPGSPVCRADKAKSQ 159
Query: 55 QISTFS-----SFISAVSPKKEAAENRSSPAHLVFPN-IKNVREPPPICLDVRQKQRTSM 108
Q+ T S S + ++ + P H+ +P+ +K+ P C ++ S
Sbjct: 160 QVRTSSTIRRTSSLDTITGPYLTGQWPRDP-HVHYPSCMKDKATQTPSCWAEEGAEKRSH 218
Query: 109 DASSSEMKAPVLPEPILPIQPKTVKDFQ 136
S+S A L E I ++ + + Q
Sbjct: 219 QRSASWGSADQLKEQIAKLRQQLQRSKQ 246
>gi|38683851 round spermatid basic protein 1 [Homo sapiens]
Length = 802
Score = 30.4 bits (67), Expect = 1.1
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 14/79 (17%)
Query: 4 AVRVPSPATPLVVAAPAPEERKGKESEREKLPPIVSAGAGATAGLDRGAKGQISTFSSF- 62
A VP P PL++ P P P + AG A L + + TFS
Sbjct: 131 APTVPGPVEPLLLPPPPP-------------PSLAPAGPAVAAPLPAPSTSALFTFSPLT 177
Query: 63 ISAVSPKKEAAENRSSPAH 81
+SA PK + + R H
Sbjct: 178 VSAAGPKHKGHKERHKHHH 196
>gi|110431348 deleted in colorectal carcinoma [Homo sapiens]
Length = 1447
Score = 30.0 bits (66), Expect = 1.4
Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 10/121 (8%)
Query: 7 VPSPATPLVVAAPAPEERKGKESEREKLPPIVSAGAGATAGLDRG-AKGQISTFSSFISA 65
VP PA P P+ + R+ +P +VS+ + AKG I TF+ F S
Sbjct: 417 VPKPAIPSSSVLPS--------APRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSR 468
Query: 66 VSPKKEAAENRSSPAHLVFPNIKNVREPPPICLDVRQKQRTSMDASSSEMKAPVLPEPIL 125
+E A N + P L + N++ V SS +K PE +
Sbjct: 469 EGDNRERALNTTQPGSLQL-TVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQPELQV 527
Query: 126 P 126
P
Sbjct: 528 P 528
>gi|239754787 PREDICTED: hypothetical protein [Homo sapiens]
Length = 179
Score = 30.0 bits (66), Expect = 1.4
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 4 AVRVPSPATPLVVAAPAPEERKGKESEREKLPPIVSAGAGATAGLDRGAKGQ 55
A R P+P+ AAP P G ERE P +S G G T G + Q
Sbjct: 127 AWRRPTPSRAQASAAPLP----GSHLERELRPRAISRGRGRTCGAGSSRRQQ 174
>gi|239749297 PREDICTED: hypothetical protein XP_002346987 [Homo
sapiens]
Length = 179
Score = 30.0 bits (66), Expect = 1.4
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 4 AVRVPSPATPLVVAAPAPEERKGKESEREKLPPIVSAGAGATAGLDRGAKGQ 55
A R P+P+ AAP P G ERE P +S G G T G + Q
Sbjct: 127 AWRRPTPSRAQASAAPLP----GSHLERELRPRAISRGRGRTCGAGSSRRQQ 174
>gi|239743391 PREDICTED: hypothetical protein XP_002342836 [Homo
sapiens]
Length = 179
Score = 30.0 bits (66), Expect = 1.4
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 4 AVRVPSPATPLVVAAPAPEERKGKESEREKLPPIVSAGAGATAGLDRGAKGQ 55
A R P+P+ AAP P G ERE P +S G G T G + Q
Sbjct: 127 AWRRPTPSRAQASAAPLP----GSHLERELRPRAISRGRGRTCGAGSSRRQQ 174
>gi|239509088 PREDICTED: hypothetical protein [Homo sapiens]
Length = 179
Score = 30.0 bits (66), Expect = 1.4
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 4 AVRVPSPATPLVVAAPAPEERKGKESEREKLPPIVSAGAGATAGLDRGAKGQ 55
