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Search of human proteins with 113206028
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113206028 mucin 1 isoform 7 precursor [Homo sapiens]
(159 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113206028 mucin 1 isoform 7 precursor [Homo sapiens] 324 2e-89
gi|113206026 mucin 1 isoform 6 precursor [Homo sapiens] 299 8e-82
gi|113206024 mucin 1 isoform 5 precursor [Homo sapiens] 207 3e-54
gi|67189007 mucin 1 isoform 2 precursor [Homo sapiens] 169 1e-42
gi|67189069 mucin 1 isoform 3 precursor [Homo sapiens] 160 3e-40
gi|65301117 mucin 1 isoform 1 precursor [Homo sapiens] 160 3e-40
gi|113206030 mucin 1 isoform 8 precursor [Homo sapiens] 98 3e-21
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 37 0.005
gi|125858485 hypothetical protein LOC80209 isoform 2 [Homo sapiens] 34 0.046
gi|125656155 hypothetical protein LOC80209 isoform 1 [Homo sapiens] 34 0.046
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 32 0.30
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 32 0.30
gi|71725360 zinc finger protein 609 [Homo sapiens] 30 0.67
gi|240255432 hypothetical protein LOC100130988 [Homo sapiens] 30 0.87
gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens] 30 0.87
gi|167736355 mucin 4 isoform a [Homo sapiens] 29 1.5
gi|46359075 zinc finger protein 423 [Homo sapiens] 29 1.5
gi|38788260 bromodomain PHD finger transcription factor isoform ... 29 1.5
gi|38788274 bromodomain PHD finger transcription factor isoform ... 29 1.5
gi|60097902 filaggrin [Homo sapiens] 29 1.9
gi|239742580 PREDICTED: similar to Putative POM121-like protein ... 29 1.9
gi|148727255 microtubule associated serine/threonine kinase fami... 29 1.9
gi|239048907 checkpoint with forkhead and ring finger domains is... 28 2.5
gi|4757836 BRCA1 associated protein-1 [Homo sapiens] 28 2.5
gi|117190342 PHD finger protein 2 [Homo sapiens] 28 2.5
gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax ... 28 2.5
gi|166295173 kin of IRRE like [Homo sapiens] 28 2.5
gi|151301154 mucin 6, gastric [Homo sapiens] 28 2.5
gi|42734375 ankyrin repeat and sterile alpha motif domain contai... 28 2.5
gi|61675704 hypothetical protein LOC347487 [Homo sapiens] 28 3.3
>gi|113206028 mucin 1 isoform 7 precursor [Homo sapiens]
Length = 159
Score = 324 bits (831), Expect = 2e-89
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK
Sbjct: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
Query: 61 NAFNSSLEDPSTDYYQELQRDISEMAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHG 120
NAFNSSLEDPSTDYYQELQRDISEMAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHG
Sbjct: 61 NAFNSSLEDPSTDYYQELQRDISEMAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHG 120
Query: 121 RYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSANL 159
RYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSANL
Sbjct: 121 RYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSANL 159
