Guide to the Human Genome
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Name: CUGBP2 Sequence: fasta or formatted (508aa) NCBI GI: 68303647
Description:

CUG triplet repeat, RNA binding protein 2 isoform 3

Referenced in:

RNA-binding Proteins

Other entries for this name:
alt prot [521aa] CUG triplet repeat, RNA binding protein 2 isoform 2
alt prot [488aa] CUG triplet repeat, RNA binding protein 2 isoform 4
alt prot [490aa] CUG triplet repeat, RNA binding protein 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         63           7
 C cysteine            1.6          8           2
 D aspartate           3.3         17           1
 E glutamate           3.3         17           2
 F phenylalanine       3.7         19           1
 G glycine             8.1         41           2
 H histidine           1.2          6           2
 I isoleucine          3.9         20           1
 K lysine              5.1         26           2
 L leucine             9.8         50           3
 M methionine          4.1         21           1
 N asparagine          6.3         32           2
 P proline             4.5         23           2
 Q glutamine           8.9         45           3
 R arginine            3.1         16           2
 S serine              8.1         41           3
 T threonine           6.5         33           2
 V valine              3.5         18           2
 W tryptophan          0.4          2           1
 Y tyrosine            2.0         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CUG triplet repeat, RNA binding protein 2 isoform 3 ... 
CUGBP2                0.958   CUG triplet repeat, RNA binding protein 2 isoform 2...
CUGBP2                0.946   CUG triplet repeat, RNA binding protein 2 isoform 4...
CUGBP2                0.945   CUG triplet repeat, RNA binding protein 2 isoform 1 ...
CUGBP1                0.769   CUG triplet repeat, RNA-binding protein 1 isoform 2 ...
CUGBP1                0.768   CUG triplet repeat, RNA-binding protein 1 isoform 1 [...
CUGBP1                0.762   CUG triplet repeat, RNA-binding protein 1 isoform 3 ...
TNRC4                 0.370   trinucleotide repeat containing 4 
BRUNOL6               0.361   bruno-like 6, RNA binding protein 
BRUNOL5               0.356   bruno-like 5, RNA binding protein isoform 1 
BRUNOL4               0.345   bruno-like 4, RNA binding protein isoform 2 
BRUNOL4               0.343   bruno-like 4, RNA binding protein isoform 1 
BRUNOL4               0.342   bruno-like 4, RNA binding protein isoform 3 
BRUNOL4               0.286   bruno-like 4, RNA binding protein isoform 4 
BRUNOL5               0.125   bruno-like 5, RNA binding protein isoform 2 
ELAVL2                0.058   ELAV (embryonic lethal, abnormal vision, Drosophila...
ELAVL4                0.058   ELAV-like 4 isoform 1 
ELAVL1                0.058   ELAV-like 1 
ELAVL4                0.058   ELAV-like 4 isoform 5 
ELAVL4                0.058   ELAV-like 4 isoform 4 
ELAVL4                0.058   ELAV-like 4 isoform 3 
ELAVL4                0.058   ELAV-like 4 isoform 2 
ELAVL3                0.055   ELAV-like protein 3 isoform 1 
ELAVL3                0.055   ELAV-like protein 3 isoform 2 
RBM28                 0.047   RNA binding motif protein 28 
RBM45                 0.045   RNA binding motif protein 45 
RBMS3                 0.045   RNA binding motif, single stranded interacting prote...
RBMS3                 0.045   RNA binding motif, single stranded interacting prote...
RBMS3                 0.044   RNA binding motif, single stranded interacting prote...
TIAL1                 0.043   TIA-1 related protein isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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