A R P+P+ AAP P G ERE P +S G G T G + Q
Sbjct: 127 AWRRPTPSRAQASAAPLP----GSHLERELRPRAISRGRGRTCGAGSSRRQQ 174
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 30.0 bits (66), Expect = 1.4
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 13/121 (10%)
Query: 2 SEAVRVPSPATPLVVAAPAPEERKGKESEREKLPP-------IVSAGAGATAGLDRGAKG 54
S+ ++VP P P+PE+ KE E+EK P S + R +
Sbjct: 242 SDILKVPKPEPIPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRR 301
Query: 55 QISTFSSFI--SAVSPKKEAAENRSSPAHLVFPNIKNVREPPPICLDVRQKQRTSMDASS 112
S S+ SP++ + R +P + P ++ R P VR+++R+S S
Sbjct: 302 HRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSP----VRRRRRSSASLSG 357
Query: 113 S 113
S
Sbjct: 358 S 358
>gi|27735067 hypothetical protein LOC126353 [Homo sapiens]
Length = 679
Score = 30.0 bits (66), Expect = 1.4
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 9 SPATPLVVAAPAPEERKGKESEREKLPPIVSAGAGATAGLDRGAKGQISTFSSFISAVSP 68
SPA A PAPE RK + P +S G T L+ A G SS +A +
Sbjct: 400 SPAPDARAADPAPEVRKVNRIPPDAYQPYLSPG---TPQLEFSAFGAFGKPSSLSTAEAK 456
Query: 69 KKEAAENRSSPAHL 82
+ + SP HL
Sbjct: 457 AATSPKATMSPRHL 470
>gi|87578396 microtubule-associated protein 2 isoform 1 [Homo
sapiens]
Length = 1827
Score = 29.6 bits (65), Expect = 1.9
Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 14/134 (10%)
Query: 14 LVVAAPAPEERKGKESEREKLP-------PIVSAGAGATAGLDR----GAKGQISTFSSF 62
L + P ++K KESE++ P +VS D+ G + + + + F
Sbjct: 167 LTPSTAEPSDQKEKESEKQSKPGEDLKHAALVSQPETTKTYPDKKDMQGTEEEKAPLALF 226
Query: 63 ISAVSPKKEAAENRSSPAHLVFPNIKNVREPPPICLDVRQKQRTSMDASSSE--MKAPVL 120
+ E + ++ P+ LV P I +EPP +A E + AP+
Sbjct: 227 GHTLVASLEDMKQKTEPS-LVVPGIDLPKEPPTPKEQKDWFIEMPTEAKKDEWGLVAPIS 285
Query: 121 PEPILPIQPKTVKD 134
P P+ P++ K V D
Sbjct: 286 PGPLTPMREKDVFD 299
>gi|239756768 PREDICTED: similar to hCG1774990 [Homo sapiens]
Length = 280
Score = 29.6 bits (65), Expect = 1.9
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 68 PKKEAAENRSS--PAHLVFPN--IKNVREPPPICLDVRQKQRTSMDASSSEMKAPVLPEP 123
P+KE E R + PA + ++VR+PP + + + + ++ DA + + V P P
Sbjct: 149 PRKEKWEERGARRPASSAAQDDYARHVRDPPAVAVAAPKARASAPDAVVTPPRLAVAPVP 208
Query: 124 ILP 126
+LP
Sbjct: 209 VLP 211
>gi|239751271 PREDICTED: similar to hCG1774990 [Homo sapiens]
Length = 246
Score = 29.6 bits (65), Expect = 1.9
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 68 PKKEAAENRSS--PAHLVFPN--IKNVREPPPICLDVRQKQRTSMDASSSEMKAPVLPEP 123
P+KE E R + PA + ++VR+PP + + + + ++ DA + + V P P
Sbjct: 115 PRKEKWEERGARRPASSAAQDDYARHVRDPPAVAVAAPKARASAPDAVVTPPRLAVAPVP 174
Query: 124 ILP 126
+LP
Sbjct: 175 VLP 177
>gi|239745760 PREDICTED: similar to hCG1774990 [Homo sapiens]
Length = 280