>gi|113206026 mucin 1 isoform 6 precursor [Homo sapiens]
Length = 150
Score = 299 bits (765), Expect = 8e-82
Identities = 150/159 (94%), Positives = 150/159 (94%), Gaps = 9/159 (5%)
Query: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
MTPGTQSPFFLLLLLTVLT VVTGSGHASSTPGGEKETSATQRSSVPSSTEK
Sbjct: 1 MTPGTQSPFFLLLLLTVLT---------VVTGSGHASSTPGGEKETSATQRSSVPSSTEK 51
Query: 61 NAFNSSLEDPSTDYYQELQRDISEMAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHG 120
NAFNSSLEDPSTDYYQELQRDISEMAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHG
Sbjct: 52 NAFNSSLEDPSTDYYQELQRDISEMAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHG 111
Query: 121 RYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSANL 159
RYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSANL
Sbjct: 112 RYVPPSSTDRSPYEKVSAGNGGSSLSYTNPAVAATSANL 150
>gi|113206024 mucin 1 isoform 5 precursor [Homo sapiens]
Length = 203
Score = 207 bits (527), Expect = 3e-54
Identities = 120/212 (56%), Positives = 131/212 (61%), Gaps = 62/212 (29%)
Query: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQ---------R 51
MTPGTQSPFFLLLLLTVLT VVTGSGHASSTPGGEKETSATQ +
Sbjct: 1 MTPGTQSPFFLLLLLTVLT---------VVTGSGHASSTPGGEKETSATQRSSVPSSTEK 51
Query: 52 SSVPSSTEKNAFN----------------------SSLEDPSTDYYQELQRDIS------ 83
+++P+ T + SS+ D + + +
Sbjct: 52 NAIPAPTTTKSCRETFLKCFCRFINKGVFWASPILSSVSDVPFPFSAQSGAGVPGWGIAL 111
Query: 84 ----------------EMAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSS 127
+AVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSS
Sbjct: 112 LVLVCVLVALAIVYLIALAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSS 171
Query: 128 TDRSPYEKVSAGNGGSSLSYTNPAVAATSANL 159
TDRSPYEKVSAGNGGSSLSYTNPAVAATSANL
Sbjct: 172 TDRSPYEKVSAGNGGSSLSYTNPAVAATSANL 203
>gi|67189007 mucin 1 isoform 2 precursor [Homo sapiens]
Length = 264
Score = 169 bits (427), Expect = 1e-42
Identities = 85/85 (100%), Positives = 85/85 (100%)
Query: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK
Sbjct: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
Query: 61 NAFNSSLEDPSTDYYQELQRDISEM 85
NAFNSSLEDPSTDYYQELQRDISEM
Sbjct: 61 NAFNSSLEDPSTDYYQELQRDISEM 85
Score = 160 bits (406), Expect = 3e-40
Identities = 74/75 (98%), Positives = 75/75 (100%)
Query: 85 MAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS 144
+AVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS
Sbjct: 190 LAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS 249
Query: 145 LSYTNPAVAATSANL 159
LSYTNPAVAATSANL
Sbjct: 250 LSYTNPAVAATSANL 264
>gi|67189069 mucin 1 isoform 3 precursor [Homo sapiens]
Length = 255
Score = 160 bits (406), Expect = 3e-40
Identities = 74/75 (98%), Positives = 75/75 (100%)
Query: 85 MAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS 144
+AVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS
Sbjct: 181 LAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS 240
Query: 145 LSYTNPAVAATSANL 159
LSYTNPAVAATSANL
Sbjct: 241 LSYTNPAVAATSANL 255
