Guide to the Human Genome
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Name: CHFR Sequence: fasta or formatted (623aa) NCBI GI: 239048907
Description:

checkpoint with forkhead and ring finger domains isoform 4

Referenced in:

Ring Finger Proteins

Other entries for this name:
alt prot [664aa] checkpoint with forkhead and ring finger domains isoform 1
alt prot [663aa] checkpoint with forkhead and ring finger domains isoform 2
alt prot [652aa] checkpoint with forkhead and ring finger domains isoform 3
alt prot [572aa] checkpoint with forkhead and ring finger domains isoform 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         36           3
 C cysteine            5.8         36           2
 D aspartate           5.8         36           1
 E glutamate           6.9         43           2
 F phenylalanine       2.1         13           1
 G glycine             6.4         40           4
 H histidine           2.2         14           2
 I isoleucine          2.7         17           2
 K lysine              4.5         28           3
 L leucine             9.5         59           2
 M methionine          1.9         12           1
 N asparagine          3.2         20           3
 P proline             6.9         43           3
 Q glutamine           5.9         37           2
 R arginine            6.4         40           3
 S serine              8.3         52           2
 T threonine           5.1         32           2
 V valine              6.6         41           2
 W tryptophan          1.0          6           1
 Y tyrosine            2.9         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   checkpoint with forkhead and ring finger domains is... 
CHFR                  0.940   checkpoint with forkhead and ring finger domains is...
CHFR                  0.936   checkpoint with forkhead and ring finger domains is...
CHFR                  0.931   checkpoint with forkhead and ring finger domains is...
CHFR                  0.902   checkpoint with forkhead and ring finger domains is...
RNF8                  0.023   ring finger protein 8 isoform 1 
TRIM65                0.021   tripartite motif-containing 65 
TRIM35                0.020   tripartite motif-containing 35 isoform 2 
PCGF3                 0.020   ring finger protein 3 
TRIM3                 0.019   tripartite motif-containing 3 
TRIM3                 0.019   tripartite motif-containing 3 
PCGF1                 0.018   polycomb group ring finger 1 
DZIP3                 0.018   DAZ interacting protein 3, zinc finger 
PCGF6                 0.017   polycomb group ring finger 6 isoform a 
RNF165                0.017   ring finger protein 165 
RNF166                0.017   ring finger protein 166 
SYVN1                 0.016   synoviolin 1 isoform b 
SYVN1                 0.016   synoviolin 1 isoform a 
LNX1                  0.016   ligand of numb-protein X 1 isoform a 
DTX3L                 0.016   deltex 3-like 
LONRF3                0.016   LON peptidase N-terminal domain and ring finger 3 is...
LONRF3                0.016   LON peptidase N-terminal domain and ring finger 3 is...
TRIM13                0.016   ret finger protein 2 isoform 2 
TRIM13                0.016   ret finger protein 2 isoform 1 
TRIM13                0.016   ret finger protein 2 isoform 1 
TRIM13                0.016   ret finger protein 2 isoform 1 
RNF135                0.016   ring finger protein 135 isoform 2 
RNF135                0.016   ring finger protein 135 isoform 1 
RNF11                 0.016   ring finger protein 11 
RNF168                0.016   ring finger protein 168 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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