Score = 29.6 bits (65), Expect = 1.9
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 68 PKKEAAENRSS--PAHLVFPN--IKNVREPPPICLDVRQKQRTSMDASSSEMKAPVLPEP 123
P+KE E R + PA + ++VR+PP + + + + ++ DA + + V P P
Sbjct: 149 PRKEKWEERGARRPASSAAQDDYARHVRDPPAVAVAAPKARASAPDAVVTPPRLAVAPVP 208
Query: 124 ILP 126
+LP
Sbjct: 209 VLP 211
>gi|22538470 eomesodermin [Homo sapiens]
Length = 686
Score = 29.3 bits (64), Expect = 2.5
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 11 ATPLVVAAPAPEE-RKGKESEREKLPPIVSAGAGATAGLDRGAKGQISTFSS 61
A+ VA P P + RKG E+LP +A A A A A+ + + SS
Sbjct: 90 ASAAAVAKPGPPDGRKGSPCGEEELPSAAAAAAAAAAAAAATARYSMDSLSS 141
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 29.3 bits (64), Expect = 2.5
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 6/117 (5%)
Query: 17 AAPAPEERKGKESEREKLPPIVSAGAGATAGLDRGAKGQISTFSSFISAVSPKKEAAENR 76
A P P G ++ + PP+ + T A G S + ++P + AA +
Sbjct: 790 ALPNPLNMLGPQASQLPCPPVTQSPLHPTPPPASTAAGMPSLQHTTPPGMTPPQPAAPTQ 849
Query: 77 SSPAHLVFPNIKNVREPPPICLDVRQKQRT-SMDASSSEMKAPVLPEPILPIQPKTV 132
S P + + P P V +T S + +A V P+P P+QP +V
Sbjct: 850 PST-----PVSSSGQTPTPTPGSVPSATQTQSTPTVQAAAQAQVTPQPQTPVQPPSV 901
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 29.3 bits (64), Expect = 2.5
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 6/117 (5%)
Query: 17 AAPAPEERKGKESEREKLPPIVSAGAGATAGLDRGAKGQISTFSSFISAVSPKKEAAENR 76
A P P G ++ + PP+ + T A G S + ++P + AA +
Sbjct: 828 ALPNPLNMLGPQASQLPCPPVTQSPLHPTPPPASTAAGMPSLQHTTPPGMTPPQPAAPTQ 887
Query: 77 SSPAHLVFPNIKNVREPPPICLDVRQKQRT-SMDASSSEMKAPVLPEPILPIQPKTV 132
S P + + P P V +T S + +A V P+P P+QP +V
Sbjct: 888 PST-----PVSSSGQTPTPTPGSVPSATQTQSTPTVQAAAQAQVTPQPQTPVQPPSV 939
>gi|6912246 CD3E antigen, epsilon polypeptide associated protein
[Homo sapiens]
Length = 510
Score = 29.3 bits (64), Expect = 2.5
Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 22/149 (14%)
Query: 13 PLVVAAPAPEERKGKESERE----------------KLPPIVSAGAGATAGLDRGAKGQI 56
PL A P P +K K+ + + ++ P+ S G GAK Q
Sbjct: 317 PLEEAIPLPPTKKRKKEKGQMAMMEPGTEAMEPVEPEMKPLESPGGTMAPQQPEGAKPQA 376
Query: 57 STFSSFISAVSPKKEAAENRSSPAHLVFPNIKNVREPPPICLDVRQKQRTSMDASSSEMK 116
+ +PKK+ + + A V P + V P L+ + ++ + +
Sbjct: 377 QA-----ALAAPKKKTKKEKQQDA-TVEPETEVVGPELPDDLEPQAAPTSTKKKKKKKER 430
Query: 117 APVLPEPILPIQPKTVKDFQEDVEKVKSS 145
+ EPI P++P+ + Q + S
Sbjct: 431 GHTVTEPIQPLEPELPGEGQPEARATPGS 459
>gi|183396787 BCL-6 interacting corepressor isoform c [Homo sapiens]
Length = 1755
Score = 29.3 bits (64), Expect = 2.5
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 71 EAAENRSSPAHLVFPNIKNVREPPPI----------CLDVRQKQRTSMDASSSEMKAPVL 120
EA E++ P F + V EPP L V +K++ S D+S +E A +