Score = 143 bits (361), Expect = 5e-35
Identities = 76/85 (89%), Positives = 76/85 (89%), Gaps = 9/85 (10%)
Query: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
MTPGTQSPFFLLLLLTVLT VVTGSGHASSTPGGEKETSATQRSSVPSSTEK
Sbjct: 1 MTPGTQSPFFLLLLLTVLT---------VVTGSGHASSTPGGEKETSATQRSSVPSSTEK 51
Query: 61 NAFNSSLEDPSTDYYQELQRDISEM 85
NAFNSSLEDPSTDYYQELQRDISEM
Sbjct: 52 NAFNSSLEDPSTDYYQELQRDISEM 76
>gi|65301117 mucin 1 isoform 1 precursor [Homo sapiens]
Length = 273
Score = 160 bits (406), Expect = 3e-40
Identities = 74/75 (98%), Positives = 75/75 (100%)
Query: 85 MAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS 144
+AVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS
Sbjct: 199 LAVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS 258
Query: 145 LSYTNPAVAATSANL 159
LSYTNPAVAATSANL
Sbjct: 259 LSYTNPAVAATSANL 273
Score = 132 bits (332), Expect = 1e-31
Identities = 76/103 (73%), Positives = 76/103 (73%), Gaps = 27/103 (26%)
Query: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
MTPGTQSPFFLLLLLTVLT VVTGSGHASSTPGGEKETSATQRSSVPSSTEK
Sbjct: 1 MTPGTQSPFFLLLLLTVLT---------VVTGSGHASSTPGGEKETSATQRSSVPSSTEK 51
Query: 61 NA------------------FNSSLEDPSTDYYQELQRDISEM 85
NA FNSSLEDPSTDYYQELQRDISEM
Sbjct: 52 NALSTGVSFFFLSFHISNLQFNSSLEDPSTDYYQELQRDISEM 94
>gi|113206030 mucin 1 isoform 8 precursor [Homo sapiens]
Length = 158
Score = 97.8 bits (242), Expect = 3e-21
Identities = 53/62 (85%), Positives = 53/62 (85%), Gaps = 9/62 (14%)
Query: 1 MTPGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
MTPGTQSPFFLLLLLTVLT VVTGSGHASSTPGGEKETSATQRSSVPSSTEK
Sbjct: 1 MTPGTQSPFFLLLLLTVLT---------VVTGSGHASSTPGGEKETSATQRSSVPSSTEK 51
Query: 61 NA 62
NA
Sbjct: 52 NA 53
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 37.4 bits (85), Expect = 0.005
Identities = 43/151 (28%), Positives = 65/151 (43%), Gaps = 21/151 (13%)
Query: 16 TVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYY 75
TVLT TT TV TGS +TP +TS T S ++T A S+ ST
Sbjct: 2106 TVLTTTTT----TVATGS---MATPSSSTQTSGTPPSLTTTATTITATGSTTNPSSTPGT 2158
Query: 76 QELQRDISEMAVCQCRRKNYGQLDIFPAR---DTYHPMSEYPTYHTHGRYVPPSS--TDR 130
+ ++ A N + P+ T+ P THGR +PPSS T R
Sbjct: 2159 TPIPPVLTTTATTPAATSN----TVTPSSALGTTHTPPVPNTMATTHGRSLPPSSPHTVR 2214
Query: 131 SPYEKVSAGNGGSS-----LSYTNPAVAATS 156
+ + ++G G++ + T+ +AAT+
Sbjct: 2215 TAWTSATSGILGTTHITEPSTVTSHTLAATT 2245
Score = 37.4 bits (85), Expect = 0.005
Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 16/134 (11%)
Query: 16 TVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYY 75
TVLT TT TV TGS +TP +TS T S ++T A S+ ST
Sbjct: 3363 TVLTTTTT----TVATGS---MATPSSSTQTSGTPPSLTTTATTITATGSTTNPSSTPGT 3415
Query: 76 QELQRDISEMAVCQCRRKNYGQLDIFPAR---DTYHPMSEYPTYHTHGRYVPPSS--TDR 130
+ ++ A + + P+ T+ P T THGR +PPSS T R
Sbjct: 3416 TPIPPVLTTTATTPAATSS----TVTPSSALGTTHTPPVPNTTATTHGRSLPPSSPHTVR 3471
Query: 131 SPYEKVSAGNGGSS 144
+ + ++G G++
Sbjct: 3472 TAWTSATSGILGTT 3485
