Guide to the Human Genome
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Name: SFRS5 Sequence: fasta or formatted (272aa) NCBI GI: 86991440
Description:

splicing factor, arginine/serine-rich 5

Referenced in:

Capping and Splicing

Other entries for this name:
alt mRNA [272aa] splicing factor, arginine/serine-rich 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         13           2
 C cysteine            0.7          2           1
 D aspartate           5.9         16           2
 E glutamate           6.2         17           1
 F phenylalanine       3.7         10           2
 G glycine             7.0         19           2
 H histidine           1.1          3           1
 I isoleucine          3.3          9           1
 K lysine              6.2         17           1
 L leucine             4.0         11           1
 M methionine          0.7          2           1
 N asparagine          3.3          9           1
 P proline             3.3          9           2
 Q glutamine           1.5          4           1
 R arginine           20.6         56           2
 S serine             18.4         50           3
 T threonine           1.5          4           1
 V valine              5.5         15           2
 W tryptophan          0.4          1           1
 Y tyrosine            1.8          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   splicing factor, arginine/serine-rich 5 
SFRS5                 1.000   splicing factor, arginine/serine-rich 5 
SFRS6                 0.557   arginine/serine-rich splicing factor 6 
SFRS4                 0.538   splicing factor, arginine/serine-rich 4 
SFRS1                 0.283   splicing factor, arginine/serine-rich 1 isoform 1 [Ho...
SFRS1                 0.213   splicing factor, arginine/serine-rich 1 isoform 2 [...
SFRS9                 0.192   splicing factor, arginine/serine-rich 9 
SFRS7                 0.172   splicing factor, arginine/serine-rich 7 
SFRS2                 0.136   splicing factor, arginine/serine-rich 2 
SFRS2B                0.132   splicing factor, arginine/serine-rich 2B 
FUSIP1                0.126   FUS interacting protein (serine-arginine rich) 1 iso...
SFRS3                 0.121   splicing factor, arginine/serine-rich 3 
SRrp35                0.119   serine-arginine repressor protein 
DDX46                 0.109   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
CHERP                 0.107   calcium homeostasis endoplasmic reticulum protein [...
ZRANB2                0.101   zinc finger protein 265 isoform 1 
ZRANB2                0.101   zinc finger protein 265 isoform 2 
RSRC2                 0.101   arginine/serine-rich coiled-coil 2 isoform b 
RSRC2                 0.101   arginine/serine-rich coiled-coil 2 isoform a 
PRPF38B               0.099   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
GPATCH8               0.097   G patch domain containing 8 
SFRS11                0.097   splicing factor, arginine/serine-rich 11 
RBM28                 0.091   RNA binding motif protein 28 
LOC100170229          0.089   hypothetical protein LOC100170229 
SFRS12                0.087   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.087   splicing factor, arginine/serine-rich 12 isoform b [...
SFRS16                0.087   splicing factor, arginine/serine-rich 16 
NKTR                  0.085   natural killer-tumor recognition sequence 
TRA2B                 0.083   splicing factor, arginine/serine-rich 10 
RBM39                 0.083   RNA binding motif protein 39 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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