Sbjct: 1093 EAPEDKDLPVEKYFVERQPVSEPPADQVASDMPHSPTLRVDRKRKVSGDSSHTETTAEEV 1152
Query: 121 PE-PILPIQPKTV-KDFQEDVEKVKSSGD 147
PE P+L + + V KD + E SS +
Sbjct: 1153 PEDPLLKAKRRRVSKDDWPEREMTNSSSN 1181
>gi|40556370 PHD finger protein 15 [Homo sapiens]
Length = 790
Score = 29.3 bits (64), Expect = 2.5
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 14/125 (11%)
Query: 6 RVPSPATPLVVAAPAPEERKGKESEREKLPPIVSAGAGATAGLDRGAKGQISTFSSFISA 65
R+P+ P P P++ G + +K P G AG +G +G +
Sbjct: 599 RLPAKKKP---PPPPPQDGPGSRTTPDKAP---KKTWGQDAGSGKGGQGPPTR------- 645
Query: 66 VSPKKEAAENRSSPAHLVFPNIKNVREPPPICLDVRQKQRTSMDASSSEMKAPVL-PEPI 124
P++ ++ SSPA P + PPP+ + + + S ++ P P+P+
Sbjct: 646 KPPRRTSSHLPSSPAAGDCPILATPESPPPLAPETPDEAASVAADSDVQVPGPAASPKPL 705
Query: 125 LPIQP 129
++P
Sbjct: 706 GRLRP 710
>gi|46195719 olfactomedin-like 2B [Homo sapiens]
Length = 750
Score = 28.9 bits (63), Expect = 3.2
Identities = 13/58 (22%), Positives = 31/58 (53%)
Query: 120 LPEPILPIQPKTVKDFQEDVEKVKSSGDWKAVHDFYLTTFDSFPELNAAFKKDATASF 177
L E + K + +ED+E++++ + + + DS P++ +A ++DA A++
Sbjct: 180 LEEEVSKNLTKENEQIKEDMEEIRTEMNKRGKENCSENILDSMPDIRSALQRDAAAAY 237
>gi|31377639 sialic acid binding Ig-like lectin 10 [Homo sapiens]
Length = 697
Score = 28.9 bits (63), Expect = 3.2
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 9 SPATPLVVAAPAPEERKGKESEREKLPPIVSAGAGATAGLDRGAKGQISTFSSFISAVSP 68
SP TPL AP+PE +K ++ + + LP + A + ++ ++ + V P
Sbjct: 619 SPRTPLPPGAPSPESKKNQKKQYQ-LPSFPEPKSSTQAPESQESQEELHYATLNFPGVRP 677
Query: 69 KKEAAENRSSPA 80
+ EA + + A
Sbjct: 678 RPEARMPKGTQA 689
>gi|153791492 eukaryotic translation initiation factor 3, subunit
C-like [Homo sapiens]
Length = 914
Score = 28.5 bits (62), Expect = 4.2
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 129 PKTVKDFQEDVEKVKSSGDWKAVHDFYLT------TFDSFPELNAAFKKDATASFNTIED 182
P+++++ K GDWK H F + +D FPE + K T I++
Sbjct: 731 PESMREHVVAASKAMKMGDWKTCHSFIINEKMNGKVWDLFPEAD----KVRTMLVRKIQE 786
Query: 183 SGINAKF--VNAVYDTL-LNTVSIM 204
+ ++VYD++ + T+S M
Sbjct: 787 ESLRTYLFTYSSVYDSISMETLSDM 811
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.127 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,267,412
Number of Sequences: 37866
Number of extensions: 403959
Number of successful extensions: 1536
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 1502
Number of HSP's gapped (non-prelim): 99
length of query: 207
length of database: 18,247,518
effective HSP length: 98
effective length of query: 109
effective length of database: 14,536,650
effective search space: 1584494850
effective search space used: 1584494850
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.