Score = 36.6 bits (83), Expect = 0.009
Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 16/134 (11%)
Query: 16 TVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYY 75
TVLT TT TV TGS +TP +TS T S + ++T A S+ ST
Sbjct: 3920 TVLTTTTT----TVATGS---MATPSSSTQTSGTPPSLITTATTITATGSTTNPSSTPGT 3972
Query: 76 QELQRDISEMAVCQCRRKNYGQLDIFPAR---DTYHPMSEYPTYHTHGRYVPPSS--TDR 130
+ ++ A + + P+ T+ P T THGR + PSS T R
Sbjct: 3973 TPIPPVLTTTATTPAATSS----TVTPSSALGTTHTPPVPNTTATTHGRSLSPSSPHTVR 4028
Query: 131 SPYEKVSAGNGGSS 144
+ + ++G G++
Sbjct: 4029 TAWTSATSGTLGTT 4042
Score = 35.4 bits (80), Expect = 0.021
Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 16/134 (11%)
Query: 16 TVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYY 75
TVLT TT TV TGS +TP +TS T S ++T A S+ ST
Sbjct: 2663 TVLTTTTT----TVATGS---MATPSSSTQTSGTPPSLTTTATTITATGSTTNPSSTPGT 2715
Query: 76 QELQRDISEMAVCQCRRKNYGQLDIFPAR---DTYHPMSEYPTYHTHGRYVPPSS--TDR 130
+ ++ A + + P+ T+ P T THGR + PSS T R
Sbjct: 2716 TPIPPVLTTTATTPAATSS----TVTPSSALGTTHTPPVPNTTATTHGRSLSPSSPHTVR 2771
Query: 131 SPYEKVSAGNGGSS 144
+ + ++G G++
Sbjct: 2772 TAWTSATSGTLGTT 2785
Score = 27.3 bits (59), Expect = 5.6
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 17 VLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPST 72
VLT TT TV TGS +TP +TS T S ++T A S+ ST
Sbjct: 4654 VLTTTTT----TVATGS---MATPSSSTQTSGTPPSLTTTATTITATGSTTNPSST 4702
>gi|125858485 hypothetical protein LOC80209 isoform 2 [Homo sapiens]
Length = 922
Score = 34.3 bits (77), Expect = 0.046
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 11/122 (9%)
Query: 3 PGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNA 62
PG Q+P + + + A TAP PA V+ G A S+ + SS + +
Sbjct: 785 PGLQAPSTVAAVTPLPVAATAPSPAPVLPGFASAFSSNFNSALVAQAGLSSGLQAAGSSV 844
Query: 63 FNSSL---------EDPSTDYYQELQRDISEMAVCQCRRKNYGQLDIFPARDTYHPMSEY 113
F L ++PS QELQ + + + + + L+ +PA+ P Y
Sbjct: 845 FPGLLSLPGIPGFPQNPSQSSLQELQHNAAAQSALLQQVHSASALESYPAQPDGFP--SY 902
Query: 114 PT 115
P+
Sbjct: 903 PS 904
>gi|125656155 hypothetical protein LOC80209 isoform 1 [Homo sapiens]
Length = 944
Score = 34.3 bits (77), Expect = 0.046
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 11/122 (9%)
Query: 3 PGTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNA 62
PG Q+P + + + A TAP PA V+ G A S+ + SS + +
Sbjct: 807 PGLQAPSTVAAVTPLPVAATAPSPAPVLPGFASAFSSNFNSALVAQAGLSSGLQAAGSSV 866
Query: 63 FNSSL---------EDPSTDYYQELQRDISEMAVCQCRRKNYGQLDIFPARDTYHPMSEY 113
F L ++PS QELQ + + + + + L+ +PA+ P Y
Sbjct: 867 FPGLLSLPGIPGFPQNPSQSSLQELQHNAAAQSALLQQVHSASALESYPAQPDGFP--SY 924
Query: 114 PT 115
P+
Sbjct: 925 PS 926
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 31.6 bits (70), Expect = 0.30
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 7 SPFFLLLLLT-------VLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSST 58
SPFF LLT T AP PAT S +SS+ +S+ SS SS+
Sbjct: 52 SPFFREALLTSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSS 110
