Guide to the Human Genome
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Name: LOC100289813 Sequence: fasta or formatted (179aa) NCBI GI: 239749297
Description:

PREDICTED: hypothetical protein XP_002346987

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         20           2
 C cysteine            5.6         10           1
 D aspartate           1.1          2           1
 E glutamate           6.1         11           2
 F phenylalanine       1.1          2           1
 G glycine             8.4         15           1
 H histidine           2.8          5           1
 I isoleucine          1.1          2           1
 K lysine              1.1          2           1
 L leucine             7.8         14           2
 M methionine          1.7          3           1
 N asparagine          1.7          3           1
 P proline            10.1         18           1
 Q glutamine           4.5          8           2
 R arginine           13.4         24           2
 S serine             12.8         23           2
 T threonine           4.5          8           1
 V valine              3.4          6           1
 W tryptophan          1.1          2           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346987 
LOC100292930          1.000   PREDICTED: hypothetical protein 
LOC100287094          1.000   PREDICTED: hypothetical protein XP_002342836 
LOC100287094          1.000   PREDICTED: hypothetical protein 
C1orf229              0.034   hypothetical protein LOC388759 
FLJ31945              0.032   PREDICTED: hypothetical protein 
FLJ31945              0.032   PREDICTED: hypothetical protein 
FLJ31945              0.026   PREDICTED: hypothetical protein 
LOC100292568          0.026   PREDICTED: hypothetical protein 
LOC100291146          0.026   PREDICTED: hypothetical protein XP_002346600 
LOC100289534          0.026   PREDICTED: hypothetical protein XP_002342442 
ESYT2                 0.023   family with sequence similarity 62 (C2 domain contai...
IRX4                  0.020   iroquois homeobox 4 
C11orf80              0.020   hypothetical protein LOC79703 
C10orf95              0.020   hypothetical protein LOC79946 
LOC348751             0.020   PREDICTED: hypothetical protein 
LOC348751             0.020   PREDICTED: hypothetical protein isoform 4 
LOC348751             0.020   PREDICTED: hypothetical protein isoform 2 
LOC100292262          0.017   PREDICTED: hypothetical protein 
LOC100292035          0.017   PREDICTED: hypothetical protein XP_002345623 
LOC100287141          0.017   PREDICTED: hypothetical protein XP_002343631 
SRRM2                 0.017   splicing coactivator subunit SRm300 
LOC100292287          0.014   PREDICTED: hypothetical protein 
LOC100289576          0.014   PREDICTED: hypothetical protein 
LOC100289576          0.014   PREDICTED: hypothetical protein XP_002343622 
LOC100288243          0.014   PREDICTED: hypothetical protein 
LOC100288243          0.014   PREDICTED: hypothetical protein XP_002342233 
HECTD2                0.014   HECT domain containing 2 isoform b 
HECTD2                0.014   HECT domain containing 2 isoform a 
CHERP                 0.014   calcium homeostasis endoplasmic reticulum protein [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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