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 31.6 bits (70), Expect = 0.30
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 7 SPFFLLLLLT-------VLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSST 58
SPFF LLT T AP PAT S +SS+ +S+ SS SS+
Sbjct: 52 SPFFREALLTSAPLPLPPATGGAAPNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSS 110
>gi|71725360 zinc finger protein 609 [Homo sapiens]
Length = 1411
Score = 30.4 bits (67), Expect = 0.67
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 9/115 (7%)
Query: 23 APKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYYQELQRDI 82
+P A G+ + SS G E + T+R P S E N E+ EL
Sbjct: 900 SPSYAQSSPGALNPSSQAGVESQALKTKRDEEPESIEGKVKNDICEEKK----PELSSSS 955
Query: 83 SEMAVCQCRRKNYGQLDIFPARDTYHPMSEY--PTYHTHGRYVPPSSTDRSPYEK 135
+ +V Q R Y Q ++ + Y P Y +YHTH + ++ R YE+
Sbjct: 956 QQPSVIQQRPNMYMQ-SLYYNQYAYVPPYGYSDQSYHTH--LLSTNTAYRQQYEE 1007
>gi|240255432 hypothetical protein LOC100130988 [Homo sapiens]
Length = 438
Score = 30.0 bits (66), Expect = 0.87
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 56 SSTEKNAFNSSLEDPSTDYYQELQRDISEMAVCQCR-RKNYGQLD--IFPARDTYHPM-- 110
S ++++ + ++E+ +Y +L R ++ V R NYG+ + PA +HP
Sbjct: 13 SISKRSILSGTVENIDYPHYCDLLRKMNMPFVKGLENRHNYGRFEKKCNPAFLKFHPYPP 72
Query: 111 SEYPTYHTHGRYVPP 125
S P YH H Y PP
Sbjct: 73 SVLPDYHLHDPYPPP 87
>gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens]
Length = 2639
Score = 30.0 bits (66), Expect = 0.87
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 4 GTQSPFFLLLLLTVLTATTAPKPATVVTGSGHASST----------PGGEKETSATQRSS 53
GTQ+P ++ + T T T P P T TG +ST P E T T RS+
Sbjct: 1629 GTQTPT-MIPISTTTTVTPTPTPTTGSTGPPTHTSTAPIAELTTSNPPPESSTPQTSRST 1687
Query: 54 VPSSTEKNAFNSSL 67
TE S+L
Sbjct: 1688 SSPLTESTTLLSTL 1701
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 29.3 bits (64), Expect = 1.5
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 4 GTQSPFFLLLLLTVLTATTAPKPATVVT--GSGHASSTPGGEKETSAT-QRSSVPSSTEK 60
G +P + L +V T T P P T + +GHA+S P + +++T +S+P +
Sbjct: 3084 GQATPLPVTSLSSVSTGDTTPLPVTSPSSASTGHATSLPVTDTSSASTGDTTSLPVTDTS 3143
Query: 61 NAFNSSLED-PSTDYYQELQRDISEMAVCQ 89
+A+ P TD D + + V +
Sbjct: 3144 SAYTGDTTSLPVTDTSSSSTGDTTPLLVTE 3173
Score = 26.6 bits (57), Expect = 9.6
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 4 GTQSPFFLLLLLTVLTATTAPKPATVVT--GSGHASSTPGGEKETSATQRSS-VP-SSTE 59
G +P + L +V T T P P T+ + SGH +S P + + +T + +P +ST
Sbjct: 3996 GQATPLPVTSLSSVSTGDTTPLPVTIPSSASSGHTTSLPVTDASSVSTGHGTPLPVTSTS 4055
Query: 60 KNAFNSSLEDPSTD 73
+ + P TD
Sbjct: 4056 SASTGDTTPLPVTD 4069
>gi|46359075 zinc finger protein 423 [Homo sapiens]
Length = 1284
Score = 29.3 bits (64), Expect = 1.5
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 30 VTGSGHASSTPGGEKETSAT--QRSSVPSSTEKNAFNSSLEDPSTDYYQELQRDISEMA 86
VT +G P +++TS R+SV S E+N + +ED S Q+D +A
Sbjct: 22 VTAAGGLEGEPECDQKTSRALEDRNSVTSQEERNEDDEDMEDESIYTCDHCQQDFESLA 80
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 29.3 bits (64), Expect = 1.5
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 17 VLTATTAPKP-ATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
V+T +P +T V+ SSTPG + TSAT S++ SS +
Sbjct: 2218 VMTQIIRGQPVSTAVSAPNTVSSTPGQKSLTSATSTSNIQSSASQ 2262
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 29.3 bits (64), Expect = 1.5
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 17 VLTATTAPKP-ATVVTGSGHASSTPGGEKETSATQRSSVPSSTEK 60
V+T +P +T V+ SSTPG + TSAT S++ SS +
Sbjct: 2092 VMTQIIRGQPVSTAVSAPNTVSSTPGQKSLTSATSTSNIQSSASQ 2136
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 28.9 bits (63), Expect = 1.9
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 6/116 (5%)
Query: 31 TGSGH--ASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYYQELQRDISEMAVC 88
+GS H ASS + + A Q S S T + +S +D ++ + E SE
Sbjct: 909 SGSRHHEASSHADISRHSQAGQGQSEGSRTSRRQGSSVSQDSDSEGHSE----DSERWSG 964
Query: 89 QCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSS 144
R + G + HP S + HG S +P+ + S+G +S
Sbjct: 965 SASRNHRGSAQEQSRHGSRHPRSHHEDRAGHGHSADSSRQSGTPHAETSSGGQAAS 1020
>gi|239742580 PREDICTED: similar to Putative POM121-like protein
1-like [Homo sapiens]
Length = 897
Score = 28.9 bits (63), Expect = 1.9
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 19/80 (23%)
Query: 20 ATTAPKPATVVTGSGH-------------ASSTPGGEKETSA------TQRSSVPSSTEK 60
AT AP P+T+ SG AS+T + S +Q S S ++
Sbjct: 331 ATAAPPPSTLNNTSGSLLNAVDGGPSHFLASATAAARAQRSEVRYNQRSQTSRTRSCLKR 390
Query: 61 NAFNSSLEDPSTDYYQELQR 80
NA +SS ST+ QEL+R
Sbjct: 391 NASSSSSSHSSTEGLQELKR 410
>gi|148727255 microtubule associated serine/threonine kinase family
member 4 isoform a [Homo sapiens]
Length = 2434
Score = 28.9 bits (63), Expect = 1.9
Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 14/114 (12%)
Query: 38 STPGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYYQELQRDISEMAVCQCRRKNYGQ 97
STP T+++Q SS SS + S PST L + RRK+ G
Sbjct: 1127 STPDFPSGTNSSQSSSPSSSAPNSPAGSGHIRPST--LHGLAPKLGGQRYRSGRRKSAGN 1184
Query: 98 LDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYEKVSAGNGGSSLSYTNPA 151
+ + P T P + P+S RSP + G S ++ P+
Sbjct: 1185 IPLSPLARTPSPTPQ------------PTSPQRSPSPLLGHSLGNSKIAQAFPS 1226
>gi|239048907 checkpoint with forkhead and ring finger domains
isoform 4 [Homo sapiens]
Length = 623
Score = 28.5 bits (62), Expect = 2.5
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 12 LLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPS 71
L LL T + V+TGSG +P G + A S E ++F S+L D
Sbjct: 146 LKLLGSSDPPTLASQSIVITGSGGGGISPKGSGPSVA--------SDEVSSFASALPDRK 197
Query: 72 TDYYQELQ-RDISEMAVCQCRRKNYGQLDI 100
T + L+ +D ++ + + + G LD+
Sbjct: 198 TASFSSLEPQDQEDLEPVKKKMRGDGDLDL 227
>gi|4757836 BRCA1 associated protein-1 [Homo sapiens]
Length = 729
Score = 28.5 bits (62), Expect = 2.5
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 11 LLLLLTVLTATTAPKPATVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDP 70
L + L++ T++ A PA V S TP E +A++ S AFNS L P
Sbjct: 459 LSIPLSIKTSSGAGSPAVAVPTHSQPSPTPSNESTDTASEIGS--------AFNSPLRSP 510
>gi|117190342 PHD finger protein 2 [Homo sapiens]
Length = 1096
Score = 28.5 bits (62), Expect = 2.5
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 21 TTAPKPATVVT-GSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYYQEL 78
TT+P +T ++ G+ S+TP S T S+ +S++ + SS E P + L
Sbjct: 963 TTSPSTSTSISAGTTSTSTTPASTTPASTTPASTSTASSQASQEGSSPEPPPESHSSSL 1021
>gi|5174573 myeloid/lymphoid or mixed-lineage leukemia trithorax
homolog 2 [Homo sapiens]
Length = 1210
Score = 28.5 bits (62), Expect = 2.5
Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 9/135 (6%)
Query: 24 PKP-ATVVTGSGHASSTPGGEKETSATQRSSVPSSTEKNAFNSSLEDPSTDYYQELQRDI 82
P+P A+ + S + ST + + + SS S E + +P + Q D
Sbjct: 458 PEPVASAHSSSAESESTSDSDSSSDSESESSSSDSEENEPLETPAPEPEPPTTNKWQLDN 517
Query: 83 SEMAVCQCRRKNYGQLDIFPARDTYHPMSEYPT------YHTHGRYVPPSSTDRSPYEKV 136
V Q G P R HP S+ + H+ + PP S+ ++P
Sbjct: 518 WLTKVSQPAAPPEGPRSTEPPRR--HPESKGSSDSATSQEHSESKDPPPKSSSKAPRAPP 575
Query: 137 SAGNGGSSLSYTNPA 151
A + G +PA
Sbjct: 576 EAPHPGKRSCQKSPA 590
>gi|166295173 kin of IRRE like [Homo sapiens]
Length = 757
Score = 28.5 bits (62), Expect = 2.5
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 89 QCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRSPYE 134
Q +NY + + P + + YPTY PPS +R+PYE
Sbjct: 681 QLSYENYEKFNSHP----FPGAAGYPTYRLGYPQAPPSGLERTPYE 722
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 28.5 bits (62), Expect = 2.5
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 7 SPFFLLLLLTVLTATTAPKPATVVTGSGHA-SSTPGGEKETSATQRSSVPSSTEKN 61
SPF L LL + T T +P P++ + S A STP T S S+T ++
Sbjct: 2218 SPFTLSALLPISTVTVSPTPSSHLASSTIAFPSTPRTTASTHTAPAFSSQSTTSRS 2273
>gi|42734375 ankyrin repeat and sterile alpha motif domain
containing 3 [Homo sapiens]
Length = 656
Score = 28.5 bits (62), Expect = 2.5
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 86 AVCQCRRKNYGQLDIFPARDTYHPMSEYPTYHTHGRYVPPSSTDRS 131
A + K YG + I DTY P Y + +Y SS+D S
Sbjct: 203 ATARMLAKQYGHMKIVALMDTYSPSLPKSLYRSPEKYEDLSSSDES 248
>gi|61675704 hypothetical protein LOC347487 [Homo sapiens]
Length = 361
Score = 28.1 bits (61), Expect = 3.3
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 38 STPGGEKETSATQRSSVPSSTEKNAFNSSLEDPS 71
ST ++S+ +R+S SSTEK SSL+ PS
Sbjct: 114 STADKSSDSSSPERASAQSSTEKLIRPSSLQKPS 147
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.124 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,895,667
Number of Sequences: 37866
Number of extensions: 314430
Number of successful extensions: 1566
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 1313
Number of HSP's gapped (non-prelim): 333
length of query: 159
length of database: 18,247,518
effective HSP length: 94
effective length of query: 65
effective length of database: 14,688,114
effective search space: 954727410
effective search space used: 954727410
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.